mRNA_H-elongata_contig102641.228.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.180e-44 Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 LWHRR+GH++ + LDI++ + NGV + G + CDVC VG S + NHPK A++ + PFQLV DLMGP +P +LG + Y+ K ++H+K E++L+K K + + Q F QSV+TP R+E +R DKG ++ + YC G+ L +ASTNTPQ Sbjct: 268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQ 425
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 157 bits (396), Expect = 2.960e-41 Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498 LWHRR+GH+N K LD+++ ++G+ + G + DC C +GKS + HPK A + V+ PFQLVFVD +GP TP +LG +KY +K ++H K E+ L+K K + + + F + V PR R+ LR DKG + Y+ YCL G+ L++AS NTP Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 731
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 157 bits (396), Expect = 3.050e-41 Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498 LWHRR+GH+N K LD+++ ++G+ + G + DC C +GKS + HPK A + V+ PFQLVFVD +GP TP +LG +KY +K ++H K E+ L+K K + + + F + V PR R+ LR DKG + Y+ YCL G+ L++AS NTP Sbjct: 697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 853
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 157 bits (396), Expect = 3.060e-41 Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498 LWHRR+GH+N K LD+++ ++G+ + G + DC C +GKS + HPK A + V+ PFQLVFVD +GP TP +LG +KY +K ++H K E+ L+K K + + + F + V PR R+ LR DKG + Y+ YCL G+ L++AS NTP Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTP 731
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 139 bits (350), Expect = 3.720e-38 Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 1 Query: 31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 WHRRLGHLN + LDI++ GV + ++ C VC + K + HPK + +++ P QLV +D MGP+ P + G + Y KI++++ K E+YLL+ K D + ++ V +R+E +R DKG ++ G+E++ YC + + LEYA+TNTPQ Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQ 204
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 147 bits (370), Expect = 9.310e-38 Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDV-LSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTP 498 LWHRR+GH+N K LD+++ ++G+ + G + DC C +GKS + HPK A + V+ PFQLVFVD GP T +LG +KY +K ++H K E+ L+K K + + F + V PR R+ LR KG + Y+ YCL G+ L++AS NTP Sbjct: 480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTP 637
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.690e-36 Identity = 63/160 (39.38%), Postives = 98/160 (61.25%), Query Frame = 1 Query: 31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 WHRRLGHLN + LDI++ GV + ++ C VC + K + +HPK + H+++ P QLV +D MGP+ P + G + Y KI+++H K E+YLL+ K D + ++ V R +R E +R DK ++ G+E++ YC + + LEYA+TNTPQ Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQ 204
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 142 bits (358), Expect = 3.560e-36 Identity = 67/158 (42.41%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 LWHRR+GH+N K LD+++ NGV + G + DC VC +GKS + HPK + V PFQ V VD +GP TP +LG +KY +K ++ K EI L+K + + S F + V P R+ LR D G + E++ YC G+ LE+AS NTPQ Sbjct: 288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQ 445
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 141 bits (355), Expect = 9.700e-36 Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1 Query: 28 LWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESLGDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 LWHRR+GH+N K LDI++ +NGV + DC C +GKS + HPK A + V PFQLVFVD +GP TP +LG +KY +K ++ K EI L+K K + S F + V P + LR D G + E++ Y G+ LE+AS NTPQ Sbjct: 528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQ 685
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.700e-35 Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 1 Query: 31 WHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSHKLNHPKTANHKVNHPFQLVFVDLMGPITPESL---GDYKYVSKISEEHMK*TEIYLLKSKGDVLSSFQSFVQSVVTPRCFRVERLRTDKGEKHIGNEYKSYCLQTGVFLEYASTNTPQ 501 WHRRLGHLN + LDI++ GV + ++ C VC + K + HPK + +++ P QLV +D MGP+ P + G + Y KI++++ K E+YLL+ K D + ++ V +R+E +R DKG ++ G+E++ YC + + LEYA+TNTPQ Sbjct: 421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQ 580 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102641.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102641.228.1 >prot_H-elongata_contig102641.228.1 ID=prot_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp MQATAKYYLWHRRLGHLNRKILDIVKNLDSNGVSFEGTIPDCDVCVVGKSback to top mRNA from alignment at H-elongata_contig102641:866..1366- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102641.228.1 ID=mRNA_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig102641:866..1366- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102641:866..1366- >mRNA_H-elongata_contig102641.228.1 ID=mRNA_H-elongata_contig102641.228.1|Name=mRNA_H-elongata_contig102641.228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig102641:866..1366- (Himanthalia elongata Himel1 dioecious)back to top |