|
|
Homology
BLAST of mRNA_H-elongata_contig10276.239.1 vs. uniprot
Match: A0A6H5KJY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY1_9PHAE) HSP 1 Score: 551 bits (1420), Expect = 3.830e-170 Identity = 505/1170 (43.16%), Postives = 621/1170 (53.08%), Query Frame = 2
Query: 2 GDKSKRFMMVGAKDNLPAGSRSGVVAPVPINTPSLRQEIHGTKDDNAAMGSINRSNAGTGWGSAAANTSTATGNATDYVSMRSRGTGANTG-----GDDAFTRHFPDLRTGLEQAERLDAATKASTKVAPLRKQKPESTIDQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIAEAVHNRAASTPKTEEFRRKSPSFAEEISGSRSRWTERTPLKEGGVKGRVGGGRGAAGDXXXXXXXXXXXXXRERG-----GGRSANAVHDRDRKVPRDSYQDKDFGKNFRQAPERIAGGNTRTRESSFGSRAH-GTANSDQDGQSANVKPL-TTTYVRQHGPPPRRAAQAGVGASQSPTRQEHQPPPTKQPTRSSAYSAS--TRPELPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAIECSLSQSTLLVHGAGSKGRIGEQDE-LETRAQL----HDAREEDTCRFECSWGGSEQGRAAVDGDYSGSGDVERTLNERWKEYTPGSLSPRSAPTSTRWKETNDELRA-SRRWNCKEESHVDGGKRDKST-EDDDVGSSCVVTPAMASSTQSQSSSWRGTADDGWGADAVEQD-GDAGM-LTVSTTEGVEQQD-----------VVSETTVSAETIMPLHKVETIAGPATLAKADDSNEDHASVQGPLVAQQQVQQVAEATQPAVRTTSWEPQL--SVGTELWEPASHGSDSLPSSSQGPGQMGSSGSGSASQPWRDPWGTSGFGLPSGGD--------FLGNGPSETQKGRYLPPALRNRTPGERNHVEHDTETISPAMPQDVSTAQ----DGSTADVSTQDLVVIQG-----IPSSGTAVGSTHMFEQHQQTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEWQH----ATSHRVEERTESPGDRALHRSQAMQQSQQVQRAQPLHLGDQPHIDRNYRPSPSTAFS-FQNPDRHQHPIQESPLHHQFQAEHYHAQSYHSQQDQTGRASVSEHLNRSHFQPDHV----HQFNQLQIQQPVHVSQHRAPHSLHXXXXXXXXXXXXXXXXXXPGPLGGQVAHPRQQPQHHQ---DMGR-SSQAQHLHMQRQQRHISRQSP--AFMMSSQGMSYSDPRTPRGDGGLGGLPVQMTGAYRDGPQ----------------PGSYGFTPPDQHRKR 3259
GDK+KR+MMVG KD LPAG+++GVVAPVPINTPSLRQEI G +NA +INRS +G GWGSA ++++A A V+ G G G GDD FTRHFPDLR GLEQAE+LDA TKAS+KVAPLRK K E DQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIA+AVHNR A+ PK EE RR SFA+EIS ++SRW ER P +EGG + R G GRG G +ERG GGR +R + RD++ +K+ ++FRQ R A +TR RES FGS AH G A+S QD S +TTYVRQHGPPPR+AA + +P Q+ QP ++QPTRSSAYSAS + + + SQS V G G GR G+ DE +ET HDA E T RF SWG EQG+ A+D D S +ERT + RWKE GSL+P PT+TRWKE +E RA +RRW +E+ + GG+ +S ED D+ S P MAS T SQ+SSW+ +ADDGWG + D GD+ M T ST+E +EQQ+ V + VS+E P ++ S ED S G QQQ P + +SWEPQL G +LWE ++G D + QGPGQ G+S SG +SQPW DPWGTSGFGL + GD FL N P E +K RYLPPALRNR P N E + I P Q++ T + D ++ADVS QDLV+ G G+ ++EQ XXXXXXX EEWQ A+ +T + L + Q + QS Q +QPLHL + +++R Y+ +PS FS FQ P + P HQFQAEH +HL R +Q DH+ FNQ+QI Q +H QH A XXXXXXXXXXX HP+QQ H DM R +SQAQ +HM Q H+ Q P AFMM SQGM +DPR RG G LGGLPVQM YRD PG+YG P+ H KR
Sbjct: 12 GDKTKRYMMVGTKDALPAGAKTGVVAPVPINTPSLRQEIQG---ENAGTAAINRSGSGGGWGSAVVSSASANSAAGQSVAS-GNGKGRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEIS-TKSRWAER-PFQEGGSRVR-GAGRGTGGTWEMN---------KERGRDSGQGGRG----FERAERGRRDAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSATPSTTYVRQHGPPPRKAATPAT--TPAPAVQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSAETLSKWRSASPSNPQPAMDAPPEAPPMPDSPSSQSGSYVRGDGP-GREGQADERVETSVSSSRSDHDAGGEPTSRFGGSWGAPEQGQNAMDKDSSAG--IERTQSGRWKEPA-GSLAPPPHPTNTRWKEPKEEPRAGARRWKAREDGQMGGGRWGRSAGEDADIDDSSAAPPTMASPT-SQNSSWKESADDGWGVKVPKHDRGDSDMSATASTSEKLEQQEQPLEGGGGSVEVGAGADVSSE--KPAEGLDAXXXXXXXXXXIPS-EDTTSFGGSFAQQQQAH-------PVISKSSWEPQLPRGAGGDLWETPANGRDHH-TQQQGPGQAGASTSGGSSQPWSDPWGTSGFGLSASGDQRPGSIASFLDNAPEEPRKDRYLPPALRNRNPSHEN--EEEAANI-PLADQEIDTNRSSLSDVASADVSAQDLVLSGGGSMRTDSPDGSCAMKAPLYEQXXXXXXXXXXXXVPL-------------------EEWQQEGAQASRRSQHNQTAHAVEPQLQQQQPVHQSHQPA-SQPLHLHEHANLNRGYQRNPSEGFSSFQ-------PQMQDPGLHQFQAEHXXXXXXXXXXXXXXXXXPEQHLPRHQYQSDHLPVQRQHFNQVQIPQHMHPPQHSAXXXXXXXXXXXXXXXXHQ-------------GHPQQQVYHQGQQLDMSRQTSQAQQMHM--HQHHLQMQHPSSAFMMPSQGMG-TDPRGARGVG-LGGLPVQMAAPYRDEQXXXXXXXXSQHQAGMSAPGAYGVQSPETHHKR 1096
BLAST of mRNA_H-elongata_contig10276.239.1 vs. uniprot
Match: D8LK50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK50_ECTSI) HSP 1 Score: 366 bits (939), Expect = 3.020e-105 Identity = 267/553 (48.28%), Postives = 329/553 (59.49%), Query Frame = 2
Query: 2 GDKSKRFMMVGAKDNLPAGSRSGVVAPVPINTPSLRQEIHGTKDDNAAMGSINRSNAGTGWGSAAANTSTATGNATDYVSM-----RSRGTGANTGGDDAFTRHFPDLRTGLEQAERLDAATKASTKVAPLRKQKPESTIDQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIAEAVHNRAASTPKTEEFRRKSPSFAEEISGSRSRWTERTPLKEGGVKGRVGGGRGAAGDXXXXXXXXXXXXXRERG-----GGRSANAVHDRDRKVPRDSYQDKDFGKNFRQAPERIAGGNTRTRESSFGSRAH-GTANSDQDGQS-ANVKPLTTTYVRQHGPPPRRAAQAGVGASQSPTRQEHQPPPTKQPTRSSAYSAS--TRPELPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAIECSLSQSTLLVHGAGSKGRIGEQDELETRAQL--------HDAREEDTCRFECSWGGSEQGRAAVDGDYSGSGDVERTLNERWKEYTPGSLSPRSAPTSTRWKETNDELRA-SRRWNCKEESHVDGGKRDKSTEDD 1591
GDK+KR+MMVG KD +PAG+++GVVAPVPINTPSLRQEI G DNA +INRS +G GWGSA A++++A A R G+G G DD FTRHFPDLR GLEQAE+LDA TKAS+KVAPLRK K E DQGPSLRPRAMLKPTGSAGGGS ATAAAQAAIA+AVHNR A+ PK EE RR SFA+EIS ++SRW ER PL+EGG +GR G GRG G +ERG GGR +R + RD++ +K+ ++FRQ R A +TR RES FGS AH G A+S QD S + K +TTYVRQHGPPPR+ A + +P Q+ QP ++QPTRSSAYSAS + + + SQS V G R G + + + R + HDA E T RF SWG EQG+ A+D D S +ERT + RWKE GSL+P PT+TRWKE +E RA +RRW +E+ + GG+ +S E+D
Sbjct: 12 GDKTKRYMMVGTKDAVPAGAKTGVVAPVPINTPSLRQEIQG---DNAGTAAINRSGSGGGWGSAVASSASANSAAGQXXXXXXXXXRRDGSGRQRG-DDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEIS-TKSRWAER-PLQEGGSRGR-GAGRGTGGTWEMN---------KERGRDSGQGGRG----FERAERGRRDAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSKTPSTTYVRQHGPPPRKVATPAT--TPAPAAQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSVETPSKWRSASPSNPQPAMDAPPEAPQMPDSPSSQSGSYVRAHGPPRRSGREGQADERGETSISSSRPDHDAGGEPTSRFGGSWGAPEQGQNAMDKDSSAG--IERTQSGRWKEPA-GSLAPPPHPTNTRWKEPKEEPRAGARRWKAREDGQMGGGRWGRSAEED 539
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_008190.1 |
| Exons | 6 |
| Model size | 4682 |
| Cds size | 3240 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929564.8567224-UTR-H-elongata_contig10276:1216..2636 | 1622929564.8567224-UTR-H-elongata_contig10276:1216..2636 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10276 1217..2636 - |
| 1691679072.494696-UTR-H-elongata_contig10276:1216..2636 | 1691679072.494696-UTR-H-elongata_contig10276:1216..2636 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10276 1217..2636 - |
| 1622929564.9598165-UTR-H-elongata_contig10276:7785..7807 | 1622929564.9598165-UTR-H-elongata_contig10276:7785..7807 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10276 7786..7807 - |
| 1691679072.574239-UTR-H-elongata_contig10276:7785..7807 | 1691679072.574239-UTR-H-elongata_contig10276:7785..7807 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10276 7786..7807 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929564.870761-CDS-H-elongata_contig10276:2636..3038 | 1622929564.870761-CDS-H-elongata_contig10276:2636..3038 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 2637..3038 - |
| 1691679072.5079162-CDS-H-elongata_contig10276:2636..3038 | 1691679072.5079162-CDS-H-elongata_contig10276:2636..3038 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 2637..3038 - |
| 1622929564.884873-CDS-H-elongata_contig10276:3654..3744 | 1622929564.884873-CDS-H-elongata_contig10276:3654..3744 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 3655..3744 - |
| 1691679072.5168087-CDS-H-elongata_contig10276:3654..3744 | 1691679072.5168087-CDS-H-elongata_contig10276:3654..3744 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 3655..3744 - |
| 1622929564.897314-CDS-H-elongata_contig10276:4243..4330 | 1622929564.897314-CDS-H-elongata_contig10276:4243..4330 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4244..4330 - |
| 1691679072.5261302-CDS-H-elongata_contig10276:4243..4330 | 1691679072.5261302-CDS-H-elongata_contig10276:4243..4330 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4244..4330 - |
| 1622929564.907909-CDS-H-elongata_contig10276:4727..4823 | 1622929564.907909-CDS-H-elongata_contig10276:4727..4823 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4728..4823 - |
| 1691679072.5386002-CDS-H-elongata_contig10276:4727..4823 | 1691679072.5386002-CDS-H-elongata_contig10276:4727..4823 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4728..4823 - |
| 1622929564.9247596-CDS-H-elongata_contig10276:4975..7128 | 1622929564.9247596-CDS-H-elongata_contig10276:4975..7128 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4976..7128 - |
| 1691679072.5546486-CDS-H-elongata_contig10276:4975..7128 | 1691679072.5546486-CDS-H-elongata_contig10276:4975..7128 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 4976..7128 - |
| 1622929564.9423642-CDS-H-elongata_contig10276:7373..7785 | 1622929564.9423642-CDS-H-elongata_contig10276:7373..7785 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 7374..7785 - |
| 1691679072.5644624-CDS-H-elongata_contig10276:7373..7785 | 1691679072.5644624-CDS-H-elongata_contig10276:7373..7785 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10276 7374..7785 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10276.239.1 >prot_H-elongata_contig10276.239.1 ID=prot_H-elongata_contig10276.239.1|Name=mRNA_H-elongata_contig10276.239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1080bp
MMVGAKDNLPAGSRSGVVAPVPINTPSLRQEIHGTKDDNAAMGSINRSNA
GTGWGSAAANTSTATGNATDYVSMRSRGTGANTGGDDAFTRHFPDLRTGL
EQAERLDAATKASTKVAPLRKQKPESTIDQGPSLRPRAMLKPTGSAGGGS
VATAAAQAAIAEAVHNRAASTPKTEEFRRKSPSFAEEISGSRSRWTERTP
LKEGGVKGRVGGGRGAAGDRGSGGSWESSGTYRERGGGRSANAVHDRDRK
VPRDSYQDKDFGKNFRQAPERIAGGNTRTRESSFGSRAHGTANSDQDGQS
ANVKPLTTTYVRQHGPPPRRAAQAGVGASQSPTRQEHQPPPTKQPTRSSA
YSASTRPELPSETFEPLRAPSETSSKWRSFSSPSAQPIESPESTAIECSL
SQSTLLVHGAGSKGRIGEQDELETRAQLHDAREEDTCRFECSWGGSEQGR
AAVDGDYSGSGDVERTLNERWKEYTPGSLSPRSAPTSTRWKETNDELRAS
RRWNCKEESHVDGGKRDKSTEDDDVGSSCVVTPAMASSTQSQSSSWRGTA
DDGWGADAVEQDGDAGMLTVSTTEGVEQQDVVSETTVSAETIMPLHKVET
IAGPATLAKADDSNEDHASVQGPLVAQQQVQQVAEATQPAVRTTSWEPQL
SVGTELWEPASHGSDSLPSSSQGPGQMGSSGSGSASQPWRDPWGTSGFGL
PSGGDFLGNGPSETQKGRYLPPALRNRTPGERNHVEHDTETISPAMPQDV
STAQDGSTADVSTQDLVVIQGIPSSGTAVGSTHMFEQHQQTQQQPQQQAQ
QQQSQQHHQPQQQVQQQHQSLEEWQHATSHRVEERTESPGDRALHRSQAM
QQSQQVQRAQPLHLGDQPHIDRNYRPSPSTAFSFQNPDRHQHPIQESPLH
HQFQAEHYHAQSYHSQQDQTGRASVSEHLNRSHFQPDHVHQFNQLQIQQP
VHVSQHRAPHSLHQTHQQQQGYQQGQQPQLPPGPLGGQVAHPRQQPQHHQ
DMGRSSQAQHLHMQRQQRHISRQSPAFMMSSQGMSYSDPRTPRGDGGLGG
LPVQMTGAYRDGPQPGSYGFTPPDQHRKR* back to topmRNA from alignment at H-elongata_contig10276:1217..7807- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10276.239.1 ID=mRNA_H-elongata_contig10276.239.1|Name=mRNA_H-elongata_contig10276.239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6591bp|location=Sequence derived from alignment at H-elongata_contig10276:1217..7807- (Himanthalia elongata Himel1 dioecious)
AGGTGACAAGTCCAAGCGCTTTATGATGGTAGGGGCCAAGGATAATCTAC
CAGCGGGCTCGAGATCGGGGGTGGTGGCACCTGTCCCAATCAACACCCCG
AGCTTACGTCAAGAGATCCACGGCACGAAGGATGACAATGCCGCAATGGG
CTCAATCAATCGCTCAAACGCCGGCACTGGTTGGGGCTCAGCTGCGGCTA
ATACATCGACTGCCACCGGGAACGCAACCGATTATGTATCTATGCGAAGC
AGGGGCACGGGAGCAAATACAGGCGGAGACGACGCGTTTACTCGACATTT
CCCTGATCTCCGGACGGGTCTGGAGCAAGCTGAAAGACTCGACGCCGCGA
CCAAGGCTTCTACCAAGGTTGCTCCCTTGAGGAAGCAGAAGCCCGAATCA
ACCATCGACCAAGGTCCATCACTCCGACCGAGAGGTGAAGACGCATTCGT
GGCAATAACGGTAGATTGAACGGTCAAAAGTAATATCTGGGGTCTTCTGT
CATTTATAATTTATTTCATAGGTGAGTTTTTCTGTGCTCTATTTGCGCAA
TTTGTCTTGCCCGAAGTTAAGGGAGACAAGAAATAATGCCTTACTGCCAC
CTATACCCGTGATTGGATGAATGACAAGTGCGATTCGTTCTCTTGTGATT
GACTTGCCTTACTGCCCCATGTGCGTCAGCTATGCTCAAACCCACTGGAA
GTGCAGGAGGAGGGAGCGTTGCAACAGCTGCAGCCCAGGCCGCGATAGCG
GAAGCCGTTCATAACCGCGCTGCCTCGACCCCGAAGACTGAAGAGTTCCG
CCGGAAGTCCCCAAGTTTTGCCGAAGAGATTTCAGGGAGCAGATCACGAT
GGACAGAGCGCACACCTTTGAAAGAGGGCGGGGTTAAAGGGCGTGTTGGA
GGGGGGCGAGGCGCTGCGGGAGACCGAGGTAGCGGGGGCTCTTGGGAATC
AAGTGGTACGTATCGGGAAAGAGGTGGTGGAAGGAGTGCGAATGCAGTGC
ACGACCGAGACCGAAAAGTCCCTCGAGATTCTTACCAGGACAAAGATTTC
GGGAAAAACTTCCGTCAAGCACCCGAGAGAATTGCTGGAGGTAACACCAG
AACCAGAGAGTCTAGCTTTGGCTCAAGAGCGCACGGGACAGCGAATTCTG
ACCAAGATGGCCAAAGTGCGAACGTCAAGCCCTTGACTACTACGTACGTC
CGTCAACACGGTCCTCCTCCACGCAGAGCGGCTCAGGCTGGAGTAGGTGC
GTCCCAATCGCCAACTCGGCAGGAACATCAGCCACCACCCACAAAGCAAC
CCACGAGGAGTTCGGCGTATTCAGCGTCAACACGGCCGGAGCTTCCCTCA
GAAACTTTTGAACCTTTGCGTGCACCGTCAGAGACGTCTTCGAAGTGGCG
CTCTTTCTCGTCTCCAAGTGCCCAGCCTATTGAGTCACCAGAATCGACTG
CCATCGAATGTTCACTTTCCCAGTCTACGCTACTAGTACACGGAGCTGGA
AGTAAAGGACGGATTGGCGAGCAGGACGAGCTAGAAACGCGTGCTCAACT
TCACGACGCTAGGGAAGAAGATACGTGTCGTTTTGAGTGCTCGTGGGGGG
GGTCCGAACAAGGTCGTGCTGCGGTAGATGGAGATTATTCAGGAAGTGGA
GATGTAGAGAGGACGCTAAACGAGAGGTGGAAGGAATACACTCCCGGTTC
ACTATCCCCCCGATCAGCTCCTACAAGTACCCGATGGAAGGAGACTAATG
ATGAGTTACGGGCGTCAAGGAGATGGAATTGCAAAGAGGAGAGTCATGTC
GACGGCGGTAAACGGGATAAATCTACAGAAGACGATGATGTAGGTAGCAG
TTGCGTCGTCACACCGGCCATGGCGTCGTCCACCCAATCGCAGAGCAGCT
CGTGGAGAGGGACCGCCGACGACGGTTGGGGTGCGGACGCGGTTGAGCAG
GATGGCGATGCTGGAATGCTGACCGTATCAACGACGGAAGGCGTAGAACA
GCAAGATGTGGTTAGCGAGACGACTGTTTCTGCCGAGACTATTATGCCCC
TGCACAAAGTGGAAACCATCGCCGGACCTGCGACGCTGGCTAAGGCCGAT
GACTCCAACGAGGACCATGCATCCGTTCAAGGCCCCTTGGTGGCACAACA
GCAGGTACAGCAAGTGGCCGAGGCTACGCAACCCGCGGTGCGCACAACGT
CGTGGGAGCCGCAACTTTCTGTTGGAACCGAACTTTGGGAGCCCGCAAGC
CATGGCAGCGACAGTCTACCGAGCAGCTCTCAAGGACCAGGTCAAATGGG
ATCGTCGGGCTCAGGTAGTGCGTCTCAGCCGTGGCGCGACCCCTGGGGTA
CGTCTGGGTTCGGTTTGCCGTCTGGCGGCGACTTTCTCGGCAACGGGCCT
AGTGAAACTCAAAAGGGCCGCTACTTGCCTCCCGCTCTACGGAACAGAAC
TCCTGGTGAAAGGAACCACGTCGAGCATGACACAGAAACAATTTCCCCTG
CAATGCCCCAAGATGTTTCGACAGCCCAAGATGGGTCGACGGCCGACGTT
TCCACTCAAGACCTCGTGGTGATACAGGGAATTCCTTCAAGTGGCACGGC
TGTGGGTAGTACCCATATGTTTGAGCAACATCAACAAACACAGCAGCAGC
CACAGCAACAAGCACAGCAGCAGCAGTCACAGCAGCATCATCAACCACAA
CAGCAGGTGCAACAGCAGCACCAATCCTTGGAGGAGTGGCAGCATGCGAC
ATCTCATCGGGTCGAAGAACGCACAGAAAGTCCGGGGGATCGGGCCTTAC
ATCGGAGCCAGGCCATGCAACAGTCGCAACAGGTCCAATGGAAAGCGTAG
TACGCGTATTTAGAATCAACAAGTCTTCTAGCCTGACTTCAAACTTTGCC
CTTCACTCTAATGCAACGCGTGTTGCAGCAGTTTTTTTGTTTTTGTTTTT
ACGTGTCCGTTGAATATATTGAATATATAACCAGGTCCAGCGCGCGCAAC
CCCTGCACCTTGGTGACCAGCCTCATATCGATCGCAATTACCGGCCAAGT
CCTTCAACGGCGTTCTCCTTCCAGAATCCGGTGTGTTCGTCGTCCCCATC
ATATTCATGTGCTGCGTCATGATGCAGTAGATGATGCAGTAGATGATGCA
GTAGATGATGCAGTAGAGCCTTAGACTTCGTCCCCACTCTGCCTTATCCT
TGCGGTATAGCCCGACATTGCGGCCCCCCTCTTGCCCTTTGGCGTCCTTC
TCAACATAGGAAACCCCCCAGTTTTATTTTATTTCTGACTTTATAGTGAA
AATATCGGGTACCTGCACCGATCTGTTCCTGGTACCCCGGCTTTTCCACC
CTCGCTTGCCAAACGTGGGTTATAAAAATGTGGGGAAGTTGCGACAAAGT
ACATTATATTTTTAATGATCTGTAACGCTAGTTTGATTTTAATGCTCTTT
ACATCCTTTCATTTTCTACCCTCCCAGGACCGGCACCAACATCCGATACA
AGAATCACCGCTGCATCACCAGTTCCAGGCCGAACACTATCATGCTCAGT
CTTACCATAGCCAGGTATTATATTATTAAACGGTCCATTGATGCGTACCA
GCAACACGTCGGACCCCCCCCCCCCTGTAAAAGCTCTTTTAATTGGCTAC
TGTATCTTCGAAGCCAGCTTCATTCGTTAGTCCCAGATTTCTTGCTATTT
GCCGCACTGTTAGGTTTTCTCTGCGACCAATAACATAGAGCGCTTGGAGA
GTAAACAGGGCGAAGCTGGCATTAGAACTCCGGGTGTCTCTAATCTAAAC
GAAAAATACTTGTAAGCTTGCAGGCTCCTCAGAGCTGGGTTATCCGTATC
ATAGGTTCGGCGATTAAAGAGACCCAAAACAATAGAAACTTGGAAAATAA
GTTCAACGGCTCGACGCAATATACAGATCATAGATTCAGGTAGACAGGTA
GGCAGGGAAGGAGTTGGGAGAAAGTAGAGCTTGTGAGGGTGTATATCAAC
GCATGTGTGGGCAGCTGTTGTTATCCTCAGTTTCGAAACTCTTCGTCCAA
TGCGTTCACTTAGCAGGACCAAACGGGTCGAGCATCTGTGTCGGAGCATT
TGAACCGATCTCACTTCCAGCCTGATCACGTCCATCAGTTCAACCAGTTG
CAGGTGAAAAAAAGCCTATCAATATTCGTTGTGCCAAAATATTGTTGGGT
TAATATTACGGTGAAGGGACGGTTGTCTAAATCACGATCATGGTGAAGGG
ACGGTTGCTTTTCCGACAGCCGATATGAGCACTTTACCGAGATGTCTCTT
TGAACGGTCGTTGTCACCAATGGACCAATGGAGATAACCTAGAAAGGAAA
AAACATTGTTTTCTGGCCGCGCGTGTTGAACGCCGGTTCGTCCTTCTTTT
TACCTCGAATTTTACGATCCCTCATATCTCGATGAACCCGGACCCAAGCG
CCAACCCTGACTTGACCAGCAAATCGCCTAGGTTCCTCTGCTGGGTAGGC
GATGCTATGATCTAACATATTATAGCCAGTCCCGGGACTGCCGTAATAAT
TTTCTAGAAACATCATTTAAGCCATCTGAACAAATGAATTCATATTTTGC
AAGAACCATCCTTGTACATAGTGCTAAGCTCTACTGTTGCCGATATACGT
GGCAGCTGAGAGCCGAGCCATGTTTGATTGATGATGCCTACAACCATAAA
CGTAAGAATCGTTATGAAATACTGCGTCGACTGCTTTTGGGTCACACGGT
TTGGTTGTTTTCTTGACAGATACAGCAGCCAGTGCATGTCTCGCAGCACC
GCGCTCCACACTCCCTGCACCAAACCCATCAGCAGCAGCAAGGGTATCAG
CAGGGCCAACAGCCGCAGCTACCGCCTGGTCCGCTCGGGGGTCAGGTAGC
TCACCCTAGGCAACAGCCGCAGCATCACCAAGATATGGGGCGGTCGAGCC
AGGCACAACATTTGCATATGCAGCGGCAGCAGCGGCACATATCTCGCCAG
TCCCCTGCCTTTATGATGTCTTCGCAGGGAATGAGTTATTCTGATCCGCG
GACTCCTCGAGGGGACGGTGGGCTCGGAGGATTACCGGTCCAAATGACAG
GAGCCTACCGCGACGGGCCCCAGCCGGGTAGCTACGGGTTTACCCCGCCG
GATCAGCATCGTAAACGATGAGGGAATATTTTGAGTGAATCGAAGCTGAG
ATAAACTGGAGTTAAATTGAAGATGCACGATGTGGGGACTGCGGCGAAAC
GCTTTGGCCCTCTGATCGTTTTGGTAATAACATGGAGCCAAGGCGGAAGC
AGGGTCTAATGTTTTGTACTGATAATCTTCTCCCATGATGTAGACGAAGA
ATAACCACTTGAAGCGTGATTAGTTGAAAATTCAACATTTCTCCTGCTTT
CTCGTTGAAGAGGGCAGTACGCTTTTAATGGGTTAATGGATGAAAGTGTG
AATGCTCTGAGGCGAAAAGGCAGTATAGTATAGTTGATTTTTAGCTACAA
CCCTTGTCGGCAGACGAAATATACCCGGTACTCTATGGAGCTATGGATCA
TTACGGACGCGAGCAGTAGGAGATGGATATTCTTTGCTTTCTATTTTAAT
AGTGATGTCTAATACAGTAGTGATGTCGAATGTCGAAACCCTGGGTAAGG
AAATTGCTGTAGTCAAAGAACGTCACCGACTGAGATATCCGTCGATATAA
TTTGCTCTCGTTTCAACTTTCATCGACAGCAACGAACAGGTCTGTAGTTA
CTGTAAATCGTTTCCAGATTTTCCTGGTGCTATACAGTAACGTGTTCTAC
TGCTACTTTGCGTAACCCCGGGACCGCTTGCGTTATGAGTGCGTTTGACT
TGTGCGTGGTCACGTGCTTTACTGCTTCGCGGGCTAAATAAATAAAAAAT
GACGAGAGTTGGTGTGGTTGTTCGGAGGGCTAGGGTGCTGTTCCAGGCCA
GAAAACCCTTGCCACCTTTTAGATTTTAGATTTTATTGCTGGCACGGCGC
CTCTAACGTATAACGTATCACGTATCTCGAAAGAACGAACAGTGTTCTTT
ACAGTTTGGCAATTTATACTACGGTCTGTATAATTTTATATTTAAGGTTA
AAGTATTAAAGTGTCCAATATTTTGTGGGTGGAGGGGCAATAGGAGACCT
GGCGATAGTTGGCCCCGTGGATTTCACTTCCCACGGTGCTCAGAAGCCGT
GGATGTTCGGAGGGTTCGAATGAGTTCAAGGTTTAAATATGTATTTTATA
GTACAGTAATGTAAACATCCGAACCTAACAATAGTTGCCGATGTTAGGAG
GGTTGGAATTAATTCATGGTTTGCCGAAGACTAACAACCCTAAATCCAAA
TCCAACCCTCCGAACATGAGTAATCACACGTGACGATTCTGTTATCAAAG
GTGAACCTGACGGTAGTTGTTTCCCTGGATTGCACCCTTTACGGTGCTAA
GAAGGTGTGGGTATTTGGAGGGTTGAAATTAGTTCAAGTATTTTTTAACC
CTTTTGAAACTGGATTTTAACTTTTGTATTGAATTTAGTGAAAAAAAAAC
AGTTCAAGTTCCATAAGGGTTAAGAAAATATTTCCAACCTC back to topCoding sequence (CDS) from alignment at H-elongata_contig10276:1217..7807- >mRNA_H-elongata_contig10276.239.1 ID=mRNA_H-elongata_contig10276.239.1|Name=mRNA_H-elongata_contig10276.239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6480bp|location=Sequence derived from alignment at H-elongata_contig10276:1217..7807- (Himanthalia elongata Himel1 dioecious)
ATGATGGTAGGGGCCAAGGATAATCTACCAGCGGGCTCGAGATCGGGGGT
GGTGGCACCTGTCCCAATCAACACCCCGAGCTTACGTCAAGAGATCCACG
GCACGAAGGATGACAATGCCGCAATGGGCTCAATCAATCGCTCAAACGCC
GGCACTGGTTGGGGCTCAGCTGCGGCTAATACATCGACTGCCACCGGGAA
CGCAACCGATTATGTATCTATGCGAAGCAGGGGCACGGGAGCAAATACAG
GCGGAGACGACGCGTTTACTCGACATTTCCCTGATCTCCGGACGGGTCTG
GAGCAAGCTGAAAGACTCGACGCCGCGACCAAGGCTTCTACCAAGGTTGC
TCCCTTGAGGAAGCAGAAGCCCGAATCAACCATCGACCAAGGTCCATCAC
TCCGACCGAGAGATGATGGTAGGGGCCAAGGATAATCTACCAGCGGGCTC
GAGATCGGGGGTGGTGGCACCTGTCCCAATCAACACCCCGAGCTTACGTC
AAGAGATCCACGGCACGAAGGATGACAATGCCGCAATGGGCTCAATCAAT
CGCTCAAACGCCGGCACTGGTTGGGGCTCAGCTGCGGCTAATACATCGAC
TGCCACCGGGAACGCAACCGATTATGTATCTATGCGAAGCAGGGGCACGG
GAGCAAATACAGGCGGAGACGACGCGTTTACTCGACATTTCCCTGATCTC
CGGACGGGTCTGGAGCAAGCTGAAAGACTCGACGCCGCGACCAAGGCTTC
TACCAAGGTTGCTCCCTTGAGGAAGCAGAAGCCCGAATCAACCATCGACC
AAGGTCCATCACTCCGACCGAGAGCTATGCTCAAACCCACTGGAAGTGCA
GGAGGAGGGAGCGTTGCAACAGCTGCAGCCCAGGCCGCGATAGCGGAAGC
CGTTCATAACCGCGCTGCCTCGACCCCGAAGACTGAAGAGTTCCGCCGGA
AGTCCCCAAGTTTTGCCGAAGAGATTTCAGGGAGCAGATCACGATGGACA
GAGCGCACACCTTTGAAAGAGGGCGGGGTTAAAGGGCGTGTTGGAGGGGG
GCGAGGCGCTGCGGGAGACCGAGGTAGCGGGGGCTCTTGGGAATCAAGTG
GTACGTATCGGGAAAGAGGTGGTGGAAGGAGTGCGAATGCAGTGCACGAC
CGAGACCGAAAAGTCCCTCGAGATTCTTACCAGGACAAAGATTTCGGGAA
AAACTTCCGTCAAGCACCCGAGAGAATTGCTGGAGGTAACACCAGAACCA
GAGAGTCTAGCTTTGGCTCAAGAGCGCACGGGACAGCGAATTCTGACCAA
GATGGCCAAAGTGCGAACGTCAAGCCCTTGACTACTACGTACGTCCGTCA
ACACGGTCCTCCTCCACGCAGAGCGGCTCAGGCTGGAGTAGGTGCGTCCC
AATCGCCAACTCGGCAGGAACATCAGCCACCACCCACAAAGCAACCCACG
AGGAGTTCGGCGTATTCAGCGTCAACACGGCCGGAGCTTCCCTCAGAAAC
TTTTGAACCTTTGCGTGCACCGTCAGAGACGTCTTCGAAGTGGCGCTCTT
TCTCGTCTCCAAGTGCCCAGCCTATTGAGTCACCAGAATCGACTGCCATC
GAATGTTCACTTTCCCAGTCTACGCTACTAGTACACGGAGCTGGAAGTAA
AGGACGGATTGGCGAGCAGGACGAGCTAGAAACGCGTGCTCAACTTCACG
ACGCTAGGGAAGAAGATACGTGTCGTTTTGAGTGCTCGTGGGGGGGGTCC
GAACAAGGTCGTGCTGCGGTAGATGGAGATTATTCAGGAAGTGGAGATGT
AGAGAGGACGCTAAACGAGAGGTGGAAGGAATACACTCCCGGTTCACTAT
CCCCCCGATCAGCTCCTACAAGTACCCGATGGAAGGAGACTAATGATGAG
TTACGGGCGTCAAGGAGATGGAATTGCAAAGAGGAGAGTCATGTCGACGG
CGGTAAACGGGATAAATCTACAGAAGACGATGATGTAGGTAGCAGTTGCG
TCGTCACACCGGCCATGGCGTCGTCCACCCAATCGCAGAGCAGCTCGTGG
AGAGGGACCGCCGACGACGGTTGGGGTGCGGACGCGGTTGAGCAGGATGG
CGATGCTGGAATGCTGACCGTATCAACGACGGAAGGCGTAGAACAGCAAG
ATGTGGTTAGCGAGACGACTGTTTCTGCCGAGACTATTATGCCCCTGCAC
AAAGTGGAAACCATCGCCGGACCTGCGACGCTGGCTAAGGCCGATGACTC
CAACGAGGACCATGCATCCGTTCAAGGCCCCTTGGTGGCACAACAGCAGG
TACAGCAAGTGGCCGAGGCTACGCAACCCGCGGTGCGCACAACGTCGTGG
GAGCCGCAACTTTCTGTTGGAACCGAACTTTGGGAGCCCGCAAGCCATGG
CAGCGACAGTCTACCGAGCAGCTCTCAAGGACCAGGTCAAATGGGATCGT
CGGGCTCAGGTAGTGCGTCTCAGCCGTGGCGCGACCCCTGGGGTACGTCT
GGGTTCGGTTTGCCGTCTGGCGGCGACTTTCTCGGCAACGGGCCTAGTGA
AACTCAAAAGGGCCGCTACTTGCCTCCCGCTCTACGGAACAGAACTCCTG
GTGAAAGGAACCACGTCGAGCATGACACAGAAACAATTTCCCCTGCAATG
CCCCAAGATGTTTCGACAGCCCAAGATGGGTCGACGGCCGACGTTTCCAC
TCAAGACCTCGTGGTGATACAGGGAATTCCTTCAAGTGGCACGGCTGTGG
GTAGTACCCATATGTTTGAGCAACATCAACAAACACAGCAGCAGCCACAG
CAACAAGCACAGCAGCAGCAGTCACAGCAGCATCATCAACCACAACAGCA
GGTGCAACAGCAGCACCAATCCTTGGAGGAGTGGCAGCATGCGACATCTC
ATCGGGTCGAAGAACGCACAGAAAGTCCGGGGGATCGGGCCTTACATCGG
AGCCAGGCCATGCAACAGTCGCAACAGCTATGCTCAAACCCACTGGAAGT
GCAGGAGGAGGGAGCGTTGCAACAGCTGCAGCCCAGGCCGCGATAGCGGA
AGCCGTTCATAACCGCGCTGCCTCGACCCCGAAGACTGAAGAGTTCCGCC
GGAAGTCCCCAAGTTTTGCCGAAGAGATTTCAGGGAGCAGATCACGATGG
ACAGAGCGCACACCTTTGAAAGAGGGCGGGGTTAAAGGGCGTGTTGGAGG
GGGGCGAGGCGCTGCGGGAGACCGAGGTAGCGGGGGCTCTTGGGAATCAA
GTGGTACGTATCGGGAAAGAGGTGGTGGAAGGAGTGCGAATGCAGTGCAC
GACCGAGACCGAAAAGTCCCTCGAGATTCTTACCAGGACAAAGATTTCGG
GAAAAACTTCCGTCAAGCACCCGAGAGAATTGCTGGAGGTAACACCAGAA
CCAGAGAGTCTAGCTTTGGCTCAAGAGCGCACGGGACAGCGAATTCTGAC
CAAGATGGCCAAAGTGCGAACGTCAAGCCCTTGACTACTACGTACGTCCG
TCAACACGGTCCTCCTCCACGCAGAGCGGCTCAGGCTGGAGTAGGTGCGT
CCCAATCGCCAACTCGGCAGGAACATCAGCCACCACCCACAAAGCAACCC
ACGAGGAGTTCGGCGTATTCAGCGTCAACACGGCCGGAGCTTCCCTCAGA
AACTTTTGAACCTTTGCGTGCACCGTCAGAGACGTCTTCGAAGTGGCGCT
CTTTCTCGTCTCCAAGTGCCCAGCCTATTGAGTCACCAGAATCGACTGCC
ATCGAATGTTCACTTTCCCAGTCTACGCTACTAGTACACGGAGCTGGAAG
TAAAGGACGGATTGGCGAGCAGGACGAGCTAGAAACGCGTGCTCAACTTC
ACGACGCTAGGGAAGAAGATACGTGTCGTTTTGAGTGCTCGTGGGGGGGG
TCCGAACAAGGTCGTGCTGCGGTAGATGGAGATTATTCAGGAAGTGGAGA
TGTAGAGAGGACGCTAAACGAGAGGTGGAAGGAATACACTCCCGGTTCAC
TATCCCCCCGATCAGCTCCTACAAGTACCCGATGGAAGGAGACTAATGAT
GAGTTACGGGCGTCAAGGAGATGGAATTGCAAAGAGGAGAGTCATGTCGA
CGGCGGTAAACGGGATAAATCTACAGAAGACGATGATGTAGGTAGCAGTT
GCGTCGTCACACCGGCCATGGCGTCGTCCACCCAATCGCAGAGCAGCTCG
TGGAGAGGGACCGCCGACGACGGTTGGGGTGCGGACGCGGTTGAGCAGGA
TGGCGATGCTGGAATGCTGACCGTATCAACGACGGAAGGCGTAGAACAGC
AAGATGTGGTTAGCGAGACGACTGTTTCTGCCGAGACTATTATGCCCCTG
CACAAAGTGGAAACCATCGCCGGACCTGCGACGCTGGCTAAGGCCGATGA
CTCCAACGAGGACCATGCATCCGTTCAAGGCCCCTTGGTGGCACAACAGC
AGGTACAGCAAGTGGCCGAGGCTACGCAACCCGCGGTGCGCACAACGTCG
TGGGAGCCGCAACTTTCTGTTGGAACCGAACTTTGGGAGCCCGCAAGCCA
TGGCAGCGACAGTCTACCGAGCAGCTCTCAAGGACCAGGTCAAATGGGAT
CGTCGGGCTCAGGTAGTGCGTCTCAGCCGTGGCGCGACCCCTGGGGTACG
TCTGGGTTCGGTTTGCCGTCTGGCGGCGACTTTCTCGGCAACGGGCCTAG
TGAAACTCAAAAGGGCCGCTACTTGCCTCCCGCTCTACGGAACAGAACTC
CTGGTGAAAGGAACCACGTCGAGCATGACACAGAAACAATTTCCCCTGCA
ATGCCCCAAGATGTTTCGACAGCCCAAGATGGGTCGACGGCCGACGTTTC
CACTCAAGACCTCGTGGTGATACAGGGAATTCCTTCAAGTGGCACGGCTG
TGGGTAGTACCCATATGTTTGAGCAACATCAACAAACACAGCAGCAGCCA
CAGCAACAAGCACAGCAGCAGCAGTCACAGCAGCATCATCAACCACAACA
GCAGGTGCAACAGCAGCACCAATCCTTGGAGGAGTGGCAGCATGCGACAT
CTCATCGGGTCGAAGAACGCACAGAAAGTCCGGGGGATCGGGCCTTACAT
CGGAGCCAGGCCATGCAACAGTCGCAACAGGTCCAGCGCGCGCAACCCCT
GCACCTTGGTGACCAGCCTCATATCGATCGCAATTACCGGCCAAGTCCTT
CAACGGCGTTCTCCTTCCAGAATCCGGTCCAGCGCGCGCAACCCCTGCAC
CTTGGTGACCAGCCTCATATCGATCGCAATTACCGGCCAAGTCCTTCAAC
GGCGTTCTCCTTCCAGAATCCGGACCGGCACCAACATCCGATACAAGAAT
CACCGCTGCATCACCAGTTCCAGGCCGAACACTATCATGCTCAGTCTTAC
CATAGCCAGGACCGGCACCAACATCCGATACAAGAATCACCGCTGCATCA
CCAGTTCCAGGCCGAACACTATCATGCTCAGTCTTACCATAGCCAGCAGG
ACCAAACGGGTCGAGCATCTGTGTCGGAGCATTTGAACCGATCTCACTTC
CAGCCTGATCACGTCCATCAGTTCAACCAGTTGCAGCAGGACCAAACGGG
TCGAGCATCTGTGTCGGAGCATTTGAACCGATCTCACTTCCAGCCTGATC
ACGTCCATCAGTTCAACCAGTTGCAGATACAGCAGCCAGTGCATGTCTCG
CAGCACCGCGCTCCACACTCCCTGCACCAAACCCATCAGCAGCAGCAAGG
GTATCAGCAGGGCCAACAGCCGCAGCTACCGCCTGGTCCGCTCGGGGGTC
AGGTAGCTCACCCTAGGCAACAGCCGCAGCATCACCAAGATATGGGGCGG
TCGAGCCAGGCACAACATTTGCATATGCAGCGGCAGCAGCGGCACATATC
TCGCCAGTCCCCTGCCTTTATGATGTCTTCGCAGGGAATGAGTTATTCTG
ATCCGCGGACTCCTCGAGGGGACGGTGGGCTCGGAGGATTACCGGTCCAA
ATGACAGGAGCCTACCGCGACGGGCCCCAGCCGGGTAGCTACGGGTTTAC
CCCGCCGGATCAGCATCGTAAACGATGAATACAGCAGCCAGTGCATGTCT
CGCAGCACCGCGCTCCACACTCCCTGCACCAAACCCATCAGCAGCAGCAA
GGGTATCAGCAGGGCCAACAGCCGCAGCTACCGCCTGGTCCGCTCGGGGG
TCAGGTAGCTCACCCTAGGCAACAGCCGCAGCATCACCAAGATATGGGGC
GGTCGAGCCAGGCACAACATTTGCATATGCAGCGGCAGCAGCGGCACATA
TCTCGCCAGTCCCCTGCCTTTATGATGTCTTCGCAGGGAATGAGTTATTC
TGATCCGCGGACTCCTCGAGGGGACGGTGGGCTCGGAGGATTACCGGTCC
AAATGACAGGAGCCTACCGCGACGGGCCCCAGCCGGGTAGCTACGGGTTT
ACCCCGCCGGATCAGCATCGTAAACGATGA back to top
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