prot_H-elongata_contig102641.228.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig102641.228.1
Unique Name	prot_H-elongata_contig102641.228.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	99

Homology

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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.320e-25
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH++ + LDI++ +  NGV + G +  CDVC VG S + NHPK A++  + PFQLV  DLMGP +P +LG + Y+ K  ++H+K
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIK 357

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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.050e-25
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K
Sbjct:   46 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 135

[Close]

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.090e-25
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 664

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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.180e-25
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K
Sbjct:  697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 786

[Close]

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.190e-25
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD +GP TP +LG +KY +K  ++H K
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 664

[Close]

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.170e-23
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LDI++   +NGV     + DC  C +GKS +  HPK A + V  PFQLVFVD +GP TP +LG +KY +K  ++  K
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTK 617

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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.590e-23
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++   ++G+ + G + DC  C +GKS +  HPK A + V+ PFQLVFVD  GP T  +LG +KY +K  ++H K
Sbjct:  480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTK 569

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BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.660e-21
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRR+GH+N K LD+++    NGV + G + DC VC +GKS +  HPK   + V  PFQ V VD +GP TP +LG +KY +K  ++  K
Sbjct:  288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTK 377

[Close]

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-20
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHRRLGH++ + LD+++ +D NGV + G +  CDVC +GKS +  HPK A + V+  FQ V  DLMGPI+P +   ++YVSK    + K
Sbjct:   39 LWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTK 127

[Close]

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.690e-20
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0

Query:    9 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK 98
            LWHR +GH+N K LD+++    +GV + G + DC VC +GKS +  HPK A + V  PFQ V VD +GP TP +LG +KY +   ++  K
Sbjct:  445 LWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPSTPTALGGFKYATNFVDQQTK 534

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	3.320e-25	47.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNH5_9PHAE	7.050e-25	47.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJN3_9PHAE	7.090e-25	47.78	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	7.180e-25	47.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	7.190e-25	47.78	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JBV6_9PHAE	1.170e-23	48.89	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JYB5_9PHAE	1.590e-23	46.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXM1_9PHAE	1.660e-21	46.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBU1_9PHAE	1.080e-20	46.67	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KDX9_9PHAE	3.690e-20	44.44	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 8..50 e-value: 2.3E-8 score: 33.8
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..84
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig102641	contig	H-elongata_contig102641:1067..1363 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig102641.228.1	mRNA_H-elongata_contig102641.228.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig102641 866..1366 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig102641.228.1 ID=prot_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MQATAKYYLWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKS
HKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like