mRNA_H-elongata_contig102721.234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102721.234.1
Unique NamemRNA_H-elongata_contig102721.234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 7.330e-119
Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEA---SFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612
            QVSTEAIDATVNLDG KRSNYDPDEM+EEQRER +RKR NNAFKDFA+KVT+AA  DGQ LEFDIPFDQLGF GKPFKEA   + M FIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFS+SKTCD+KIIMKENMLENGGEP+ IDMIDQNKYLNK+M WLEECEITYTQTAKPWNWK MM DIRGDNRFYLD+Y+DGE+KPAGW
Sbjct:  735 QVSTEAIDATVNLDGVKRSNYDPDEMMEEQRERGMRKRRNNAFKDFASKVTKAASRDGQSLEFDIPFDQLGFGGKPFKEARTNTLMGFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSSSKTCDMKIIMKENMLENGGEPKTIDMIDQNKYLNKIMQWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYEDGERKPAGW 941          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.140e-70
Identity = 125/211 (59.24%), Postives = 158/211 (74.88%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENG--GEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDS-----YDDGEKKPAGW 612
            QV TEA+D+TVNLD A+RS+YDPDE++EEQ++++LRKRLN AFKDFAAKV++ A  + Q LEFDIP+ +LGFQG P KE   MVFIQPTTYAL+NVTD P FVV  ++IEHVHFERV    +  DLKII + N+  +    EP  I+MI+Q K+LN++M WL +  ITYTQT K WNWK ++  +R D RFYLD+      +DG KKPAGW
Sbjct:  547 QVYTEAVDSTVNLDNARRSHYDPDEIMEEQQDKKLRKRLNQAFKDFAAKVSKVAARNQQTLEFDIPYKELGFQGTPHKE---MVFIQPTTYALLNVTDQPAFVVLTDDIEHVHFERVNPNGRNFDLKIITRANVAADQPPSEPLSINMIEQ-KFLNQIMGWLVDSSITYTQTDKTWNWKAVLNLVREDERFYLDTGKSTEQEDGTKKPAGW 753          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S3XXU1_HETAK (FACT complex subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXU1_HETAK)

HSP 1 Score: 193 bits (491), Expect = 1.870e-53
Identity = 102/206 (49.51%), Postives = 142/206 (68.93%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGD-NRFYLDSYDD-GEKKPAGW 612
            Q  TEA++A+VNLD A++S YDPDEMVEEQRER+L KRL+  FKDF  K+ + A A GQ L+F++P+  LG+ G P +E   MV++QPT   L+NV D PFFVV LN++EHVHFERV  ++K  D+ I+MK+  LE   +P+ IDMI+ +KYL+++  WL +   TYT       WK ++  ++ + + FYLD  +  GE KPAGW
Sbjct:  765 QFYTEAMEASVNLDAARKSAYDPDEMVEEQRERELAKRLDATFKDFTRKIEKVAGAHGQKLKFEVPYHDLGWHGTPHRE---MVYVQPTVSCLVNVVDTPFFVVDLNQVEHVHFERVMFSAKNFDMVIVMKD--LEE--QPKRIDMIE-SKYLDRIQDWLTDMGFTYTSGPANLQWKAILQTVKEEGHHFYLDRDEGTGEAKPAGW 962          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: K0SMK5_THAOC (FACT complex subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMK5_THAOC)

HSP 1 Score: 184 bits (466), Expect = 2.360e-53
Identity = 102/205 (49.76%), Postives = 132/205 (64.39%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612
            Q  TE +DA+  +DG +RS YDPDEM +EQRERQLRKRLN AFKDF  KV   AR +G  LEFDIP+  LGF G P KE   MV I PT   L N+T+ PFFVV L+ ++HVHFERV   SK  D+ +I K+   +    P  +DMI  N+  + +  WL + EI+YT+     NWK +M  + GD+RFY+D+ +D   +K AGW
Sbjct:   84 QFFTEVVDASQAVDGNRRSMYDPDEMDDEQRERQLRKRLNEAFKDFCRKVENVARKNGYTLEFDIPYRDLGFMGNPNKE---MVMIMPTLNCLCNLTETPFFVVDLSNVDHVHFERVTFMSKAFDMVLINKDFTKQ----PWRVDMIP-NEEKDSIQEWLTDMEISYTEGPMNLNWKSIMSTVVGDDRFYMDTEEDEVTQKEAGW 280          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S4VDK5_9STRA (FACT complex subunit n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VDK5_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.700e-53
Identity = 100/205 (48.78%), Postives = 133/205 (64.88%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612
            Q  TE IDA+  +D  +RS YDPDEM +EQRERQLR++LN AFK+F  KV   A+ +G  LEFDIP+  LGF G P KE   MVFIQPT   L+N+T+ PFFVV L++++HVHFERV   SK  D+ +I K+       +P  +DMI  N     +  WL + E++YT+     NWK +M  + GD+RFY+D+ +D   KK AGW
Sbjct:  135 QFFTEVIDASQTVDAGRRSMYDPDEMDDEQRERQLRRKLNEAFKEFCRKVENVAKKNGFSLEFDIPYRDLGFNGNPHKE---MVFIQPTLNCLVNLTETPFFVVNLSDVDHVHFERVTFMSKAFDIVLINKDF----SKQPWRVDMIP-NDDKESIQEWLTDMELSYTEGPMNLNWKQIMGTVAGDDRFYMDTEEDEVTKKEAGW 331          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S1CWN1_CYCTE (FACT complex subunit (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWN1_CYCTE)

HSP 1 Score: 179 bits (453), Expect = 4.550e-52
Identity = 97/205 (47.32%), Postives = 130/205 (63.41%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612
            Q  TE +DA+  +D  +RS YDPDEM +E RER LRK+LN AFK+F  KV   A+ +   LEFDIP+  LGF G P KE   MVF+QPT   L+N+T+ PFFVV L +++HVHFER+   SK  D+ +I K+       +P  IDMID N   + +  WL + EITYTQ     NWK +M  +  D+RFY+++ +D   +K AGW
Sbjct:   11 QFLTEVVDASQTVDAGRRSMYDPDEMDDENRERMLRKKLNQAFKEFCKKVEAVAKKNNFSLEFDIPYRDLGFMGNPHKE---MVFVQPTLNCLVNITETPFFVVDLADVDHVHFERITYMSKAFDVVLINKDF----SKQPWRIDMID-NSDKDAIQEWLTDMEITYTQGPMNLNWKSIMNTVGSDDRFYMNTEEDEVTEKEAGW 207          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: F0YPC0_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPC0_AURAN)

HSP 1 Score: 179 bits (455), Expect = 7.700e-52
Identity = 94/204 (46.08%), Postives = 130/204 (63.73%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612
            Q STE +DA+V LD A+RS YDPDE+ EEQRER LRK+LN  FK+F  K+ R A+     LEFDIP+  L F G P +E   MV IQPT + L+N+T+ PFF+V L+ +EHVHFER    +   D+ II+K   L     P  ++ +   + L+ +  WL +C +TYT      +WK +M  +R D+RFY ++ ++GE KPAGW
Sbjct:   86 QFSTEVVDASVALDSARRSMYDPDELDEEQRERHLRKKLNEMFKEFCKKMERVAKQHHYDLEFDIPYRDLSFHGVPNRE---MVLIQPTVHCLVNLTETPFFIVELDHVEHVHFERCTLRATNFDMVIILKNFELA----PLSVNAVPVQE-LDAIQEWLTDCSLTYTAGQASMSWKSVMNLVRSDDRFYEETDENGEPKPAGW 281          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S0AWW6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AWW6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.040e-51
Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612
            Q  TE +DA+  +D  +RS YDPDEM +EQRERQLRK+LN AFK+F  KV   AR +   +EFDIP+  LGFQG P KE   MVFI PT   L+N+T+ PFFVV L++++HVHFERV   SK  D+ ++ K+       +P  +DMI  N   + +  WL + EI+YT+     NWK +M  +  D+RFY+++ +D   +K AGW
Sbjct:   32 QFFTEVVDASQTVDMGRRSMYDPDEMDDEQRERQLRKKLNEAFKEFCRKVENTARKNDYTVEFDIPYRDLGFQGNPNKE---MVFIMPTLNCLVNLTETPFFVVDLSDVDHVHFERVTFASKAFDMVLVNKDF----NKQPARVDMIP-NGDKDAIQEWLTDMEISYTEGPMNLNWKQIMQTVAADDRFYMNTEEDEVTEKEAGW 228          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A6A5B037_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B037_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.570e-51
Identity = 92/204 (45.10%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612
            Q  TE I+++  LD  +RS YDPDE+ EE RER LR++LN  FKDF  KV R +    + + FDIP+ +LGF G PFKE   MV +QPT + L+++T+FPFF+  L+++EHVHFERVF  SK  D+  + K   L     P  +  I  N+ L ++  WL++  I +T+     NWK +M+ I+ D+RFYL++ +DG  KPAGW
Sbjct:  158 QFYTEVIESSQALDNRRRSMYDPDELDEENRERSLREKLNLTFKDFCQKVERVSEQIDKTIAFDIPYRELGFSGTPFKE---MVLLQPTVHCLVSLTEFPFFITLLDDVEHVHFERVFFGSKNFDMVFVYKNFNLV----PVRVSAISTNE-LERIKEWLDDINICFTEGTANLNWKQIMVTIKADDRFYLETDEDGVPKPAGW 353          
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.630e-51
Identity = 99/205 (48.29%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612
            QV TE +DA++ +D  +RS YDPDEM +EQRERQLRK+LN AFK+F  KV   A+ +G  LEFDIP+  LGF G P  +   MVF+QPT   L+NVTD PFFV  L+E++HVHFERV   SKT D+ +I K+       +P  +DMI  N   + +  WL + E++YT+     NWK +M+   GD+RFY+++ +D   +K AGW
Sbjct:  456 QVFTEVVDASLQVDAGRRSMYDPDEMDDEQRERQLRKKLNQAFKEFCRKVESTAKKNGYSLEFDIPYRDLGFNGTPHNQ---MVFVQPTLNCLVNVTDTPFFVTDLSEVDHVHFERVTFMSKTFDVVLINKDF----SKQPWRVDMIP-NSDKDAIQDWLTDMELSYTEGPMNLNWKQIMLTCAGDDRFYMNTEEDEITQKEAGW 652          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI7.330e-11986.47FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA2.140e-7059.24FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3XXU1_HETAK1.870e-5349.51FACT complex subunit n=1 Tax=Heterosigma akashiwo ... [more]
K0SMK5_THAOC2.360e-5349.76FACT complex subunit n=1 Tax=Thalassiosira oceanic... [more]
A0A7S4VDK5_9STRA7.700e-5348.78FACT complex subunit n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1CWN1_CYCTE4.550e-5247.32FACT complex subunit (Fragment) n=1 Tax=Cyclophora... [more]
F0YPC0_AURAN7.700e-5246.08FACT complex subunit n=1 Tax=Aureococcus anophagef... [more]
A0A7S0AWW6_9STRA1.040e-5146.83FACT complex subunit (Fragment) n=1 Tax=Minutocell... [more]
A0A6A5B037_9STRA1.570e-5145.10FACT complex subunit (Fragment) n=1 Tax=Aphanomyce... [more]
A0A7S0GEE7_9STRA1.630e-5148.29FACT complex subunit n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102721contigH-elongata_contig102721:414..2252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.3
Seed ortholog evalue2.9e-100
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size615
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102721.234.1prot_H-elongata_contig102721.234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102721 414..2252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.3584297-CDS-H-elongata_contig102721:413..5601622929564.3584297-CDS-H-elongata_contig102721:413..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 414..560 +
1691679072.2422915-CDS-H-elongata_contig102721:413..5601691679072.2422915-CDS-H-elongata_contig102721:413..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 414..560 +
1622929564.3710377-CDS-H-elongata_contig102721:1197..12961622929564.3710377-CDS-H-elongata_contig102721:1197..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 1198..1296 +
1691679072.2546024-CDS-H-elongata_contig102721:1197..12961691679072.2546024-CDS-H-elongata_contig102721:1197..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 1198..1296 +
1622929564.3830805-CDS-H-elongata_contig102721:1522..16691622929564.3830805-CDS-H-elongata_contig102721:1522..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 1523..1669 +
1691679072.269305-CDS-H-elongata_contig102721:1522..16691691679072.269305-CDS-H-elongata_contig102721:1522..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 1523..1669 +
1622929564.3945487-CDS-H-elongata_contig102721:2030..22521622929564.3945487-CDS-H-elongata_contig102721:2030..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 2031..2252 +
1691679072.2772818-CDS-H-elongata_contig102721:2030..22521691679072.2772818-CDS-H-elongata_contig102721:2030..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102721 2031..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102721.234.1

>prot_H-elongata_contig102721.234.1 ID=prot_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKV
TRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFP
FFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQN
KYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKK
PAGW*
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mRNA from alignment at H-elongata_contig102721:414..2252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102721.234.1 ID=mRNA_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-elongata_contig102721:414..2252+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCTACCGAGGCGATCGATGCCACGGTAAACTTGGACGGCGCCAA ACGGTCGAACTATGACCCGGACGAGATGGTAGAGGAGCAGCGCGAGCGAC AGCTGAGGAAGCGCCTCAATAACGCCTTCAAGGACTTCGCTGCCAAGGTA ATTTTTCAACGTTTTGTGGGGGAAGGAGGGGGTTATTCAGGTCTACACCC CCCCCCCCCGCGGGATACGCCTCTTTTTGTTGAAGCACTATTAATAGGGC GATGGGGAAAGGTCCATGCAAAGAAAAGCGCACACTGCACATTTTTTTGT TCGCTTAACTGATTATTTTTTGCGTCGTCTGAACATCTGCCGTTCTCTTG CAACTTCCCCACTACATTGCTTGGTTTTGTTATAGCGCTACTGTGAAGCG GTCGAACACTATATTTTATTTAAACCTTCATTGATATGCATAAATTGCGT GTTTATTGGAACACCTACCACATTTTTGCAATCATCGCTTGATGTGATAA ATATCGTCTGTGTTAGTCCATGTGGCGAATTAAGTGGTTTCTGGTTTATC TCTCGCTTTTGTACGATGTTAATTGGATATTTTGGCTTTTTTTATTAAGG ATTGATCCCTAGACGACTCAATCACATGACAGTAGTATTAGGGATCAAGT CTTAATAAACAAACAAACTGGACGCGGCTTCAAATACGGGAAAAAAAATG AATATTCGTGTAGTTTAGGGGTCAAGCCTTAAGAAACGAACAAAAGAGTC TTTTTATGAATAAAAACTGGACGCTTTCTGTCAGGTTACAAGGGCTGCTA GAGCCGACGGGCAGCATCTGGAGTTCGACATCCCGTTCGACCAGCTGGGT TTCCAGGGCAAGCCGTTCAAGGAGGCAAGTTTTGTGGCATTCACTCTCTA ACGCGCATTTCCTTGCCTTGCTCAAAAAGGTTTGATACTCCTCGCAGCCT AAAATCTTAGTTTGATACTCCTCGCCTTAGCCCTGCCCTGCCTGCCCCCT GTCCCCCTGAATCTATCGCCATCCCCCGTGTGATGGGATGGGATCGTTCT TGATCCTTGGACTGAATCCTTGTTGCGACCTTCCTGGGCGTGGTTGTTTT TGCCGACAGATGGTGTTCATCCAGCCAACGACGTACGCCCTTATCAATGT GACGGACTTCCCGTTCTTCGTGGTGCCCTTGAATGAAATCGAGCACGTGC ACTTCGAGCGTGTCTTCTCCACCTCCAAGACGTGCGACCTCAAGATCATC ATGAAGGTGATGCTCTTTCTGTTAGCCGCGAATTCGAAAGGTTCCCCGAC ATAAGCCGACCCGACCCTAACGATACGCCAGCACAAACGGCTGCGGCGCA GGTCGAACGCGGCGGGATTTGGTAAGGGTTGTCTAGGGAATATACTACAT CAACCGAGTCCCTCTGTTGCCGCAGTCTTGTTGAATGTACAGTATGTGTT TTTTGTTTGTTTTTGTGTGAGTGTGTCCATTTTCTGGCGGTGTTTATTTT ATATCAAATTAAATAATATATGTCAAATGCCTTGCTTTTATCGATTTCTC TGGCTTGCCACCCGTTAAAAAAACTTAGCCCTTTTTATCGATATAATTTA CAAAACTGGCCGGATAGGAGAACATGTTGGAGAACGGAGGTGAGCCTCGG ATGATCGACATGATCGACCAGAACAAGTACCTGAACAAGGTCATGTCGTG GCTCGAGGAGTGCGAGATCACCTACACCCAGACAGCCAAGCCGTGGAACT GGAAGCTGATGATGATGGACATCAGGGGAGACAATCGCTTTTACCTGGAC AGCTACGACGACGGAGAGAAAAAGCCCGCGGGATGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102721:414..2252+

>mRNA_H-elongata_contig102721.234.1 ID=mRNA_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig102721:414..2252+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCTACCGAGGCGATCGATGCCACGGTAAACTTGGACGGCGCCAA
ACGGTCGAACTATGACCCGGACGAGATGGTAGAGGAGCAGCGCGAGCGAC
AGCTGAGGAAGCGCCTCAATAACGCCTTCAAGGACTTCGCTGCCAAGCAG
GTTTCTACCGAGGCGATCGATGCCACGGTAAACTTGGACGGCGCCAAACG
GTCGAACTATGACCCGGACGAGATGGTAGAGGAGCAGCGCGAGCGACAGC
TGAGGAAGCGCCTCAATAACGCCTTCAAGGACTTCGCTGCCAAGGTTACA
AGGGCTGCTAGAGCCGACGGGCAGCATCTGGAGTTCGACATCCCGTTCGA
CCAGCTGGGTTTCCAGGGCAAGCCGTTCAAGGAGGCAAGTTTTGTTACAA
GGGCTGCTAGAGCCGACGGGCAGCATCTGGAGTTCGACATCCCGTTCGAC
CAGCTGGGTTTCCAGGGCAAGCCGTTCAAGGAGGCAAGTTTTATGGTGTT
CATCCAGCCAACGACGTACGCCCTTATCAATGTGACGGACTTCCCGTTCT
TCGTGGTGCCCTTGAATGAAATCGAGCACGTGCACTTCGAGCGTGTCTTC
TCCACCTCCAAGACGTGCGACCTCAAGATCATCATGAAGATGGTGTTCAT
CCAGCCAACGACGTACGCCCTTATCAATGTGACGGACTTCCCGTTCTTCG
TGGTGCCCTTGAATGAAATCGAGCACGTGCACTTCGAGCGTGTCTTCTCC
ACCTCCAAGACGTGCGACCTCAAGATCATCATGAAGGAGAACATGTTGGA
GAACGGAGGTGAGCCTCGGATGATCGACATGATCGACCAGAACAAGTACC
TGAACAAGGTCATGTCGTGGCTCGAGGAGTGCGAGATCACCTACACCCAG
ACAGCCAAGCCGTGGAACTGGAAGCTGATGATGATGGACATCAGGGGAGA
CAATCGCTTTTACCTGGACAGCTACGACGACGGAGAGAAAAAGCCCGCGG
GATGGTAAGAGAACATGTTGGAGAACGGAGGTGAGCCTCGGATGATCGAC
ATGATCGACCAGAACAAGTACCTGAACAAGGTCATGTCGTGGCTCGAGGA
GTGCGAGATCACCTACACCCAGACAGCCAAGCCGTGGAACTGGAAGCTGA
TGATGATGGACATCAGGGGAGACAATCGCTTTTACCTGGACAGCTACGAC
GACGGAGAGAAAAAGCCCGCGGGATGGTAA
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