mRNA_H-elongata_contig102721.234.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 370 bits (950), Expect = 7.330e-119 Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEA---SFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612 QVSTEAIDATVNLDG KRSNYDPDEM+EEQRER +RKR NNAFKDFA+KVT+AA DGQ LEFDIPFDQLGF GKPFKEA + M FIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFS+SKTCD+KIIMKENMLENGGEP+ IDMIDQNKYLNK+M WLEECEITYTQTAKPWNWK MM DIRGDNRFYLD+Y+DGE+KPAGW Sbjct: 735 QVSTEAIDATVNLDGVKRSNYDPDEMMEEQRERGMRKRRNNAFKDFASKVTKAASRDGQSLEFDIPFDQLGFGGKPFKEARTNTLMGFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSSSKTCDMKIIMKENMLENGGEPKTIDMIDQNKYLNKIMQWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYEDGERKPAGW 941
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.140e-70 Identity = 125/211 (59.24%), Postives = 158/211 (74.88%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENG--GEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDS-----YDDGEKKPAGW 612 QV TEA+D+TVNLD A+RS+YDPDE++EEQ++++LRKRLN AFKDFAAKV++ A + Q LEFDIP+ +LGFQG P KE MVFIQPTTYAL+NVTD P FVV ++IEHVHFERV + DLKII + N+ + EP I+MI+Q K+LN++M WL + ITYTQT K WNWK ++ +R D RFYLD+ +DG KKPAGW Sbjct: 547 QVYTEAVDSTVNLDNARRSHYDPDEIMEEQQDKKLRKRLNQAFKDFAAKVSKVAARNQQTLEFDIPYKELGFQGTPHKE---MVFIQPTTYALLNVTDQPAFVVLTDDIEHVHFERVNPNGRNFDLKIITRANVAADQPPSEPLSINMIEQ-KFLNQIMGWLVDSSITYTQTDKTWNWKAVLNLVREDERFYLDTGKSTEQEDGTKKPAGW 753
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S3XXU1_HETAK (FACT complex subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXU1_HETAK) HSP 1 Score: 193 bits (491), Expect = 1.870e-53 Identity = 102/206 (49.51%), Postives = 142/206 (68.93%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGD-NRFYLDSYDD-GEKKPAGW 612 Q TEA++A+VNLD A++S YDPDEMVEEQRER+L KRL+ FKDF K+ + A A GQ L+F++P+ LG+ G P +E MV++QPT L+NV D PFFVV LN++EHVHFERV ++K D+ I+MK+ LE +P+ IDMI+ +KYL+++ WL + TYT WK ++ ++ + + FYLD + GE KPAGW Sbjct: 765 QFYTEAMEASVNLDAARKSAYDPDEMVEEQRERELAKRLDATFKDFTRKIEKVAGAHGQKLKFEVPYHDLGWHGTPHRE---MVYVQPTVSCLVNVVDTPFFVVDLNQVEHVHFERVMFSAKNFDMVIVMKD--LEE--QPKRIDMIE-SKYLDRIQDWLTDMGFTYTSGPANLQWKAILQTVKEEGHHFYLDRDEGTGEAKPAGW 962
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: K0SMK5_THAOC (FACT complex subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMK5_THAOC) HSP 1 Score: 184 bits (466), Expect = 2.360e-53 Identity = 102/205 (49.76%), Postives = 132/205 (64.39%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612 Q TE +DA+ +DG +RS YDPDEM +EQRERQLRKRLN AFKDF KV AR +G LEFDIP+ LGF G P KE MV I PT L N+T+ PFFVV L+ ++HVHFERV SK D+ +I K+ + P +DMI N+ + + WL + EI+YT+ NWK +M + GD+RFY+D+ +D +K AGW Sbjct: 84 QFFTEVVDASQAVDGNRRSMYDPDEMDDEQRERQLRKRLNEAFKDFCRKVENVARKNGYTLEFDIPYRDLGFMGNPNKE---MVMIMPTLNCLCNLTETPFFVVDLSNVDHVHFERVTFMSKAFDMVLINKDFTKQ----PWRVDMIP-NEEKDSIQEWLTDMEISYTEGPMNLNWKSIMSTVVGDDRFYMDTEEDEVTQKEAGW 280
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S4VDK5_9STRA (FACT complex subunit n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VDK5_9STRA) HSP 1 Score: 184 bits (468), Expect = 7.700e-53 Identity = 100/205 (48.78%), Postives = 133/205 (64.88%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612 Q TE IDA+ +D +RS YDPDEM +EQRERQLR++LN AFK+F KV A+ +G LEFDIP+ LGF G P KE MVFIQPT L+N+T+ PFFVV L++++HVHFERV SK D+ +I K+ +P +DMI N + WL + E++YT+ NWK +M + GD+RFY+D+ +D KK AGW Sbjct: 135 QFFTEVIDASQTVDAGRRSMYDPDEMDDEQRERQLRRKLNEAFKEFCRKVENVAKKNGFSLEFDIPYRDLGFNGNPHKE---MVFIQPTLNCLVNLTETPFFVVNLSDVDHVHFERVTFMSKAFDIVLINKDF----SKQPWRVDMIP-NDDKESIQEWLTDMELSYTEGPMNLNWKQIMGTVAGDDRFYMDTEEDEVTKKEAGW 331
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S1CWN1_CYCTE (FACT complex subunit (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWN1_CYCTE) HSP 1 Score: 179 bits (453), Expect = 4.550e-52 Identity = 97/205 (47.32%), Postives = 130/205 (63.41%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612 Q TE +DA+ +D +RS YDPDEM +E RER LRK+LN AFK+F KV A+ + LEFDIP+ LGF G P KE MVF+QPT L+N+T+ PFFVV L +++HVHFER+ SK D+ +I K+ +P IDMID N + + WL + EITYTQ NWK +M + D+RFY+++ +D +K AGW Sbjct: 11 QFLTEVVDASQTVDAGRRSMYDPDEMDDENRERMLRKKLNQAFKEFCKKVEAVAKKNNFSLEFDIPYRDLGFMGNPHKE---MVFVQPTLNCLVNITETPFFVVDLADVDHVHFERITYMSKAFDVVLINKDF----SKQPWRIDMID-NSDKDAIQEWLTDMEITYTQGPMNLNWKSIMNTVGSDDRFYMNTEEDEVTEKEAGW 207
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: F0YPC0_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPC0_AURAN) HSP 1 Score: 179 bits (455), Expect = 7.700e-52 Identity = 94/204 (46.08%), Postives = 130/204 (63.73%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612 Q STE +DA+V LD A+RS YDPDE+ EEQRER LRK+LN FK+F K+ R A+ LEFDIP+ L F G P +E MV IQPT + L+N+T+ PFF+V L+ +EHVHFER + D+ II+K L P ++ + + L+ + WL +C +TYT +WK +M +R D+RFY ++ ++GE KPAGW Sbjct: 86 QFSTEVVDASVALDSARRSMYDPDELDEEQRERHLRKKLNEMFKEFCKKMERVAKQHHYDLEFDIPYRDLSFHGVPNRE---MVLIQPTVHCLVNLTETPFFIVELDHVEHVHFERCTLRATNFDMVIILKNFELA----PLSVNAVPVQE-LDAIQEWLTDCSLTYTAGQASMSWKSVMNLVRSDDRFYEETDENGEPKPAGW 281
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S0AWW6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AWW6_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.040e-51 Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612 Q TE +DA+ +D +RS YDPDEM +EQRERQLRK+LN AFK+F KV AR + +EFDIP+ LGFQG P KE MVFI PT L+N+T+ PFFVV L++++HVHFERV SK D+ ++ K+ +P +DMI N + + WL + EI+YT+ NWK +M + D+RFY+++ +D +K AGW Sbjct: 32 QFFTEVVDASQTVDMGRRSMYDPDEMDDEQRERQLRKKLNEAFKEFCRKVENTARKNDYTVEFDIPYRDLGFQGNPNKE---MVFIMPTLNCLVNLTETPFFVVDLSDVDHVHFERVTFASKAFDMVLVNKDF----NKQPARVDMIP-NGDKDAIQEWLTDMEISYTEGPMNLNWKQIMQTVAADDRFYMNTEEDEVTEKEAGW 228
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A6A5B037_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B037_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.570e-51 Identity = 92/204 (45.10%), Postives = 131/204 (64.22%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDGEKKPAGW 612 Q TE I+++ LD +RS YDPDE+ EE RER LR++LN FKDF KV R + + + FDIP+ +LGF G PFKE MV +QPT + L+++T+FPFF+ L+++EHVHFERVF SK D+ + K L P + I N+ L ++ WL++ I +T+ NWK +M+ I+ D+RFYL++ +DG KPAGW Sbjct: 158 QFYTEVIESSQALDNRRRSMYDPDELDEENRERSLREKLNLTFKDFCQKVERVSEQIDKTIAFDIPYRELGFSGTPFKE---MVLLQPTVHCLVSLTEFPFFITLLDDVEHVHFERVFFGSKNFDMVFVYKNFNLV----PVRVSAISTNE-LERIKEWLDDINICFTEGTANLNWKQIMVTIKADDRFYLETDEDGVPKPAGW 353
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.630e-51 Identity = 99/205 (48.29%), Postives = 135/205 (65.85%), Query Frame = 1 Query: 1 QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVTRAARADGQHLEFDIPFDQLGFQGKPFKEASFMVFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSTSKTCDLKIIMKENMLENGGEPRMIDMIDQNKYLNKVMSWLEECEITYTQTAKPWNWKLMMMDIRGDNRFYLDSYDDG-EKKPAGW 612 QV TE +DA++ +D +RS YDPDEM +EQRERQLRK+LN AFK+F KV A+ +G LEFDIP+ LGF G P + MVF+QPT L+NVTD PFFV L+E++HVHFERV SKT D+ +I K+ +P +DMI N + + WL + E++YT+ NWK +M+ GD+RFY+++ +D +K AGW Sbjct: 456 QVFTEVVDASLQVDAGRRSMYDPDEMDDEQRERQLRKKLNQAFKEFCRKVESTAKKNGYSLEFDIPYRDLGFNGTPHNQ---MVFVQPTLNCLVNVTDTPFFVTDLSEVDHVHFERVTFMSKTFDVVLINKDF----SKQPWRVDMIP-NSDKDAIQDWLTDMELSYTEGPMNLNWKQIMLTCAGDDRFYMNTEEDEITQKEAGW 652 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102721.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102721.234.1 >prot_H-elongata_contig102721.234.1 ID=prot_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp QVSTEAIDATVNLDGAKRSNYDPDEMVEEQRERQLRKRLNNAFKDFAAKVback to top mRNA from alignment at H-elongata_contig102721:414..2252+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102721.234.1 ID=mRNA_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-elongata_contig102721:414..2252+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102721:414..2252+ >mRNA_H-elongata_contig102721.234.1 ID=mRNA_H-elongata_contig102721.234.1|Name=mRNA_H-elongata_contig102721.234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig102721:414..2252+ (Himanthalia elongata Himel1 dioecious)back to top |