mRNA_H-elongata_contig102402.212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.290e-80
Identity = 162/309 (52.43%), Postives = 183/309 (59.22%), Query Frame = 1

Query:   16 DPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDEXXXXXRDGDANATGDKKALPKAVRREEDTGVEL----GDVTSSGRCG--------------------------------------------------RKRRRPRPRSYNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDR----TLGVVGSG-KGAT-EGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNPQ 762
            DP  G  EE+AG  V+EH+D WGF+WMPAIE+FVEQA    +          N     ++ P       DT        G  T++ R                                                         PRP SYNETLLADK+FHNP ASETMADA+GILRPASFVLDV +DDR      GV  +G KGAT EG +  A+V    GG +D+ WFYDTVRDRQNRLWAD+RVRKGVELARKGQHQAA+D YTQALGMCPDHDDGLVARGAAFATTGRLRQA QDLSRALS+NPQ
Sbjct:   52 DPPNG-DEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQ---------NXXXXXESSPLGANYRSDTDXXXXXLRGPPTNTSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGE--ADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQ 348

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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13
Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 1

Query:  358 MADAYGILRPASFVLDVRDDDRTLGVVGSGKGATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGL 675
            MA A+ + RP SF +DV  D         G GA                   R WF++ +R+RQ+R WAD+RV KG ELAR GQH AA+  Y QALGMC  H D +
Sbjct:    1 MASAFRVCRPLSFAVDVAAD---------GAGA-------------------RDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78

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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-6
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1

Query:  526 YDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNP 759
            Y  +R +QN  WA+  VRKG+  A    +  A+  Y  AL +  ++ D  VA GAA+A T +  +A +  S+AL + P
Sbjct:    3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQP 80

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FK49_ECTSI	2.290e-80	52.43	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CKS1_9STRA	1.160e-13	42.45	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
L1I460_GUITC	2.250e-6	35.90	Uncharacterized protein (Fragment) n=1 Tax=Guillar...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig102402	contig	H-elongata_contig102402:1..1498 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig102402:1..1498-
coding sequence from alignment at H-elongata_contig102402:1..1498-

protein sequence of mRNA_H-elongata_contig102402.212.1

>prot_H-elongata_contig102402.212.1 ID=prot_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MQIPTDPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDESDD
DSRDGDANATGDKKALPKAVRREEDTGVELGDVTSSGRCGRKRRRPRPRS
YNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDRTLGVVGSGK
GATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELAR
KGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALS
LNPQ

mRNA from alignment at H-elongata_contig102402:1..1498-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)
ATGCAGATCCCGACCGATCCCACGCAGGGTAAGAGCGAAGAGGAGGCCGG
ACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCTTCGCGTGGATGCCCG
CAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAGGATGAGTCGGACGAC
GACAGTCGCGACGGGGACGCCAATGCCACAGGCGACAAAAAAGCGTTGCC
AAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGGAACTTGGTGACGTTA
CATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGGCCTCGACCGCGATCG
TACAACGAAACACTCTTGGCGGACAAAGCCTTCCACAACCCGCAAGCCTC
TGAAACCATGGCCGATGCTTACGGCATCTTGCGCCCAGCGTCTTTTGTGC
TCGACGTTCGGGACGACGATCGGACGTTAGGGGTTGTCGGGTCGGGAAAG
GGGGCGACAGAGGGAAACGACGTGAATGCTGAAGTGCGTGGCGATGGAGG
TGGCAGAGATGATCGTGGCTGGTTCTACGACACAGTGCGAGATCGGCAGA
ACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGAGTCGAGCTTGCCCGA
AAGGGACAACATCAGGTGAGGTCCGCGCTCTCGCCCTCGCCCTAACCCTC
ACCCTATGAACCTGAGTGCCGCTTCTTCGGTCGATTTGACTCATTTGTAG
CAAAACGCTCTTTGTCCGTCCCTGTTTGTATTACGAGCAGCCTCCCCGTG
TGTTGCTTTCTGCTCGACGCTTAAGGGTTATGATCTGATTGGGTGATTCG
CACTTTTGCCCTTCCAGCTATATATATATGATGATACAACTTGGTCAACA
AAATACCTATCAAGTGCCTATCCCGCTAGTGGGGGGATGGGTGGGGGCAA
AGAGGTACGGAGATGAACGGGTCACATCTTAGTGACGTCACACCCCGCTA
AGCACACCACATCCTCGTTGGATCCAACCATCCGATAGCAGCTAAAACGT
GTCACGACAATGCGGTACAAACTTTAAAGCGCGTGTGTCCGATGTCCTGC
TTGTAGTCCATAACCTATACAGACTGTTGTGCGTGGTACAGTATCGGTAG
GCTACACGTAGGCAAGGTGTGCGGCACTCCGCGAGGACCGACTTTGTGTT
GATGTTAAATAGCTGATGCTACGAGGTACGCCAAGAACTTGGTTGGAACG
GTTCTAATTAGGTCCCCATCTGTAAGTTAGGGTGGTCGGGCCTCGGAGCT
ACGTGCGAAGATTACCACCCTTTGCGTGGCTCCCGGCATCGATACCCTGC
CTCCCTCTCCCTACCGATGATTGCCCTTTTGCCACATGGAACGGCACCTA
GGCTGCTGTCGACGTCTACACACAAGCCTTGGGAATGTGCCCGGACCATG
ATGACGGTTTGGTTGCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTA
CGACAAGCAACGCAAGACCTATCGAGAGCGCTCAGCCTCAACCCGCAA

Coding sequence (CDS) from alignment at H-elongata_contig102402:1..1498-

>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)
ATGCAGATCCCGACCGATCCCACGCAGGGTAAGAGCGAAGAGGAGGCCGG
ACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCTTCGCGTGGATGCCCG
CAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAGGATGAGTCGGACGAC
GACAGTCGCGACGGGGACGCCAATGCCACAGGCGACAAAAAAGCGTTGCC
AAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGGAACTTGGTGACGTTA
CATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGGCCTCGACCGCGATCG
TACAACGAAACACTCTTGGCGGACAAAGCCTTCCACAACCCGCAAGCCTC
TGAAACCATGGCCGATGCTTACGGCATCTTGCGCCCAGCGTCTTTTGTGC
TCGACGTTCGGGACGACGATCGGACGTTAGGGGTTGTCGGGTCGGGAAAG
GGGGCGACAGAGGGAAACGACGTGAATGCTGAAGTGCGTGGCGATGGAGG
TGGCAGAGATGATCGTGGCTGGTTCTACGACACAGTGCGAGATCGGCAGA
ACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGAGTCGAGCTTGCCCGA
AAGGGACAACATCAGATGCAGATCCCGACCGATCCCACGCAGGGTAAGAG
CGAAGAGGAGGCCGGACCAGTGGTGCACGAGCACTCCGATGCGTGGGGCT
TCGCGTGGATGCCCGCAATCGAAAACTTCGTTGAACAAGCCGTGTCGGAG
GATGAGTCGGACGACGACAGTCGCGACGGGGACGCCAATGCCACAGGCGA
CAAAAAAGCGTTGCCAAAAGCAGTCCGACGCGAGGAGGATACCGGGGTGG
AACTTGGTGACGTTACATCTTCCGGAAGATGCGGCCGAAAGCGTCGGAGG
CCTCGACCGCGATCGTACAACGAAACACTCTTGGCGGACAAAGCCTTCCA
CAACCCGCAAGCCTCTGAAACCATGGCCGATGCTTACGGCATCTTGCGCC
CAGCGTCTTTTGTGCTCGACGTTCGGGACGACGATCGGACGTTAGGGGTT
GTCGGGTCGGGAAAGGGGGCGACAGAGGGAAACGACGTGAATGCTGAAGT
GCGTGGCGATGGAGGTGGCAGAGATGATCGTGGCTGGTTCTACGACACAG
TGCGAGATCGGCAGAACAGGCTGTGGGCGGATTCGAGGGTCAGAAAGGGA
GTCGAGCTTGCCCGAAAGGGACAACATCAGGCTGCTGTCGACGTCTACAC
ACAAGCCTTGGGAATGTGCCCGGACCATGATGACGGTTTGGTTGCACGAG
GAGCCGCGTTTGCCACGACGGGTCGGTTACGACAAGCAACGCAAGACCTA
TCGAGAGCGCTCAGCCTCAACCCGCAAGCTGCTGTCGACGTCTACACACA
AGCCTTGGGAATGTGCCCGGACCATGATGACGGTTTGGTTGCACGAGGAG
CCGCGTTTGCCACGACGGGTCGGTTACGACAAGCAACGCAAGACCTATCG
AGAGCGCTCAGCCTCAACCCGCAA