mRNA_H-elongata_contig102459.215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.250e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1

Query:    1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
            R+RP  A CMP++QR QGC PLLP IG   +   VVDH+  E      LS++ SDLPCVQ+GTCPVP FRC KGHVW  NG PVCFYCP+CAD+R+T      ++K+DLE M+++A+ +GG C+++ Y G
Sbjct:   17 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 143

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BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.490e-42
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1

Query:    1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
            R+RP  A CMP++QR QGC PLLP IG   +   VVDH+  E      LS++ SDLPCVQ+GTCPVP FRC KGHVW  NG PVCFYCP+CAD+R+T      ++K+DLE M+++A+ +GG C+++ Y G
Sbjct:  194 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 320

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BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: A0A7H1MJB4_RALSL (Uncharacterized protein n=5 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A7H1MJB4_RALSL)

HSP 1 Score: 50.8 bits (120), Expect = 7.880e-5
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1

Query:  202 FRCPKGHVWASNGKPVC--FYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAY 381
            FRC +GH W + G  V    +CP CA  R          ++ +EVM+++A ARGG C+S++Y
Sbjct:  174 FRCAQGHEWETRGVTVTQGTWCPTCARDR---------SRRGIEVMREMAAARGGRCISESY 226

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FQ22_ECTSI	2.250e-43	54.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JCH6_9PHAE	6.490e-42	54.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7H1MJB4_RALSL	7.880e-5	38.71	Uncharacterized protein n=5 Tax=Ralstonia solanace...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig102459	contig	H-elongata_contig102459:56..1355 -

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig102459.215.1	prot_H-elongata_contig102459.215.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig102459 56..1328 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929562.469787-CDS-H-elongata_contig102459:55..227	1622929562.469787-CDS-H-elongata_contig102459:55..227	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 56..227 -
1691679071.4137652-CDS-H-elongata_contig102459:55..227	1691679071.4137652-CDS-H-elongata_contig102459:55..227	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 56..227 -
1622929562.491421-CDS-H-elongata_contig102459:780..902	1622929562.491421-CDS-H-elongata_contig102459:780..902	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 781..902 -
1691679071.4223318-CDS-H-elongata_contig102459:780..902	1691679071.4223318-CDS-H-elongata_contig102459:780..902	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 781..902 -
1622929562.5086312-CDS-H-elongata_contig102459:1262..1328	1622929562.5086312-CDS-H-elongata_contig102459:1262..1328	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 1263..1328 -
1691679071.4312332-CDS-H-elongata_contig102459:1262..1328	1691679071.4312332-CDS-H-elongata_contig102459:1262..1328	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig102459 1263..1328 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929562.526673-UTR-H-elongata_contig102459:1328..1355	1622929562.526673-UTR-H-elongata_contig102459:1328..1355	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig102459 1329..1355 -
1691679071.4468453-UTR-H-elongata_contig102459:1328..1355	1691679071.4468453-UTR-H-elongata_contig102459:1328..1355	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig102459 1329..1355 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig102459:56..1355-
coding sequence from alignment at H-elongata_contig102459:56..1355-

protein sequence of mRNA_H-elongata_contig102459.215.1

>prot_H-elongata_contig102459.215.1 ID=prot_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MPRHQRQQGCAPLLPIGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQ
SGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLE
VMKDLAKARGGVCLSKAYRG

mRNA from alignment at H-elongata_contig102459:56..1355-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious)
CGAAAGCGCCCGCCGTTCGCCTTGTGCATGCCGAGGCACCAACGTCAACA
AGGATGCGCCCCGCTTCTTCCCATCGGTGAGGTAGATCGGATCGTATAGA
GGACATTCCGCGCGCGCGCGACAAGAGTATATTGTTTTGTGCGATACATG
AAGTATAGGAGGTTCCCGCAGAGTGGGTCTCGACCAGCGCAGCGTTCCTG
TGTATGTGCATAACTTTTCCCGGATATCAGTGTGGCGGTACTGTACGGTA
CAGTATGTGGGCGCGTCTTGATCGTAGGAAAAGAGCACACTCCAGTTTGC
ACCCAATAGCCGCTTATCGAAGTATTGACAAGCAGTTTGCGTAGAATTAG
GTATGCAATGTTTCTTGTTCGTATCCAAGCTTCTCGTCCCCTCTGCCCCC
GCTTGCTTATCATTTGACAAACGACGATCGTGCCGTTATCGCTAGAAAAC
AAGGATGCGGTGGTGGATCACATCGTCTCGGAGCCGATGGTGCGCGCGAA
GCTCTCGGACTTCGCGTCTGACCTCCCCTGTGTCCAGAGCGGGACGTGCC
CCGTGCCGGCCTTTCGCTGTCCCAAGTGAGTGACAATCGTGTGAAATATG
TCCCTTTTTTTTTTAGGAAGGATACCGGATGCGCGGGGGATCAGCGCAAC
TTACTGAAGCACGCGTGCGTGAAATTAGGTGTTCGCCGCACTTGCCTTGT
AGGGAATTAGATTCGCGGTTGTGAGTTATGCCCCAATACACTCAGGTGTA
CTAATGGCGCAGACACGAGCGTCTCTACTCTCGCGGAGTTTCGCGCGTAC
CCCTGTGGTTTAACATTTTGCGTACGCGAAAGACGCATCGCCTCGGGTTA
AAACAAAAATAGAAGGCGTCCGCCGACACCCTACCGAGTATTGTGCTCCC
ACGGGGATCGAAGAGGGACACAAGAAACACGCCCATCGCGCTCTTCGGAA
ACCCTCGCGCGGTCGGTACGCGTGCTTCTGTTTACAATGAGCACCACTTC
ATTCTCATTCTTTCCTTCAACATCCCTGGAAATACCCGCGCGGACGGTAC
CCGTGCTCCTGGTTACGACGAGCACTTCTTCCCTTTCACTATTTCCTCCA
ACATCCCGACACGTTGACACGTTCAAAGAGGCCACGTGTGGGCCTCGAAC
GGCAAGCCGGTGTGTTTTTACTGCCCTGTCTGCGCGGACTCGAGGGTGAC
AAGGTTCGGACACGAGAGGCGACAGAAGAAAGACCTGGAGGTGATGAAGG
ATCTGGCCAAAGCGCGGGGTGGCGTCTGCCTCTCCAAGGCTTACCGCGGT

Coding sequence (CDS) from alignment at H-elongata_contig102459:56..1355-

>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious)
ATGCCGAGGCACCAACGTCAACAAGGATGCGCCCCGCTTCTTCCCATCGG
TGAGGTAGATCGGATCATGCCGAGGCACCAACGTCAACAAGGATGCGCCC
CGCTTCTTCCCATCGGTGAGGTAGATCGGATCGATGCGGTGGTGGATCAC
ATCGTCTCGGAGCCGATGGTGCGCGCGAAGCTCTCGGACTTCGCGTCTGA
CCTCCCCTGTGTCCAGAGCGGGACGTGCCCCGTGCCGGCCTTTCGCTGTC
CCAAGATGCGGTGGTGGATCACATCGTCTCGGAGCCGATGGTGCGCGCGA
AGCTCTCGGACTTCGCGTCTGACCTCCCCTGTGTCCAGAGCGGGACGTGC
CCCGTGCCGGCCTTTCGCTGTCCCAAAGGCCACGTGTGGGCCTCGAACGG
CAAGCCGGTGTGTTTTTACTGCCCTGTCTGCGCGGACTCGAGGGTGACAA
GGTTCGGACACGAGAGGCGACAGAAGAAAGACCTGGAGGTGATGAAGGAT
CTGGCCAAAGCGCGGGGTGGCGTCTGCCTCTCCAAGGCTTACCGCGGTAG
GCCACGTGTGGGCCTCGAACGGCAAGCCGGTGTGTTTTTACTGCCCTGTC
TGCGCGGACTCGAGGGTGACAAGGTTCGGACACGAGAGGCGACAGAAGAA
AGACCTGGAGGTGATGAAGGATCTGGCCAAAGCGCGGGGTGGCGTCTGCC
TCTCCAAGGCTTACCGCGGT