Homology
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match:
D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)
HSP 1 Score: 262 bits (669), Expect = 2.290e-80
Identity = 162/309 (52.43%), Postives = 183/309 (59.22%), Query Frame = 1
Query: 16 DPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDEXXXXXRDGDANATGDKKALPKAVRREEDTGVEL----GDVTSSGRCG--------------------------------------------------RKRRRPRPRSYNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDR----TLGVVGSG-KGAT-EGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNPQ 762
DP G EE+AG V+EH+D WGF+WMPAIE+FVEQA + N ++ P DT G T++ R PRP SYNETLLADK+FHNP ASETMADA+GILRPASFVLDV +DDR GV +G KGAT EG + A+V GG +D+ WFYDTVRDRQNRLWAD+RVRKGVELARKGQHQAA+D YTQALGMCPDHDDGLVARGAAFATTGRLRQA QDLSRALS+NPQ
Sbjct: 52 DPPNG-DEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQ---------NXXXXXESSPLGANYRSDTDXXXXXLRGPPTNTSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGE--ADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQ 348
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match:
A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)
HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13
Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 1
Query: 358 MADAYGILRPASFVLDVRDDDRTLGVVGSGKGATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGL 675
MA A+ + RP SF +DV D G GA R WF++ +R+RQ+R WAD+RV KG ELAR GQH AA+ Y QALGMC H D +
Sbjct: 1 MASAFRVCRPLSFAVDVAAD---------GAGA-------------------RDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match:
L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC)
HSP 1 Score: 55.1 bits (131), Expect = 2.250e-6
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 526 YDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNP 759
Y +R +QN WA+ VRKG+ A + A+ Y AL + ++ D VA GAA+A T + +A + S+AL + P
Sbjct: 3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQP 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.29e-80 / Id = 52.43 Expect = 1.16e-13 / Id = 42.45 Expect = 2.25e-6 / Id = 35.90 Sequence D7FK49_ECTSI A0A836CKS1_9STRA L1I460_GUITC
Match Name E-value Identity Description
D7FK49_ECTSI 2.290e-80 52.43 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] A0A836CKS1_9STRA 1.160e-13 42.45 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more] L1I460_GUITC 2.250e-6 35.90 Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 269.2 Seed ortholog evalue 1.9e-69 Seed eggNOG ortholog 2880.D7FK49 Preferred name TTC14 KEGG ko ko:K17908 KEGG TC 9.A.15.1 KEGG Pathway ko04136,ko04138,ko04140,map04136,map04138,map04140 EggNOG free text desc. TPR repeat EggNOG OGs 28H66@1,2QPJ1@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko02000,ko03029,ko04131 Hectar predicted targeting category other localisation Ec32 ortholog description Tetratricopeptide-like helical domain Ec32 ortholog Ec-04_005830.1 Exons 2 Model size 762 Cds size 762 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929562.2801178-CDS-H-elongata_contig102402:0..147 1622929562.2801178-CDS-H-elongata_contig102402:0..147 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102402 1..147 - 1691679071.3026526-CDS-H-elongata_contig102402:0..147 1691679071.3026526-CDS-H-elongata_contig102402:0..147 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102402 1..147 - 1622929562.299113-CDS-H-elongata_contig102402:883..1498 1622929562.299113-CDS-H-elongata_contig102402:883..1498 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102402 884..1498 - 1691679071.3256114-CDS-H-elongata_contig102402:883..1498 1691679071.3256114-CDS-H-elongata_contig102402:883..1498 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102402 884..1498 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102402.212.1
>prot_H-elongata_contig102402.212.1 ID=prot_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MQIPTDPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDESDD back to top mRNA from alignment at H-elongata_contig102402:1..1498-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)ATGCAGATCCCGACCGATCCCACGCAGGGTAAGAGCGAAGAGGAGGCCGG
ACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCTTCGCGTGGATGCCCG
CAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAGGATGAGTCGGACGAC
GACAGTCGCGACGGGGACGCCAATGCCACAGGCGACAAAAAAGCGTTGCC
AAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGGAACTTGGTGACGTTA
CATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGGCCTCGACCGCGATCG
TACAACGAAACACTCTTGGCGGACAAAGCCTTCCACAACCCGCAAGCCTC
TGAAACCATGGCCGATGCTTACGGCATCTTGCGCCCAGCGTCTTTTGTGC
TCGACGTTCGGGACGACGATCGGACGTTAGGGGTTGTCGGGTCGGGAAAG
GGGGCGACAGAGGGAAACGACGTGAATGCTGAAGTGCGTGGCGATGGAGG
TGGCAGAGATGATCGTGGCTGGTTCTACGACACAGTGCGAGATCGGCAGA
ACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGAGTCGAGCTTGCCCGA
AAGGGACAACATCAG GTGAGGTCCGCGCTCTCGCCCTCGCCCTAACCCTC
ACCCTATGAACCTGAGTGCCGCTTCTTCGGTCGATTTGACTCATTTGTAG
CAAAACGCTCTTTGTCCGTCCCTGTTTGTATTACGAGCAGCCTCCCCGTG
TGTTGCTTTCTGCTCGACGCTTAAGGGTTATGATCTGATTGGGTGATTCG
CACTTTTGCCCTTCCAGCTATATATATATGATGATACAACTTGGTCAACA
AAATACCTATCAAGTGCCTATCCCGCTAGTGGGGGGATGGGTGGGGGCAA
AGAGGTACGGAGATGAACGGGTCACATCTTAGTGACGTCACACCCCGCTA
AGCACACCACATCCTCGTTGGATCCAACCATCCGATAGCAGCTAAAACGT
GTCACGACAATGCGGTACAAACTTTAAAGCGCGTGTGTCCGATGTCCTGC
TTGTAGTCCATAACCTATACAGACTGTTGTGCGTGGTACAGTATCGGTAG
GCTACACGTAGGCAAGGTGTGCGGCACTCCGCGAGGACCGACTTTGTGTT
GATGTTAAATAGCTGATGCTACGAGGTACGCCAAGAACTTGGTTGGAACG
GTTCTAATTAGGTCCCCATCTGTAAGTTAGGGTGGTCGGGCCTCGGAGCT
ACGTGCGAAGATTACCACCCTTTGCGTGGCTCCCGGCATCGATACCCTGC
CTCCCTCTCCCTACCGATGATTGCCCTTTTGCCACATGGAACGGCACCTA
GGCTGCTGTCGACGTCTACACACAAGCCTTGGGAATGTGCCCGGACCATG
ATGACGGTTTGGTTGCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTA
CGACAAGCAACGCAAGACCTATCGAGAGCGCTCAGCCTCAACCCGCAA back to top Coding sequence (CDS) from alignment at H-elongata_contig102402:1..1498-
>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious) back to top