mRNA_H-elongata_contig10285.247.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 7.280e-129 Identity = 241/491 (49.08%), Postives = 283/491 (57.64%), Query Frame = 3 Query: 195 SGGTFDQFVMSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKKVKIPVKKHFLAHNMPKILERLFQ-SAGIEEGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGVIDQ-------------------------------------------------------------------------------------------------------------------------------KNMKKAIVKFAAGYASRACRYFAWCVRAARERVETSVDGSVTLAEAFTESFAHLVFHLQGVHKYCSSGCAEAEEEIVE-EEPRPGQVEQPDIFDIEALRGASESGLGASAMPQNPAARGTPGAGDADAFLTGDVDRDGAKKSGKKKLRPCVGSQFTAASLRQSLDDAVDLSTVKEKLWDRILLSISSEREAG 1280
+G TF+ MSQEMGD+ S T+RTLQ+HI+ VVAVDES++E+F++VR K E GR+ V+IP++KHF AH+M +LE L Q G+++G+I NTTYPEIAA +IAA++ +R+ PGF ++ G V TL+++SFDGSYRNRNH SHGVNV+ S KR PD RGLMD V+DQ KNMKKAIVKFA+GYASRACRYFAW VR ARE VE VD S+TLAEAFTE FAHLVFHLQGVHKYCSSGCA AEE + E EEPR G VEQPDIFDIE LR SE LGA+AMPQNP R TPGAGDA+A V D AKK GKK LRPC GSQFTAASLRQ+LDD V LS VKE+LW R+ L+I R AG
Sbjct: 610 AGSTFEHVEMSQEMGDIQSPTSRTLQRHIEETVVAVDESWEEMFKEVRKSIKNEPGRRTVEIPIEKHFFAHHMVSLLEELKQYGVGVKDGSIDNTTYPEIAAGIIAAKTAKREGPGFQLE--GGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRGLMDSVLDQVTFGRHIGEDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEEEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELRVDSEPDLGATAMPQNPVTRATPGAGDAEASSAAGVGEDVAKKGGKKSLRPCRGSQFTAASLRQTLDDTVSLSKVKEQLWVRVSLTILFFRAAG 1098
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE) HSP 1 Score: 311 bits (797), Expect = 2.720e-97 Identity = 195/432 (45.14%), Postives = 218/432 (50.46%), Query Frame = 3 Query: 456 EGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGVIDQ------------------------------------------------------------------------------------------------------------------------------------------------------------KNMKKAIVKFAAGYASRACRYFAWCVRAARERVETSVDGSVTLAEAFTESFAHLVFHLQGVHKYCSSGCAEAEEEIVE-EEPRPGQVEQPDIFDIEALRGASESGLGASAMPQNPAARGTPGAGDADAFLTGDVDRDGAKKSGKKKLRPCVGSQFTAASLRQSLDDAVDLSTVKEKLWDRILLSISSEREAG 1280
+G+I NTTYPEIAA +IAA++ +R+ PGF ++ G V TL+++SFDGSYRNRNH SHGVNV+ S KRM PD RGLMD V+DQ KNMKKAIVKFA+GYASRACRYFAW VR ARE VE VD S+TLAEAFTE FAHLVFHLQGVHKYCSSGCA AEE + E EEPR G VEQPDIFDIE LR SE LGA+AMPQNP R TPGAGDA+A V D AKK GKK LRPC GSQFTAASLRQ+LDD V LS VKE+LW R+ L+I R AG
Sbjct: 2 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLE--GGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTFGRHIGKDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELRVDSEPDLGATAMPQNPVTRATPGAGDAEASSAAGVGEDVAKKGGKKSLRPCRGSQFTAASLRQTLDDTVSLSKVKEQLWVRVSLTILFFRAAG 431
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.700e-30 Identity = 73/187 (39.04%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 147 HILSGVPNVRR---GIWAPSGGTFDQFVMSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKKVKIPVKKHFLAHNMPKILERLFQSAGIEEGAIYNTTYPEIAACLIAARSGRRDAPGFHVDKDSGTVEVTLIDVSFDGSYRNRNHASHGVNVIVSGKRMSPDDRGLMDGV 698
H+ PNV+ G+ +GG DQ+V + D + + RTL +++ I VAVD F +K R G K E GR +++P++KH+ AHN ++ E + I+EG I NTT+ +IA L+ + R + PG+ V+ D V VT ++V+FDGSYRNRNH +H +NV+ S K ++RGL D V
Sbjct: 541 HVPVSKPNVKSVALGVLL-AGGNVDQYVNCNALSDWQAPSKRTLYRYLTEISVAVDVVFSREMKKHREGLKQEPGRGVIRVPIEKHYFAHNETRLKELAKEQGPIKEGHISNTTWTDIAVGLLRSMEDRGEEPGYKVEGD--VVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAV 724 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10285.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10285.247.1 >prot_H-elongata_contig10285.247.1 ID=prot_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=353bp MSQEMGDMHSATARTLQKHIDPIVVAVDESFDEVFRKVRMGFKCEKGRKKback to top mRNA from alignment at H-elongata_contig10285:2676..5145+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10285.247.1 ID=mRNA_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2470bp|location=Sequence derived from alignment at H-elongata_contig10285:2676..5145+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10285:2676..5145+ >mRNA_H-elongata_contig10285.247.1 ID=mRNA_H-elongata_contig10285.247.1|Name=mRNA_H-elongata_contig10285.247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at H-elongata_contig10285:2676..5145+ (Himanthalia elongata Himel1 dioecious)back to top |