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Homology
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 7.280e-129 Identity = 241/491 (49.08%), Postives = 283/491 (57.64%), Query Frame = 3
Query: 195 SGGTFDQFVMSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKKVKIPVKKHFLAHNMPKILERLFQ-SAGIEEGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGVIDQ-------------------------------------------------------------------------------------------------------------------------------KNMKKAIVKFAAGYASRACRYFAWCVRAARERVETSVDGSVTLAEAFTESFAHLVFHLQGVHKYCSSGCAEAEEEIVE-EEPRPGQVEQPDIFDIEALRGASESGLGASAMPQNPAARGTPGAGDADAFLTGDVDRDGAKKSGKKKLRPCVGSQFTAASLRQSLDDAVDLSTVKEKLWDRILLSISSEREAG 1280
+G TF+ MSQEMGD+ S T+RTLQ+HI+ VVAVDES++E+F++VR K E GR+ V+IP++KHF AH+M +LE L Q G+++G+I NTTYPEIAA +IAA++ +R+ PGF ++ G V TL+++SFDGSYRNRNH SHGVNV+ S KR PD RGLMD V+DQ KNMKKAIVKFA+GYASRACRYFAW VR ARE VE VD S+TLAEAFTE FAHLVFHLQGVHKYCSSGCA AEE + E EEPR G VEQPDIFDIE LR SE LGA+AMPQNP R TPGAGDA+A V D AKK GKK LRPC GSQFTAASLRQ+LDD V LS VKE+LW R+ L+I R AG
Sbjct: 610 AGSTFEHVEMSQEMGDIQSPTSRTLQRHIEETVVAVDESWEEMFKEVRKSIKNEPGRRTVEIPIEKHFFAHHMVSLLEELKQYGVGVKDGSIDNTTYPEIAAGIIAAKTAKREGPGFQLE--GGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRGLMDSVLDQVTFGRHIGEDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEEEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELRVDSEPDLGATAMPQNPVTRATPGAGDAEASSAAGVGEDVAKKGGKKSLRPCRGSQFTAASLRQTLDDTVSLSKVKEQLWVRVSLTILFFRAAG 1098
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE) HSP 1 Score: 311 bits (797), Expect = 2.720e-97 Identity = 195/432 (45.14%), Postives = 218/432 (50.46%), Query Frame = 3
Query: 456 EGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGVIDQ------------------------------------------------------------------------------------------------------------------------------------------------------------KNMKKAIVKFAAGYASRACRYFAWCVRAARERVETSVDGSVTLAEAFTESFAHLVFHLQGVHKYCSSGCAEAEEEIVE-EEPRPGQVEQPDIFDIEALRGASESGLGASAMPQNPAARGTPGAGDADAFLTGDVDRDGAKKSGKKKLRPCVGSQFTAASLRQSLDDAVDLSTVKEKLWDRILLSISSEREAG 1280
+G+I NTTYPEIAA +IAA++ +R+ PGF ++ G V TL+++SFDGSYRNRNH SHGVNV+ S KRM PD RGLMD V+DQ KNMKKAIVKFA+GYASRACRYFAW VR ARE VE VD S+TLAEAFTE FAHLVFHLQGVHKYCSSGCA AEE + E EEPR G VEQPDIFDIE LR SE LGA+AMPQNP R TPGAGDA+A V D AKK GKK LRPC GSQFTAASLRQ+LDD V LS VKE+LW R+ L+I R AG
Sbjct: 2 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLE--GGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTFGRHIGKDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELRVDSEPDLGATAMPQNPVTRATPGAGDAEASSAAGVGEDVAKKGGKKSLRPCRGSQFTAASLRQTLDDTVSLSKVKEQLWVRVSLTILFFRAAG 431
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.700e-30 Identity = 73/187 (39.04%), Postives = 110/187 (58.82%), Query Frame = 3
Query: 147 HILSGVPNVRR---GIWAPSGGTFDQFVMSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKKVKIPVKKHFLAHNMPKILERLFQSAGIEEGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGV 698
H+ PNV+ G+ +GG DQ+V + D + + RTL +++ I VAVD F +K R G K E GR +++P++KH+ AHN ++ E + I+EG I NTT+ +IA L+ + R + PG+ V+ D V VT ++V+FDGSYRNRNH +H +NV+ S K ++RGL D V
Sbjct: 541 HVPVSKPNVKSVALGVLL-AGGNVDQYVNCNALSDWQAPSKRTLYRYLTEISVAVDVVFSREMKKHREGLKQEPGRGVIRVPIEKHYFAHNETRLKELAKEQGPIKEGHISNTTWTDIAVGLLRSMEDRGEEPGYKVEGD--VVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAV 724
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1282 |
| Cds size | 1059 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929565.5978675-UTR-H-elongata_contig10285:2675..2870 | 1622929565.5978675-UTR-H-elongata_contig10285:2675..2870 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10285 2676..2870 + |
| 1691679072.7697687-UTR-H-elongata_contig10285:2675..2870 | 1691679072.7697687-UTR-H-elongata_contig10285:2675..2870 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10285 2676..2870 + |
| 1622929565.6122782-UTR-H-elongata_contig10285:2919..2945 | 1622929565.6122782-UTR-H-elongata_contig10285:2919..2945 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10285 2920..2945 + |
| 1691679072.779819-UTR-H-elongata_contig10285:2919..2945 | 1691679072.779819-UTR-H-elongata_contig10285:2919..2945 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10285 2920..2945 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929565.6251822-CDS-H-elongata_contig10285:2945..3179 | 1622929565.6251822-CDS-H-elongata_contig10285:2945..3179 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 2946..3179 + |
| 1691679072.7894704-CDS-H-elongata_contig10285:2945..3179 | 1691679072.7894704-CDS-H-elongata_contig10285:2945..3179 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 2946..3179 + |
| 1622929565.639277-CDS-H-elongata_contig10285:3371..3503 | 1622929565.639277-CDS-H-elongata_contig10285:3371..3503 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 3372..3503 + |
| 1691679072.807993-CDS-H-elongata_contig10285:3371..3503 | 1691679072.807993-CDS-H-elongata_contig10285:3371..3503 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 3372..3503 + |
| 1622929565.650516-CDS-H-elongata_contig10285:3747..3867 | 1622929565.650516-CDS-H-elongata_contig10285:3747..3867 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 3748..3867 + |
| 1691679072.8157117-CDS-H-elongata_contig10285:3747..3867 | 1691679072.8157117-CDS-H-elongata_contig10285:3747..3867 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 3748..3867 + |
| 1622929565.6665726-CDS-H-elongata_contig10285:4437..4615 | 1622929565.6665726-CDS-H-elongata_contig10285:4437..4615 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 4438..4615 + |
| 1691679072.823464-CDS-H-elongata_contig10285:4437..4615 | 1691679072.823464-CDS-H-elongata_contig10285:4437..4615 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 4438..4615 + |
| 1622929565.687886-CDS-H-elongata_contig10285:4750..5145 | 1622929565.687886-CDS-H-elongata_contig10285:4750..5145 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 4751..5145 + |
| 1691679072.832138-CDS-H-elongata_contig10285:4750..5145 | 1691679072.832138-CDS-H-elongata_contig10285:4750..5145 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10285 4751..5145 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10285.247.1 >prot_H-elongata_contig10285.247.1 ID=prot_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=353bp
MSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKK VKIPVKKHFLAHNMPKILERLFQSAGIEEGAIYNTTYPEIAACLIAARSG RRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSP DDRGLMDGVIDQKNMKKAIVKFAAGYASRACRYFAWCVRAARERVETSVD GSVTLAEAFTESFAHLVFHLQGVHKYCSSGCAEAEEEIVEEEPRPGQVEQ PDIFDIEALRGASESGLGASAMPQNPAARGTPGAGDADAFLTGDVDRDGA KKSGKKKLRPCVGSQFTAASLRQSLDDAVDLSTVKEKLWDRILLSISSER EAG back to topmRNA from alignment at H-elongata_contig10285:2676..5145+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10285.247.1 ID=mRNA_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2470bp|location=Sequence derived from alignment at H-elongata_contig10285:2676..5145+ (Himanthalia elongata Himel1 dioecious) GGCAAATCCGGACAAAACAAACACGTGGGCATCCCGGTTTCGGTGCAAGG
GCTGTTGAACATGTTGGGCGCGGTGCACAGGAAGTCGTGTGGGTGTAGTG
GTCCTTTGGGAAACCCGGAGATGGGGCGCGGTAGGTCGGACTACGACACA
TTCTCAGCGGAGTGCCTAATGTGCGGCGCGGTATTTGGGCACCTTGCCCT
GGAAAAACCCGACTCCAAGTCACTCAGTCTTGGGTGCTTATTAGCGGGTG
GTACCTTCGACCAGTTCGTGATGTCACAAGAGATGGGCGACATGCACAGC
GCCACAGCCAGAACTCTTCAGAAGCACATTGACCCAATTGTAGTGGCAGT
GGATGAATCGTTTGACGAGGTGTTCCGGAAAGTGAGGATGGGGTTCAAGT
GTGAGAAAGGGAGGAAGAAAGTTAAGATACCGGTCAAGAAGCACTTCCTC
GCGCACAACATGCCCAAGATTCTGGAGCGGCTCTTCCAGAGCGCCGGCAT
CGAGGTAAGCTCTTGACGTCGGACAGGGTCTTGGGTTTGACACGTCGTGA
AGGTCGGACAACACACCGCAAGCATCGCAAGACGGACTAGAATGAAGTCG
GAAGCCAACAACTACATGAGGAACTTGTTTACGATGGTCGTCCTTGCGCG
ACCCTTTCGTACGTTGCTTCGCTTACGTTTGTCGGGGACCGTACAGGAGG
GAGCGATCTACAACACCACGTATCCGGAGATCGCGGCATGCCTCATCGCG
GCCAGGTCAGGAAGGCGCGACGCGCCTGGTTTCCACGTGGATAAGGACAG
CGGAACGGTCGAAGTGACACTAATCGATGTGCGTACCTGCCTTTGGGAGG
CAGTGGGGCTGTTGATTTCTATGTCTACGCTAGTCTATATAATATCCCAT
GGTTCAATACTCTAGAGAGGCACATTGCCGAGACCATTAGGGTTGCAACT
AATCGTAATCCCGTGTTTGTTCCCTTCCCACACACAAGGAATTGTCGCTG
TCCCTCTGTTATTGTCTTCTTATTTATCCGTCCTTTATGCGCCATCACGC
ACGCACCACTACCGCCCCCCAGGTCTCCTTCGACGGATCGTATCGCAACC
GCAACCACGCCTCACACGGCGTCAACGTCATCGTGTCTGGGAAGCGCATG
TCCCCGGACGATCGGGGTCTCATGGATGGCGTCATCGATCAGGTAACCTT
CGGTCGCCATATCAGGCCTGATGCCCCGCTTCAGCCCGTTTGCGCTCTCA
GCCGAAAATCGAGCAGGGGCTACTGCTTTGTCCACGGGAAGCCGGAAGAG
TGGGCTAGGCTGACGCGCCCTTCGGAGGAGGCGTCGACCGTCGAGAAGGA
GAAAGCACAACGACTCCGCAACGCCAACTGCTACTCGTCCACATGCCTGC
GCAGCCCTCTCAGCGCCCCGGCAACCGAGCCCTTAGGTATAATCACCTTA
TGCCTTCGGCTGATGATGGACGGGTTCTGGATCAACGCGTTTGCGCACGA
CCAGGATGCAGGCATCGGACACATCGTGCGAGACATGTTCGACAACGCAC
TCGAGTGTCTGGACAGGGCTCACATCCAGGTCCGTATCGACCTGGCACGT
TCTCGTACACAACAGTTCGAACCGGGTTCGCCGTTAGGCTCCCTCGTGCC
CTCATAGTCGTTCGATATTTCGAACCGAGTTCAAGGGGTAGGCGCCTATC
ACGTGTTACGCACATTGTATTAAATCCCTTCCTCGCGCGGGTCTGCCCTT
GGTATTTCACAGAAGAACATGAAGAAGGCCATCGTCAAGTTCGCTGCGGG
CTATGCTAGCAGGGCTTGCCGGTACTTCGCGTGGTGCGTCCGGGCAGCCA
GGGAGAGGGTGGAGACAAGCGTGGACGGCAGCGTCACCCTCGCCGAGGCT
TTTACCGAGAGCTTCGCGCACCTCGTATTCCACCTGCAAGGTACGAGTAT
ACGATATGAAGTTCCGAGAAGTATCCATGCCGTAAACCCAGCCAGCCTTA
CCCTAAACCGATATTTGTTAGCTCTTTGGTGCTAATACTCCGTCGACGAA
CGCATTGTTGTCCTCGGACATTCAGGCGTTCATAAGTACTGCTCCTCGGG
GTGCGCCGAGGCAGAGGAAGAGATCGTCGAAGAGGAGCCTCGGCCGGGAC
AGGTGGAGCAGCCCGACATCTTCGACATCGAAGCGCTGCGGGGGGCGTCG
GAGTCGGGCTTGGGCGCAAGCGCGATGCCGCAAAACCCCGCCGCGAGAGG
CACACCGGGTGCCGGTGACGCCGATGCCTTTTTGACGGGCGACGTCGATC
GAGACGGGGCCAAGAAGAGCGGGAAGAAGAAGCTACGGCCATGTGTTGGA
TCGCAGTTCACGGCCGCGAGCCTCAGACAGTCGTTGGACGACGCAGTCGA
CCTGTCCACAGTCAAGGAGAAATTGTGGGACAGAATCTTGTTAAGCATAA
GCTCCGAGAGGGAGGCGGGG back to topCoding sequence (CDS) from alignment at H-elongata_contig10285:2676..5145+ >mRNA_H-elongata_contig10285.247.1 ID=mRNA_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at H-elongata_contig10285:2676..5145+ (Himanthalia elongata Himel1 dioecious) ATGTCACAAGAGATGGGCGACATGCACAGCGCCACAGCCAGAACTCTTCA GAAGCACATTGACCCAATTGTAGTGGCAGTGGATGAATCGTTTGACGAGG TGTTCCGGAAAGTGAGGATGGGGTTCAAGTGTGAGAAAGGGAGGAAGAAA GTTAAGATACCGGTCAAGAAGCACTTCCTCGCGCACAACATGCCCAAGAT TCTGGAGCGGCTCTTCCAGAGCGCCGGCATCGAGATGTCACAAGAGATGG GCGACATGCACAGCGCCACAGCCAGAACTCTTCAGAAGCACATTGACCCA ATTGTAGTGGCAGTGGATGAATCGTTTGACGAGGTGTTCCGGAAAGTGAG GATGGGGTTCAAGTGTGAGAAAGGGAGGAAGAAAGTTAAGATACCGGTCA AGAAGCACTTCCTCGCGCACAACATGCCCAAGATTCTGGAGCGGCTCTTC CAGAGCGCCGGCATCGAGGAGGGAGCGATCTACAACACCACGTATCCGGA GATCGCGGCATGCCTCATCGCGGCCAGGTCAGGAAGGCGCGACGCGCCTG GTTTCCACGTGGATAAGGACAGCGGAACGGTCGAAGTGACACTAATCGAT GAGGGAGCGATCTACAACACCACGTATCCGGAGATCGCGGCATGCCTCAT CGCGGCCAGGTCAGGAAGGCGCGACGCGCCTGGTTTCCACGTGGATAAGG ACAGCGGAACGGTCGAAGTGACACTAATCGATGTCTCCTTCGACGGATCG TATCGCAACCGCAACCACGCCTCACACGGCGTCAACGTCATCGTGTCTGG GAAGCGCATGTCCCCGGACGATCGGGGTCTCATGGATGGCGTCATCGATC AGGTCTCCTTCGACGGATCGTATCGCAACCGCAACCACGCCTCACACGGC GTCAACGTCATCGTGTCTGGGAAGCGCATGTCCCCGGACGATCGGGGTCT CATGGATGGCGTCATCGATCAGAAGAACATGAAGAAGGCCATCGTCAAGT TCGCTGCGGGCTATGCTAGCAGGGCTTGCCGGTACTTCGCGTGGTGCGTC CGGGCAGCCAGGGAGAGGGTGGAGACAAGCGTGGACGGCAGCGTCACCCT CGCCGAGGCTTTTACCGAGAGCTTCGCGCACCTCGTATTCCACCTGCAAG AAGAACATGAAGAAGGCCATCGTCAAGTTCGCTGCGGGCTATGCTAGCAG GGCTTGCCGGTACTTCGCGTGGTGCGTCCGGGCAGCCAGGGAGAGGGTGG AGACAAGCGTGGACGGCAGCGTCACCCTCGCCGAGGCTTTTACCGAGAGC TTCGCGCACCTCGTATTCCACCTGCAAGGCGTTCATAAGTACTGCTCCTC GGGGTGCGCCGAGGCAGAGGAAGAGATCGTCGAAGAGGAGCCTCGGCCGG GACAGGTGGAGCAGCCCGACATCTTCGACATCGAAGCGCTGCGGGGGGCG TCGGAGTCGGGCTTGGGCGCAAGCGCGATGCCGCAAAACCCCGCCGCGAG AGGCACACCGGGTGCCGGTGACGCCGATGCCTTTTTGACGGGCGACGTCG ATCGAGACGGGGCCAAGAAGAGCGGGAAGAAGAAGCTACGGCCATGTGTT GGATCGCAGTTCACGGCCGCGAGCCTCAGACAGTCGTTGGACGACGCAGT CGACCTGTCCACAGTCAAGGAGAAATTGTGGGACAGAATCTTGTTAAGCA TAAGCTCCGAGAGGGAGGCGGGGGCGTTCATAAGTACTGCTCCTCGGGGT GCGCCGAGGCAGAGGAAGAGATCGTCGAAGAGGAGCCTCGGCCGGGACAG GTGGAGCAGCCCGACATCTTCGACATCGAAGCGCTGCGGGGGGCGTCGGA GTCGGGCTTGGGCGCAAGCGCGATGCCGCAAAACCCCGCCGCGAGAGGCA CACCGGGTGCCGGTGACGCCGATGCCTTTTTGACGGGCGACGTCGATCGA GACGGGGCCAAGAAGAGCGGGAAGAAGAAGCTACGGCCATGTGTTGGATC GCAGTTCACGGCCGCGAGCCTCAGACAGTCGTTGGACGACGCAGTCGACC TGTCCACAGTCAAGGAGAAATTGTGGGACAGAATCTTGTTAAGCATAAGC TCCGAGAGGGAGGCGGGG back to top
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