mRNA_H-elongata_contig102942.251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102942.251.1
Unique NamemRNA_H-elongata_contig102942.251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A836CLA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.070e-17
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:   40 KLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHR--------AAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAEWHYLAVDQG 282
            + AA++GH +A+WL+GR YYEG+G    ++ EA  WF R        AA +GSA+GQ YL G+++EYG GVPK+ +RA  WH  A  QG
Sbjct:  133 RSAAAKGHAEALWLVGRCYYEGRGA-AQNYTEAAAWFDRLWEECTAGAAGRGSAKGQFYL-GVLNEYGYGVPKDTKRAIAWHLRAARQG 219
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: D8LE06_ECTSI (Sel1 domain protein repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE06_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.140e-12
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   91 MYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQR 243
            M+ EGKGV  VDF EAN+WFHRAAAKG+A GQH+L GI  EYG GV K+ R
Sbjct:    1 MHCEGKGVAKVDFDEANKWFHRAAAKGNARGQHHL-GIAHEYGSGVTKDLR 50
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A839IR32_9GAMM (Sel1 repeat family protein n=1 Tax=Oceanospirillum sp. D5 TaxID=2760088 RepID=A0A839IR32_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 2.490e-8
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:   16 HRAATAWFKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLG-VPKNQRRAAEWHYLAVDQG 282
            HR   AWFK AASEGH+ A  + G + Y  +G   VD G+   +   AA +G A+ Q+ +A I  E G G + KN   A  W   A +QG
Sbjct:   32 HRWIMAWFKQAASEGHLKAQSMYGHLLYF-RGASPVDKGQGANYLLDAAKRGDAKAQYQIACIY-ETGFGHLQKNYENAVRWFVKAAEQG 119
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A1U9NQJ7_9BACT (Putative beta-lactamase HcpC n=1 Tax=Anaerohalosphaera lusitana TaxID=1936003 RepID=A0A1U9NQJ7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.210e-7
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   37 FKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAEWHYLAVDQGLAD 291
            +  +A  G++DAM+ +G  + EGKG    D+  A  WF +AA  G A     LA +  E G+G+ KN+ +AAEW+  A  Q + D
Sbjct:   45 YSRSARMGNVDAMYQMGLFHLEGKGGVDRDYAVAMGWFEKAARTGHALAMGKLADMYAE-GMGIFKNELKAAEWYQKASQQAIRD 128
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A1H3MYG3_9BURK (Uncharacterized protein n=1 Tax=Collimonas sp. OK242 TaxID=1798195 RepID=A0A1H3MYG3_9BURK)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-6
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   25 ATAWFKLAASEGHIDAMWLLGRMYYEGKGVGV-VDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAA 252
            A AW + AA+   ++A + LG+ +Y+G G+G  +D+G+A  W+ RAA  G+A+    LA +  +YG GVP++ +R+A
Sbjct:   82 AGAWLQNAAAANDVEAQFQLGQAFYQG-GLGFQLDYGQAWNWYERAAVAGNAKAGFMLARMA-KYGEGVPRDLKRSA 156
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A831PJR1_9DELT (Sel1 repeat family protein n=1 Tax=Geoalkalibacter subterraneus TaxID=483547 RepID=A0A831PJR1_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 2.750e-6
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   34 WFKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAEWHYLAVDQGLADSNNHLGLMKAHGKG 333
            W ++AA  G+ DA++ LGR+Y +G+GV  VD  ++ E+F  AA K      H +  +  E     P     A +W   A D G AD+ N L ++    +G
Sbjct:    3 WLQMAADAGYGDALYALGRIYEQGRGV-EVDREQSFEFFSAAARKNHPGAMHQMGRLALEQDA--PDAAVHALDWFRRAADSGEADALNDLAVLFLRQQG 99
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A1I3CEV3_9BURK (Uncharacterized protein n=3 Tax=Collimonas TaxID=202907 RepID=A0A1I3CEV3_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 5.890e-6
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   25 ATAWFKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAE 255
            A AW + AA+    +A + LG+ +Y+G+    VD+G+A  W+ RAA  G+A+    LA +  +YG GVP++ + +A+
Sbjct:   82 AGAWMQNAAAANEPEAQFQLGQAFYQGRLGFQVDYGQAWNWYERAATSGNAKASFMLARMA-KYGEGVPQDLKLSAK 157
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BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Match: A0A1Y1W8F9_9FUNG (HCP-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W8F9_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 7.150e-5
Identity = 35/119 (29.41%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:   25 ATAWFKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWFHRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAEWHYLAVDQGLADSNNHLGLMKAHGKGFSQDLTGAARHFQKVI 381
            A  WF+ AA  G  + +++ G +       G   FGEA ++F RAAA G+ E Q Y  G+    G G  KN   A E+  +A  +    +  +L  +   GK  ++D   A R  +  +
Sbjct:  228 ARGWFEEAARLGSPEGLFMAGTVL-----AGEEKFGEALDYFERAAALGNVEAQ-YNVGLYYLQGTGCEKNPELAVEYWTMAAAERFPVAMLNLAKLLMEGKEVARDRRRARRLLEAAV 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102942.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CLA6_9STRA7.070e-1748.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LE06_ECTSI1.140e-1268.63Sel1 domain protein repeat-containing protein n=1 ... [more]
A0A839IR32_9GAMM2.490e-840.00Sel1 repeat family protein n=1 Tax=Oceanospirillum... [more]
A0A1U9NQJ7_9BACT2.210e-737.65Putative beta-lactamase HcpC n=1 Tax=Anaerohalosph... [more]
A0A1H3MYG3_9BURK1.640e-638.96Uncharacterized protein n=1 Tax=Collimonas sp. OK2... [more]
A0A831PJR1_9DELT2.750e-633.00Sel1 repeat family protein n=1 Tax=Geoalkalibacter... [more]
A0A1I3CEV3_9BURK5.890e-636.36Uncharacterized protein n=3 Tax=Collimonas TaxID=2... [more]
A0A1Y1W8F9_9FUNG7.150e-529.41HCP-like protein n=1 Tax=Linderina pennispora TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102942contigH-elongata_contig102942:300..2286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog2880.D8LE06
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size396
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102942.251.1prot_H-elongata_contig102942.251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102942 300..2286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.8946211-CDS-H-elongata_contig102942:299..4991622929565.8946211-CDS-H-elongata_contig102942:299..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 300..499 -
1691679072.9355998-CDS-H-elongata_contig102942:299..4991691679072.9355998-CDS-H-elongata_contig102942:299..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 300..499 -
1622929565.9085257-CDS-H-elongata_contig102942:1275..13271622929565.9085257-CDS-H-elongata_contig102942:1275..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 1276..1327 -
1691679072.948044-CDS-H-elongata_contig102942:1275..13271691679072.948044-CDS-H-elongata_contig102942:1275..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 1276..1327 -
1622929565.920956-CDS-H-elongata_contig102942:2015..20701622929565.920956-CDS-H-elongata_contig102942:2015..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 2016..2070 -
1691679072.961546-CDS-H-elongata_contig102942:2015..20701691679072.961546-CDS-H-elongata_contig102942:2015..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 2016..2070 -
1622929565.9334235-CDS-H-elongata_contig102942:2197..22861622929565.9334235-CDS-H-elongata_contig102942:2197..2286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 2198..2286 -
1691679072.9714649-CDS-H-elongata_contig102942:2197..22861691679072.9714649-CDS-H-elongata_contig102942:2197..2286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102942 2198..2286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102942.251.1

>prot_H-elongata_contig102942.251.1 ID=prot_H-elongata_contig102942.251.1|Name=mRNA_H-elongata_contig102942.251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
GGSRDHRAATAWFKLAASEGHIDAMWLLGRMYYEGKGVGVVDFGEANEWF
HRAAAKGSAEGQHYLAGIVDEYGLGVPKNQRRAAEWHYLAVDQGLADSNN
HLGLMKAHGKGFSQDLTGAARHFQKVIIHPM*
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mRNA from alignment at H-elongata_contig102942:300..2286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102942.251.1 ID=mRNA_H-elongata_contig102942.251.1|Name=mRNA_H-elongata_contig102942.251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1987bp|location=Sequence derived from alignment at H-elongata_contig102942:300..2286- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGTCGGGACCACCGCGCAGCGACGGCCTGGTTCAAACTAGCTGC
TAGCGAAGGCCACATAGATGCTATGTGGCTCCTGGGAAGGTATGACTTAT
GCGGAAAAATGTGGAATGAAATAGGGCATGCTGACGTCTGTTTCACGGGA
GAGCGCCCGAATGTCCATGTGTCAAACTCGTTCTATATTTTCGCGCTGAT
ATTGATTCTATCGCAGAATGTACTACGAAGGAAAGGGCGTTGGCGTGGTT
GATTTTGGGGAAGCCAACGAGGTGCGAGCTTCTTTTTTTTAACGCAGAAT
CCGTGGAAATCCGACGGCGTTGGGGCCTTGGTTTATCACCGTAGAGATGC
ATGGCACGTACCTTCCAGTTGCACCGCGAAGACCCCAGCCCTACCCTCGC
GTTTGGAATCGTTTCCCTTCTGCCATGCAGCGCATCGCGACTTTGTTCCT
GATGAAGTTCATGTGCATCCACGCCTTTACTCAAATCGCGTCCCGTATTT
TCAGCACAAACAGCGAACGAGAAGGTGACATGGTGCCGCACAATATACCC
CCTCATGCAAGGGACCGGTGTACCCTGTCGATTTCCCCCGCAATTGTATT
AGGGTAAAAATGTGTCCAGGCACGTTGATGGGAATATCTCAACGGGATCC
TTCAAAAACCTGGTAGCTCTTCTAAGTACGGTACTCGTTTATAGGTAGAC
GCCGAGAAGAGGGGGTGGGAGGATCCGTGGTGTATTATACACTAAACATA
GTATACAATACACCATATCACAGTACATGCCATCACCTGCGATACCCGTC
TCGGCTCCTGTGCTAGGGCCACCAGCTGCTAACGCCAGTCGCATCCCTCG
TGCTATTGCCGGTGTTTTTTGTTGCGGTGCTTCCCCCCCCCACTTCCGCA
TTGTTTCCGTTTCCATGCGGTTCGTTTGCGAACTATTCCCAACGCTCCCG
AGAGGGCAGTGGTTCCACCGTGCGGCTGCCAAGGGCAGCGCAGAAGGCCA
GCACTACCTGGGTGAGAAAGCGGAACAGCGCACTCTACTGGTAGGAGGGC
GGTGTTTTCCTATACGGCCCCTTTAATGACAAACATGCCTGCTCCTTGTC
CGCAAGTCGCATGTCAGAGTCTATCGAAGTGTAACATTCAAGGTTCGATG
TATGACTTTTGTTTGAATCTGAATAAATACCCAGTCTGGACAGGAGGACT
ATATACAAAAGTGACCACTACCTACAGTAATTCAAACATCTACGTCGGAA
TCAAGTACCAGTAATCGCCTTCGATACTGTCCGTGACTATATCGCACATG
TCCACTGTACCAATGGTGGGTGCGGGAAAAGAGAGGTGTACACTGATTGG
TCCATGAGGTTACCTGAATAGACTACATCCGTTACTCAAGCTATCTTGAG
GACTGCTGGCTCAGTGTCAATGAACGCTCGGTGGTAAACGCCATCGGTGC
GCAATTGCGTTACCTGATGAAATGTTGATTGTCCTGATGGCGGTTGACGG
TAGAGATGGACGCCGTTGCGGAAAGCGAGATGTTTGAGAGCACACCGGGA
GTACGTACCAGATTCAGCCTGGGTTGGGAGAATGAGCAGGCCGACGCGGG
ACGGGACTACCGAACCCATCTCGCGAGACCAAATTATCAGGCGCGAACGG
GAACCGGGGAAAAAATATTTTCCCTGTTAGTTGACCACAAGCAGGAGGCA
ACCATACATCCGATTGATCCTTACTCTGTTACCAGGTATATGTGATAACC
GCACACCTTTCCGTCCATCGTGCAATCCTCGTCCTAGCAGGCATCGTTGA
CGAGTACGGACTAGGCGTCCCCAAAAATCAGCGCAGGGCGGCCGAGTGGC
ACTACCTTGCGGTGGACCAAGGATTAGCAGATTCGAACAACCACTTGGGC
CTGATGAAGGCTCACGGCAAGGGATTTTCGCAAGACCTCACCGGGGCTGC
GAGACACTTCCAGAAGGTGATCATCCATCCCATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102942:300..2286-

>mRNA_H-elongata_contig102942.251.1 ID=mRNA_H-elongata_contig102942.251.1|Name=mRNA_H-elongata_contig102942.251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig102942:300..2286- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGTCGGGACCACCGCGCAGCGACGGCCTGGTTCAAACTAGCTGC
TAGCGAAGGCCACATAGATGCTATGTGGCTCCTGGGAAGGGAGGCAGTCG
GGACCACCGCGCAGCGACGGCCTGGTTCAAACTAGCTGCTAGCGAAGGCC
ACATAGATGCTATGTGGCTCCTGGGAAGAATGTACTACGAAGGAAAGGGC
GTTGGCGTGGTTGATTTTGGGGAAGCCAACGAGAATGTACTACGAAGGAA
AGGGCGTTGGCGTGGTTGATTTTGGGGAAGCCAACGAGTGGTTCCACCGT
GCGGCTGCCAAGGGCAGCGCAGAAGGCCAGCACTACCTGGTGGTTCCACC
GTGCGGCTGCCAAGGGCAGCGCAGAAGGCCAGCACTACCTGGCAGGCATC
GTTGACGAGTACGGACTAGGCGTCCCCAAAAATCAGCGCAGGGCGGCCGA
GTGGCACTACCTTGCGGTGGACCAAGGATTAGCAGATTCGAACAACCACT
TGGGCCTGATGAAGGCTCACGGCAAGGGATTTTCGCAAGACCTCACCGGG
GCTGCGAGACACTTCCAGAAGGTGATCATCCATCCCATGTAACAGGCATC
GTTGACGAGTACGGACTAGGCGTCCCCAAAAATCAGCGCAGGGCGGCCGA
GTGGCACTACCTTGCGGTGGACCAAGGATTAGCAGATTCGAACAACCACT
TGGGCCTGATGAAGGCTCACGGCAAGGGATTTTCGCAAGACCTCACCGGG
GCTGCGAGACACTTCCAGAAGGTGATCATCCATCCCATGTAA
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