Homology
BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match:
D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI)
HSP 1 Score: 154 bits (388), Expect = 2.250e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
R+RP A CMP++QR QGC PLLP IG + VVDH+ E LS++ SDLPCVQ+GTCPVP FRC KGHVW NG PVCFYCP+CAD+R+T ++K+DLE M+++A+ +GG C+++ Y G
Sbjct: 17 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 143
BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match:
A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE)
HSP 1 Score: 154 bits (388), Expect = 6.490e-42
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
R+RP A CMP++QR QGC PLLP IG + VVDH+ E LS++ SDLPCVQ+GTCPVP FRC KGHVW NG PVCFYCP+CAD+R+T ++K+DLE M+++A+ +GG C+++ Y G
Sbjct: 194 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 320
BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match:
A0A7H1MJB4_RALSL (Uncharacterized protein n=5 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A7H1MJB4_RALSL)
HSP 1 Score: 50.8 bits (120), Expect = 7.880e-5
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 202 FRCPKGHVWASNGKPVC--FYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAY 381
FRC +GH W + G V +CP CA R ++ +EVM+++A ARGG C+S++Y
Sbjct: 174 FRCAQGHEWETRGVTVTQGTWCPTCARDR---------SRRGIEVMREMAAARGGRCISESY 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.25e-43 / Id = 54.62 Expect = 6.49e-42 / Id = 54.62 Expect = 7.88e-5 / Id = 38.71 Sequence D7FQ22_ECTSI A0A6H5JCH6_9PHAE A0A7H1MJB4_RALSL back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-01_007770.1 Exons 3 Model size 387 Cds size 360 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929562.469787-CDS-H-elongata_contig102459:55..227 1622929562.469787-CDS-H-elongata_contig102459:55..227 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 56..227 - 1691679071.4137652-CDS-H-elongata_contig102459:55..227 1691679071.4137652-CDS-H-elongata_contig102459:55..227 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 56..227 - 1622929562.491421-CDS-H-elongata_contig102459:780..902 1622929562.491421-CDS-H-elongata_contig102459:780..902 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 781..902 - 1691679071.4223318-CDS-H-elongata_contig102459:780..902 1691679071.4223318-CDS-H-elongata_contig102459:780..902 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 781..902 - 1622929562.5086312-CDS-H-elongata_contig102459:1262..1328 1622929562.5086312-CDS-H-elongata_contig102459:1262..1328 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 1263..1328 - 1691679071.4312332-CDS-H-elongata_contig102459:1262..1328 1691679071.4312332-CDS-H-elongata_contig102459:1262..1328 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102459 1263..1328 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929562.526673-UTR-H-elongata_contig102459:1328..1355 1622929562.526673-UTR-H-elongata_contig102459:1328..1355 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig102459 1329..1355 - 1691679071.4468453-UTR-H-elongata_contig102459:1328..1355 1691679071.4468453-UTR-H-elongata_contig102459:1328..1355 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig102459 1329..1355 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102459.215.1
>prot_H-elongata_contig102459.215.1 ID=prot_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MPRHQRQQGCAPLLPIGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQ back to top mRNA from alignment at H-elongata_contig102459:56..1355-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious)CGAAAGCGCCCGCCGTTCGCCTTGTGC ATGCCGAGGCACCAACGTCAACA
AGGATGCGCCCCGCTTCTTCCCATCGGTGAGGTAGATCGGATC GTATAGA
GGACATTCCGCGCGCGCGCGACAAGAGTATATTGTTTTGTGCGATACATG
AAGTATAGGAGGTTCCCGCAGAGTGGGTCTCGACCAGCGCAGCGTTCCTG
TGTATGTGCATAACTTTTCCCGGATATCAGTGTGGCGGTACTGTACGGTA
CAGTATGTGGGCGCGTCTTGATCGTAGGAAAAGAGCACACTCCAGTTTGC
ACCCAATAGCCGCTTATCGAAGTATTGACAAGCAGTTTGCGTAGAATTAG
GTATGCAATGTTTCTTGTTCGTATCCAAGCTTCTCGTCCCCTCTGCCCCC
GCTTGCTTATCATTTGACAAACGACGATCGTGCCGTTATCGCTAGAAAAC
AAGGATGCGGTGGTGGATCACATCGTCTCGGAGCCGATGGTGCGCGCGAA
GCTCTCGGACTTCGCGTCTGACCTCCCCTGTGTCCAGAGCGGGACGTGCC
CCGTGCCGGCCTTTCGCTGTCCCAA GTGAGTGACAATCGTGTGAAATATG
TCCCTTTTTTTTTTAGGAAGGATACCGGATGCGCGGGGGATCAGCGCAAC
TTACTGAAGCACGCGTGCGTGAAATTAGGTGTTCGCCGCACTTGCCTTGT
AGGGAATTAGATTCGCGGTTGTGAGTTATGCCCCAATACACTCAGGTGTA
CTAATGGCGCAGACACGAGCGTCTCTACTCTCGCGGAGTTTCGCGCGTAC
CCCTGTGGTTTAACATTTTGCGTACGCGAAAGACGCATCGCCTCGGGTTA
AAACAAAAATAGAAGGCGTCCGCCGACACCCTACCGAGTATTGTGCTCCC
ACGGGGATCGAAGAGGGACACAAGAAACACGCCCATCGCGCTCTTCGGAA
ACCCTCGCGCGGTCGGTACGCGTGCTTCTGTTTACAATGAGCACCACTTC
ATTCTCATTCTTTCCTTCAACATCCCTGGAAATACCCGCGCGGACGGTAC
CCGTGCTCCTGGTTACGACGAGCACTTCTTCCCTTTCACTATTTCCTCCA
ACATCCCGACACGTTGACACGTTCAAAGAGGCCACGTGTGGGCCTCGAAC
GGCAAGCCGGTGTGTTTTTACTGCCCTGTCTGCGCGGACTCGAGGGTGAC
AAGGTTCGGACACGAGAGGCGACAGAAGAAAGACCTGGAGGTGATGAAGG
ATCTGGCCAAAGCGCGGGGTGGCGTCTGCCTCTCCAAGGCTTACCGCGGT
back to top Coding sequence (CDS) from alignment at H-elongata_contig102459:56..1355-
>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious) back to top