mRNA_H-elongata_contig102486.218.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI) HSP 1 Score: 289 bits (739), Expect = 5.130e-94 Identity = 135/158 (85.44%), Postives = 152/158 (96.20%), Query Frame = 1 Query: 10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPKDALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL++DMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+ LG+LEVELCFKTARFHACAQP+PR
Sbjct: 233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLKDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 390
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE) HSP 1 Score: 280 bits (717), Expect = 1.630e-84 Identity = 136/172 (79.07%), Postives = 152/172 (88.37%), Query Frame = 1 Query: 10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPK--------------DALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPK DALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL+RDMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+ LG+LEVELCFKTARFHACAQP+PR
Sbjct: 233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKCLSVCVLSLLLRPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 404
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.530e-15 Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1 Query: 34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALV 279
+D A+RR GRL KW+GD LL G+PKDA+E Y + ++ A DPLWHAG LEG+AA L A++D + PT + L+
Sbjct: 283 AADRARARRRWGRLRKWLGDLALLAGTPKDAVELYDAAAAEL-AKADPLWHAGALEGFAAALVALADDETPTAVPPEIFKLI 363
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A1X6P8K3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8K3_PORUM) HSP 1 Score: 69.3 bits (168), Expect = 1.070e-10 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 43 SRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA 222
S+ AKRR GRL KW+GD LL+GSP DAL Y+ ++ +RA+ D LW AG EG AA LA
Sbjct: 510 SKLAKRRLGRLDKWLGDYFLLIGSPSDALTKYNSAVERSRANSDRLWLAGATEGAAAALA 569
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A4D9D6X0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6X0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10 Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 64 QGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAA 213
+GR KW+GD CLL G+P+DALE Y+Q++++ +A+ +PLW AG LEG+ A
Sbjct: 304 RGRWGKWVGDLCLLAGTPQDALEAYAQALAECKAAGEPLWQAGALEGWIA 353
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A0D2X4E8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4E8_CAPO3) HSP 1 Score: 65.9 bits (159), Expect = 1.660e-9 Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 19 DREEGVSDSR--SAKRRQ--GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGD 261
+R G+ D+R +A R++ GR K GD CLL+GSP DA+ HY++++ T++++D L+ AGCLE +AA L P V D
Sbjct: 388 ERTGGIDDARFYNANRKKIVGRFEKLAGDICLLVGSPDDAIVHYTEAIEQTKSANDWLYLAGCLECFAATLLVKHKMGDPLVLSD 472
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S2FJH2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FJH2_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 4.580e-8 Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 1 Query: 61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA-------AMSDADHPTVHGDQALA 273
R GRL K IGD CL++GSP DALEHY S R D W A LEG A + A+ D++ G ALA
Sbjct: 50 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELRRQVGDTCWQAAALEGRACAILLAHHLGIAIDDSEDDADGGTVALA 127
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A830H8L0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8L0_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 1.220e-7 Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1 Query: 61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL-------AAMSDADHPTVHGDQALA 273
R GRL K IGD CL++GSP DALEHY S +R D W A LEG A + A+ D++ G ALA
Sbjct: 337 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELSRQVGDTCWQAAALEGRACAILLAHHLGVAIDDSEDDADGGTVALA 414
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S1ES92_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES92_9RHOD) HSP 1 Score: 56.6 bits (135), Expect = 2.630e-6 Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 Query: 34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL 219
S ++R++GR+HK +GD LLLG+ DAL + + RA+ D LW AG +EG A L
Sbjct: 298 ADSSMLSRRKEGRIHKIVGDHLLLLGAASDALSSFKSASEQCRANSDRLWLAGAIEGEIATL 359
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A5B8MCM1_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCM1_9CHLO) HSP 1 Score: 55.8 bits (133), Expect = 4.640e-6 Identity = 41/130 (31.54%), Postives = 56/130 (43.08%), Query Frame = 1 Query: 67 GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARF 456
GRL K +GD CL + SP DAL HY+ ++ T+ D LWHA LEG A A RD + A ++ W + +A C++A ++ Y L L L KTA F
Sbjct: 381 GRLKKELGDYCLCVRSPDDALVHYAAALDVTKECGDILWHASALEGTCAV---------------DVCAFFRDNEMVEPV--ASKKLEQLWLSVRQA-----CDQAANL---YKSLPTLRASLLLKTAHF 485 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102486.218.1 >prot_H-elongata_contig102486.218.1 ID=prot_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp MYRSWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMback to top mRNA from alignment at H-elongata_contig102486:325..1858+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1534bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102486:325..1858+ >mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious)back to top |