Homology
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)
HSP 1 Score: 289 bits (739), Expect = 5.130e-94
Identity = 135/158 (85.44%), Postives = 152/158 (96.20%), Query Frame = 1
Query: 10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPKDALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL++DMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+ LG+LEVELCFKTARFHACAQP+PR
Sbjct: 233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLKDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 390
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)
HSP 1 Score: 280 bits (717), Expect = 1.630e-84
Identity = 136/172 (79.07%), Postives = 152/172 (88.37%), Query Frame = 1
Query: 10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPK--------------DALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPK DALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL+RDMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+ LG+LEVELCFKTARFHACAQP+PR
Sbjct: 233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKCLSVCVLSLLLRPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 404
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA)
HSP 1 Score: 82.0 bits (201), Expect = 2.530e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALV 279
+D A+RR GRL KW+GD LL G+PKDA+E Y + ++ A DPLWHAG LEG+AA L A++D + PT + L+
Sbjct: 283 AADRARARRRWGRLRKWLGDLALLAGTPKDAVELYDAAAAEL-AKADPLWHAGALEGFAAALVALADDETPTAVPPEIFKLI 363
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A1X6P8K3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8K3_PORUM)
HSP 1 Score: 69.3 bits (168), Expect = 1.070e-10
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 43 SRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA 222
S+ AKRR GRL KW+GD LL+GSP DAL Y+ ++ +RA+ D LW AG EG AA LA
Sbjct: 510 SKLAKRRLGRLDKWLGDYFLLIGSPSDALTKYNSAVERSRANSDRLWLAGATEGAAAALA 569
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A4D9D6X0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6X0_9STRA)
HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query: 64 QGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAA 213
+GR KW+GD CLL G+P+DALE Y+Q++++ +A+ +PLW AG LEG+ A
Sbjct: 304 RGRWGKWVGDLCLLAGTPQDALEAYAQALAECKAAGEPLWQAGALEGWIA 353
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A0D2X4E8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4E8_CAPO3)
HSP 1 Score: 65.9 bits (159), Expect = 1.660e-9
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 19 DREEGVSDSR--SAKRRQ--GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGD 261
+R G+ D+R +A R++ GR K GD CLL+GSP DA+ HY++++ T++++D L+ AGCLE +AA L P V D
Sbjct: 388 ERTGGIDDARFYNANRKKIVGRFEKLAGDICLLVGSPDDAIVHYTEAIEQTKSANDWLYLAGCLECFAATLLVKHKMGDPLVLSD 472
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A7S2FJH2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FJH2_9CHLO)
HSP 1 Score: 59.3 bits (142), Expect = 4.580e-8
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 1
Query: 61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA-------AMSDADHPTVHGDQALA 273
R GRL K IGD CL++GSP DALEHY S R D W A LEG A + A+ D++ G ALA
Sbjct: 50 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELRRQVGDTCWQAAALEGRACAILLAHHLGIAIDDSEDDADGGTVALA 127
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A830H8L0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8L0_9CHLO)
HSP 1 Score: 60.5 bits (145), Expect = 1.220e-7
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1
Query: 61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL-------AAMSDADHPTVHGDQALA 273
R GRL K IGD CL++GSP DALEHY S +R D W A LEG A + A+ D++ G ALA
Sbjct: 337 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELSRQVGDTCWQAAALEGRACAILLAHHLGVAIDDSEDDADGGTVALA 414
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A7S1ES92_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES92_9RHOD)
HSP 1 Score: 56.6 bits (135), Expect = 2.630e-6
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL 219
S ++R++GR+HK +GD LLLG+ DAL + + RA+ D LW AG +EG A L
Sbjct: 298 ADSSMLSRRKEGRIHKIVGDHLLLLGAASDALSSFKSASEQCRANSDRLWLAGAIEGEIATL 359
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match:
A0A5B8MCM1_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCM1_9CHLO)
HSP 1 Score: 55.8 bits (133), Expect = 4.640e-6
Identity = 41/130 (31.54%), Postives = 56/130 (43.08%), Query Frame = 1
Query: 67 GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARF 456
GRL K +GD CL + SP DAL HY+ ++ T+ D LWHA LEG A A RD + A ++ W + +A C++A ++ Y L L L KTA F
Sbjct: 381 GRLKKELGDYCLCVRSPDDALVHYAAALDVTKECGDILWHASALEGTCAV---------------DVCAFFRDNEMVEPV--ASKKLEQLWLSVRQA-----CDQAANL---YKSLPTLRASLLLKTAHF 485
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 12
0 1 Expect = 5.13e-94 / Id = 85.44 Expect = 1.63e-84 / Id = 79.07 Expect = 2.53e-15 / Id = 47.56 Expect = 1.07e-10 / Id = 56.67 Expect = 1.37e-10 / Id = 54.00 Expect = 1.66e-9 / Id = 41.18 Expect = 4.58e-8 / Id = 43.59 Expect = 1.22e-7 / Id = 43.59 Expect = 2.63e-6 / Id = 41.94 Expect = 4.64e-6 / Id = 31.54 Sequence D8LGF8_ECTSI A0A6H5J9H9_9PHAE A0A835ZHG4_9STRA A0A1X6P8K3_PORUM A0A4D9D6X0_9STRA A0A0D2X4E8_CAPO3 A0A7S2FJH2_9CHLO A0A830H8L0_9CHLO A0A7S1ES92_9RHOD A0A5B8MCM1_9CHLO Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 291.2 Seed ortholog evalue 3e-76 Seed eggNOG ortholog 2880.D8LGF8 Preferred name TRAPPC9 KEGG ko ko:K20306 GOs GO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0000916,GO:0000919,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0006355,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006893,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007107,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030008,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030427,GO:0030865,GO:0030866,GO:0030900,GO:0031032,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032153,GO:0032154,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032991,GO:0033036,GO:0033206,GO:0034498,GO:0034613,GO:0035838,GO:0036063,GO:0036213,GO:0042147,GO:0042886,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048137,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051286,GO:0051301,GO:0051321,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060255,GO:0060322,GO:0061024,GO:0061640,GO:0061796,GO:0061982,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0097708,GO:0098590,GO:0098772,GO:0098791,GO:0098876,GO:0099023,GO:0140013,GO:1902410,GO:1903046,GO:1903047,GO:1903506,GO:1990071,GO:2000112,GO:2001141 EggNOG free text desc. cell plate assembly EggNOG OGs KOG1953@1,KOG1953@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04131 Hectar predicted targeting category other localisation Ec32 ortholog description Tetratricopeptide-like helical domain Ec32 ortholog Ec-16_003880.1 Exons 3 Model size 486 Cds size 486 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929562.6754003-CDS-H-elongata_contig102486:324..444 1622929562.6754003-CDS-H-elongata_contig102486:324..444 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 325..444 + 1691679071.4873226-CDS-H-elongata_contig102486:324..444 1691679071.4873226-CDS-H-elongata_contig102486:324..444 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 325..444 + 1622929562.6882045-CDS-H-elongata_contig102486:862..1097 1622929562.6882045-CDS-H-elongata_contig102486:862..1097 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 863..1097 + 1691679071.5024889-CDS-H-elongata_contig102486:862..1097 1691679071.5024889-CDS-H-elongata_contig102486:862..1097 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 863..1097 + 1622929562.7026787-CDS-H-elongata_contig102486:1727..1858 1622929562.7026787-CDS-H-elongata_contig102486:1727..1858 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 1728..1858 + 1691679071.5099688-CDS-H-elongata_contig102486:1727..1858 1691679071.5099688-CDS-H-elongata_contig102486:1727..1858 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102486 1728..1858 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102486.218.1
>prot_H-elongata_contig102486.218.1 ID=prot_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MYRSWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSM back to top mRNA from alignment at H-elongata_contig102486:325..1858+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1534bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious)ATGTATAGGTCCTGGTACGATCGGGAAGAAGGGGTCAGCGACAGCCGGAG
CGCCAAGCGTCGCCAGGGTCGCTTGCACAAGTGGATCGGAGATACTTGCT
TACTCCTCGGGTCACCGAAG GTTGATGCCCGTCCGATTGGTGTGGCTGAG
TGGGCGCCTACTAGACAGGATTGGGCAGACATACGGACTATATAATGGCG
CTTTCGCCAAAGCCGTAGTAGCTTGGATTGGGTTGAAAAACCGGAAGGAG
GCATTTCAAACCAGGGGAAGGATGCCTCTACGCGGAGGATTCTGAGTTAT
GTGAATTTTTTGTTGTGAACATACTGGAATAATAATGTGTAATTTATATA
TATATATGCATATAGTTACATATCTTTTAATGTTGATTCGGGACGCGGGC
CTATCGTAGAACGAAACTGCAGGGTGACGAGTCTCGCGTCGGGCGCAAGC
GCTTTGAGGAGGAAGTTTTATATTTACTTTGTTTTGTCGCGTTATCCCCC
AAGCTCAGCTTTTCGCGCGCGTCGCGCTTGTGTCGCAGGACGCGCTGGAG
CACTACAGCCAGTCCATGTCGGATACGAGGGCATCGCACGACCCCCTGTG
GCACGCAGGGTGTCTCGAGGGCTACGCGGCGTGTCTGGCGGCGATGAGCG
ATGCGGATCACCCGACCGTACACGGAGACCAGGCGCTCGCCCTCGTGCGA
GACATGGCCAAAGACAGGGAACTCGAGAAGGCGGGGCAGGAGGGAAACTC
CACGTGGACCGTGCTCGCCGAAG GTTTGGTTTGATTTGATTTGATTTAAT
TTGGATTGGTTTAGTCATCGACTTGGCGGTGGACTACTTAGTGTTGGCGA
CACACACTCGTTTAAGCATTGCGCGGATGCGGTGCGGCTTTCTGTGGCGT
AGGATTCCCACTTTCATCGAGAGGTCGAAGTCGTAATGTTCACATCGGGT
TTTGTGGTGGATGGATAAAGGTGAAGCTGTTGGTCCCCCACGCTATTCCT
CTGGCTGGATATTATCGCGTGTGTGTGTTTGTGTGTGTATGGTTGTAAAA
AAGGAAGGGGGTTAGGGTTACGTTAGGCTGGCTTACCCATATGGACAAAG
AGGAAGAGCCCAGTCTTCTCCAATACTATGGGCACTGTAAAGCGTATGGG
CGGTCATCGTGTGGTCCGACCTCCAACACGCAGCCCAGCCCTGCTTACCC
TTTGGCGAACATTTTAGAAGCAATCCTTCTGCGTCCCCCGTCCCCCACCC
TCCGCCCCAAGAGAGGCCACACCTCGCCTCCCTCTCGCATACGGCCTCCT
TTGCGCTCGTCCAACTCTCACCACTGGATTTATCCGTGCGTTTTTCTGTT
TATATTGTATTGTCTCCCATTCCCCCTACCCATCCCCCACCAACCCGAGA
AAGCCGTGATATCAGAGAAATGCGAAGAGGCGTTATCAGTACTCAGTCGA
TACTCTCTTCTCGGGGCCCTGGAGGTGGAGCTGTGTTTCAAGACGGCAAG
GTTTCACGCGTGCGCGCAGCCAAGCCCCCGGTGA back to top Coding sequence (CDS) from alignment at H-elongata_contig102486:325..1858+
>mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious) back to top