mRNA_H-elongata_contig103417.284.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.840e-56 Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 1 Query: 4 RVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
R+GKRGAPQAFARKL EIL TES I+WN +G+AF V DV+ FS + LTKYYRHSKFSSFQRQLNLYSFRKIVKG DAGGYAHPMF RDRPDDLYHVRRSISGS RYEPAAA
Sbjct: 33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAA 145
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: D8LDA5_ECTSI (Putative Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA5_ECTSI) HSP 1 Score: 179 bits (454), Expect = 6.410e-51 Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 1 Query: 28 QAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
+AFARKL EILTTES I+WN +G+AF V DV+ FS + LTKYYRHSKFSSFQRQLNLYSFRKIVKG DAGGYAHPMF RDRPDDLYHVRRSISGS RYEPAAA
Sbjct: 12 EAFARKLAEILTTESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAA 116
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK) HSP 1 Score: 143 bits (361), Expect = 6.510e-39 Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
PR G+RGAPQAFARKLYEIL E +++WN G AF VRD+D FS E L KY+RHSKF+SFQRQLNLY FRKI +G DAG YAH F + +PD L VRRS S S P A
Sbjct: 4 PRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSPSPPHPA 117
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.030e-36 Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRY 327
PR G+RGAPQ F RKLYEIL+TE + +I W + G +F ++++++F L KY+RH K+SSFQRQLNLY FRK+ KG D G YAH F RD+P+ L VRR +G +
Sbjct: 4 PRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGAF 112
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA) HSP 1 Score: 137 bits (346), Expect = 3.780e-36 Identity = 65/110 (59.09%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYE 330
PR G+RGAPQ F RKLYEILT ES +I+W E+GT+F ++++D F E L KY+RH K+SSFQRQLNLY FRKI KGPD G YAH F RD L VRR +GR +
Sbjct: 74 PRTGRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRDDESQLVKVRRWAQSAGRQQ 183
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK) HSP 1 Score: 135 bits (339), Expect = 8.390e-36 Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRY 327
PR G RGAPQ FARKLY+IL TES+ VI WNE GTAF ++D+D FS E L KY+RH+ +SSFQRQ+NLY F+KI +GP AG H F R RPD L V+R S +
Sbjct: 11 PRTGSRGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKISRGPFAGANMHQQFLRGRPDLLVMVKRKPRSSSPF 119
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA) HSP 1 Score: 127 bits (320), Expect = 8.290e-35 Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRR 303
PR G+RGAPQ F RKLYEILT E VI W G +F + +++ F E L Y+RH K+SSFQRQLNLY FRKI KGPD G YAH F RD+P+ L VRR
Sbjct: 96 PRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA) HSP 1 Score: 132 bits (331), Expect = 3.560e-34 Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGR 324
PR GKRGAPQ F RKLYEIL ES+ I+W E G +F ++D+++F L KY+RH KFSSFQRQLNLY FRKI KG + G Y H F RD+ D L VRR+ +GR
Sbjct: 66 PRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRTPQVTGR 173
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.760e-34 Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRS 306
PR GKRGAPQAFA KLYEIL ES VIAW+ G AF ++D+D F + L KY+RH K+SSFQRQLNLY FRK KG D GGY H F R R D L VRR+
Sbjct: 74 PRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT 175
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.530e-33 Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1 Query: 1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
PR GKRGAPQ FARKLYEIL E I+W GT+F ++++D+F L KY+RH K+SSFQRQLNLY FRKI KG DAG YAH F R +P+ L+ VRR S P A
Sbjct: 158 PRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSSPVPPVA 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103417.284.1 >prot_H-elongata_contig103417.284.1 ID=prot_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLback to top mRNA from alignment at H-elongata_contig103417:687..1028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103417.284.1 ID=mRNA_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig103417:687..1028+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103417:687..1028+ >mRNA_H-elongata_contig103417.284.1 ID=mRNA_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig103417:687..1028+ (Himanthalia elongata Himel1 dioecious)back to top |