mRNA_H-elongata_contig102641.228.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102641.228.1
Unique NamemRNA_H-elongata_contig102641.228.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.180e-44
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            LWHRR+GH++ + LDI++ +  NGV + G +  CDVC VG S + NHPK A++  + PFQLV  DLMGP +P +LG + Y+ K  ++H+K  E++L+K K   + + Q F QSV+TP   R+E +R DKG ++    +  YC   G+ L +ASTNTPQ
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQ 425
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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.960e-41
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K  E+ L+K K   + + + F +  V PR  R+  LR DKG +     Y+ YCL  G+ L++AS NTP
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 731
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.050e-41
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K  E+ L+K K   + + + F +  V PR  R+  LR DKG +     Y+ YCL  G+ L++AS NTP
Sbjct:  697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 853
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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.060e-41
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K  E+ L+K K   + + + F +  V PR  R+  LR DKG +     Y+ YCL  G+ L++AS NTP
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 731
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.720e-38
Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:   31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            WHRRLGHLN + LDI++     GV +  ++  C VC + K  +  HPK +  +++ P QLV +D MGP+ P +    G + Y  KI++++ K  E+YLL+ K D   +  ++   V     +R+E +R DKG ++ G+E++ YC  + + LEYA+TNTPQ
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQ 204
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 9.310e-38
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDV-LSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD  GP T  +LG +KY +K  ++H K  E+ L+K K    +   + F +  V PR  R+  LR  KG +     Y+ YCL  G+ L++AS NTP
Sbjct:  480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTP 637
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.690e-36
Identity = 63/160 (39.38%), Postives = 98/160 (61.25%), Query Frame = 1 
Query:   31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            WHRRLGHLN + LDI++     GV +  ++  C VC + K  + +HPK + H+++ P QLV +D MGP+ P +    G + Y  KI+++H K  E+YLL+ K D   +  ++   V   R +R E +R DK  ++ G+E++ YC  + + LEYA+TNTPQ
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQ 204
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.560e-36
Identity = 67/158 (42.41%), Postives = 93/158 (58.86%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            LWHRR+GH+N K LD+++    NGV + G + DC VC +GKS +  HPK   + V  PFQ V VD +GP TP +LG +KY +K  ++  K  EI L+K +   + S   F +  V P   R+  LR D G +    E++ YC   G+ LE+AS NTPQ
Sbjct:  288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQ 445
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.700e-36
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1 
Query:   28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            LWHRR+GH+N K LDI++   +NGV     + DC  C +GKS +  HPK A + V  PFQLVFVD +GP TP +LG +KY +K  ++  K  EI L+K K   + S   F +  V P    +  LR D G +    E++ Y    G+ LE+AS NTPQ
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQ 685
[Close]
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.700e-35
Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:   31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501
            WHRRLGHLN + LDI++     GV +  ++  C VC + K  +  HPK +  +++ P QLV +D MGP+ P +    G + Y  KI++++ K  E+YLL+ K D   +  ++   V     +R+E +R DKG ++ G+E++ YC  + + LEYA+TNTPQ
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQ 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE2.180e-4444.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE2.960e-4143.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE3.050e-4143.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE3.060e-4143.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KZ34_9PHAE3.720e-3838.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JYB5_9PHAE9.310e-3841.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFQ6_9PHAE2.690e-3639.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE3.560e-3642.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE9.700e-3643.04Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KT84_9PHAE1.700e-3538.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102641contigH-elongata_contig102641:866..1366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102641.228.1prot_H-elongata_contig102641.228.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102641 1067..1363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.7764368-UTR-H-elongata_contig102641:865..10661622929563.7764368-UTR-H-elongata_contig102641:865..1066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102641 866..1066 -
1691679071.9683015-UTR-H-elongata_contig102641:865..10661691679071.9683015-UTR-H-elongata_contig102641:865..1066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102641 866..1066 -
1622929563.8123133-UTR-H-elongata_contig102641:1363..13661622929563.8123133-UTR-H-elongata_contig102641:1363..1366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102641 1364..1366 -
1691679071.9960816-UTR-H-elongata_contig102641:1363..13661691679071.9960816-UTR-H-elongata_contig102641:1363..1366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102641 1364..1366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.7925117-CDS-H-elongata_contig102641:1066..13631622929563.7925117-CDS-H-elongata_contig102641:1066..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102641 1067..1363 -
1691679071.9850729-CDS-H-elongata_contig102641:1066..13631691679071.9850729-CDS-H-elongata_contig102641:1066..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102641 1067..1363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102641.228.1

>prot_H-elongata_contig102641.228.1 ID=prot_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MQATAKYYLWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKS
HKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*
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mRNA from alignment at H-elongata_contig102641:866..1366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102641.228.1 ID=mRNA_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig102641:866..1366- (Himanthalia elongata Himel1 dioecious)
GCAATGCAGGCTACAGCTAAATACTATCTGTGGCACCGTCGACTGGGGCA
CCTTAACCGCAAAATCCTGGACATCGTCAAAAATCTGGACAGCAATGGGG
TGAGCTTCGAAGGCACTATACCAGACTGTGACGTGTGTGTCGTGGGAAAA
AGCCACAAGTTGAACCACCCGAAGACGGCCAATCACAAGGTTAACCACCC
TTTCCAGCTGGTATTCGTTGACCTGATGGGACCCATCACCCCGGAGTCGC
TCGGAGACTACAAATATGTCAGCAAGATCTCCGAGGAGCACATGAAATAG
ACGGAGATTTACCTTCTGAAGTCCAAGGGCGACGTTCTCAGCTCGTTTCA
GTCGTTCGTGCAATCGGTGGTAACCCCTAGATGTTTTCGTGTCGAGCGCC
TAAGGACAGACAAAGGTGAAAAGCACATCGGCAACGAATACAAAAGCTAT
TGCCTTCAGACGGGAGTGTTCCTCGAGTACGCCAGTACCAATACCCCTCA
G
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Coding sequence (CDS) from alignment at H-elongata_contig102641:866..1366-

>mRNA_H-elongata_contig102641.228.1 ID=mRNA_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig102641:866..1366- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCTACAGCTAAATACTATCTGTGGCACCGTCGACTGGGGCACCT
TAACCGCAAAATCCTGGACATCGTCAAAAATCTGGACAGCAATGGGGTGA
GCTTCGAAGGCACTATACCAGACTGTGACGTGTGTGTCGTGGGAAAAAGC
CACAAGTTGAACCACCCGAAGACGGCCAATCACAAGGTTAACCACCCTTT
CCAGCTGGTATTCGTTGACCTGATGGGACCCATCACCCCGGAGTCGCTCG
GAGACTACAAATATGTCAGCAAGATCTCCGAGGAGCACATGAAATAGATG
CAGGCTACAGCTAAATACTATCTGTGGCACCGTCGACTGGGGCACCTTAA
CCGCAAAATCCTGGACATCGTCAAAAATCTGGACAGCAATGGGGTGAGCT
TCGAAGGCACTATACCAGACTGTGACGTGTGTGTCGTGGGAAAAAGCCAC
AAGTTGAACCACCCGAAGACGGCCAATCACAAGGTTAACCACCCTTTCCA
GCTGGTATTCGTTGACCTGATGGGACCCATCACCCCGGAGTCGCTCGGAG
ACTACAAATATGTCAGCAAGATCTCCGAGGAGCACATGAAATAG
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