mRNA_H-elongata_contig102774.240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102774.240.1
Unique NamemRNA_H-elongata_contig102774.240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102774.240.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.960e-10
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   52 TLDKANVRHCIPQAPRLVDASAAGPNALIVAWSGVPSPTSGCTVSSYRVEV 204
            T  ++ V    P AP +VDASAAGPN L+V WSGVPS  SG TVSSYR+EV
Sbjct: 8303 TTPRSMVPRAAPGAPGMVDASAAGPNDLMVTWSGVPSSISGSTVSSYRIEV 8353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102774.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNA6_ECTSI3.960e-1062.75Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102774contigH-elongata_contig102774:203..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7FNA6
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.0034416-CDS-H-elongata_contig102774:202..3941622929565.0034416-CDS-H-elongata_contig102774:202..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102774 203..394 -
1691679072.5878978-CDS-H-elongata_contig102774:202..3941691679072.5878978-CDS-H-elongata_contig102774:202..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102774 203..394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.0331438-UTR-H-elongata_contig102774:394..4061622929565.0331438-UTR-H-elongata_contig102774:394..406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102774 395..406 -
1691679072.604845-UTR-H-elongata_contig102774:394..4061691679072.604845-UTR-H-elongata_contig102774:394..406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102774 395..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102774.240.1prot_H-elongata_contig102774.240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102774 203..394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102774.240.1

>prot_H-elongata_contig102774.240.1 ID=prot_H-elongata_contig102774.240.1|Name=mRNA_H-elongata_contig102774.240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MCMLLVSDAYDLRTLDKANVRHCIPQAPRLVDASAAGPNALIVAWSGVPS
PTSGCTVSSYRVEV
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mRNA from alignment at H-elongata_contig102774:203..406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102774.240.1 ID=mRNA_H-elongata_contig102774.240.1|Name=mRNA_H-elongata_contig102774.240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig102774:203..406- (Himanthalia elongata Himel1 dioecious)
TATCAATACAGCATGTGTATGTTGCTTGTCAGTGATGCGTATGACCTCAG
GACTCTAGATAAAGCTAATGTTCGCCATTGTATCCCACAGGCACCGCGAC
TCGTGGACGCAAGTGCTGCCGGGCCCAACGCGCTCATAGTAGCCTGGTCT
GGAGTGCCTTCACCAACAAGCGGCTGCACAGTATCCTCGTACCGGGTAGA
GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig102774:203..406-

>mRNA_H-elongata_contig102774.240.1 ID=mRNA_H-elongata_contig102774.240.1|Name=mRNA_H-elongata_contig102774.240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig102774:203..406- (Himanthalia elongata Himel1 dioecious)
ATGTGTATGTTGCTTGTCAGTGATGCGTATGACCTCAGGACTCTAGATAA
AGCTAATGTTCGCCATTGTATCCCACAGGCACCGCGACTCGTGGACGCAA
GTGCTGCCGGGCCCAACGCGCTCATAGTAGCCTGGTCTGGAGTGCCTTCA
CCAACAAGCGGCTGCACAGTATCCTCGTACCGGGTAGAGGTAATGTGTAT
GTTGCTTGTCAGTGATGCGTATGACCTCAGGACTCTAGATAAAGCTAATG
TTCGCCATTGTATCCCACAGGCACCGCGACTCGTGGACGCAAGTGCTGCC
GGGCCCAACGCGCTCATAGTAGCCTGGTCTGGAGTGCCTTCACCAACAAG
CGGCTGCACAGTATCCTCGTACCGGGTAGAGGTA
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