Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 216 |
| Cds size | 120 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929561.3258908-UTR-H-elongata_contig10232:5709..5721 | 1622929561.3258908-UTR-H-elongata_contig10232:5709..5721 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10232 5710..5721 - |
| 1691679070.874622-UTR-H-elongata_contig10232:5709..5721 | 1691679070.874622-UTR-H-elongata_contig10232:5709..5721 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10232 5710..5721 - |
| 1622929561.3754148-UTR-H-elongata_contig10232:8364..8448 | 1622929561.3754148-UTR-H-elongata_contig10232:8364..8448 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10232 8365..8448 - |
| 1691679070.9112248-UTR-H-elongata_contig10232:8364..8448 | 1691679070.9112248-UTR-H-elongata_contig10232:8364..8448 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10232 8365..8448 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929561.3432436-CDS-H-elongata_contig10232:5721..5799 | 1622929561.3432436-CDS-H-elongata_contig10232:5721..5799 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10232 5722..5799 - |
| 1691679070.8896792-CDS-H-elongata_contig10232:5721..5799 | 1691679070.8896792-CDS-H-elongata_contig10232:5721..5799 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10232 5722..5799 - |
| 1622929561.3604536-CDS-H-elongata_contig10232:8322..8364 | 1622929561.3604536-CDS-H-elongata_contig10232:8322..8364 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10232 8323..8364 - |
| 1691679070.8996508-CDS-H-elongata_contig10232:8322..8364 | 1691679070.8996508-CDS-H-elongata_contig10232:8322..8364 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10232 8323..8364 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10232.202.1 >prot_H-elongata_contig10232.202.1 ID=prot_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MIELWDAWKDSSVKVAASLADDVNIVGAGINHNFILQPD* back to topmRNA from alignment at H-elongata_contig10232:5710..8448- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2739bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
TATAGGCACCGGTATGCCGCGAGCAAGTTGCAGCTCAGCAGACAGAAGTT
TGACAGGAAGGAGACTGGGAAGAAGAGGCACACCATGATCGAATTGTGGG
ATGCATGGAAGGATTCCTCAGTAAAGGTGAATGAGCTGTTAAATTTCTCG
CCGTTTCGATAAACCACTTTTGTCTTGTTGAGGGCTTAAACCGACATCAT
TACAAAGGGCGACCCTTTGAACTCTATGTAGGTAAACTACGCAATACCGA
ACAAGTTTATATATCCCGCTTCCACCGATTTGTCTTTTTGCTGTTCATGC
GCGTGTTCGCTTTGCACCAATATTGCCCCGACCATTGCACGAACGGACGA
AATGTTGGGGTGGAATACATGTATGCATGGTAGGGCCAGGGTGCTTTTCG
TTCTATTTTTCCGTGTTGTTCATTTTGAGACAACAAAGTGTTGTAGTCTG
TATTTGAGAAACGGTCCTTCCCATCGAAGTTTTCTTGTGTATACCAGTCT
TGTTTTACCCCCAATAATTGCTTTGCCGGAATTTCCCTTTTCTTCCTTTT
TGGTGATCGCCCTCCACACTATAGTGTCCGCCCTATAGTGTTGTCTTCCC
GAAAATACAATCAGAACCCAGAGGCGTTGACAGAGGATATTCTGGCCTGT
TGATGAGAAGCGCGCACATGATATCCCAAATTTTTACCTGTGATGGTACA
TTTCTTGTTGTTGTTGTTGTTGGTCACACATTTAGCAAAAGATCAACCGG
ATTTGGTTGCCTTCTTCTCTTGGTCAGATGAACAGGAAAAACAATTTTCC
CCCGTCCCACGTGGAAGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGC
AGTCCCGTCCCGCGTCAGCCTGCTCATTCTCCCAACCCAGGCTGAATACG
GTCCTTGCTCCCGGTATCCTCTCGATTCTCCCGTTTTCCGCGAAAGTGTC
CATTTCTAACGTCAACCGCCATCGGACCAATCCCGATTTCATCACGTCAC
CACGCAATTGCGTACCGATGGCGTTTACCACCGAGAGTCCACCGACACTG
AGCCAGCAAACCTCAAGGTAGCCCGAGTAACGGGTGAAGCCTATTCAGGG
AACCCCATGGACCAATTATTGTACGCTTCTATTTTCCCACACACACTATG
GGTAGAGTGGGCATGACGGTTGCTTGAAAGACGCACATGTTTTTTTTAAG
CGTCTTCAACGCAGGGAAGCGCCTTTAAGGTTTCAGGGGGCGATTTCTCA
TTATCCCCGGGGTCAATGGAGGCATGTTGTACGTCAAACGATGCGTCTTA
GCGAGGCGAGTGGTAGCGCGAAAGGGAATAAAACATAAGGCGGTGGGTAA
GCCGGGATACCTTCTTCAAAGCAACAAGTGTTTTTGTACAACAGTAGTAG
TATGTACGTATGCTATAAAAATGCTCTACCCCTTCCATAAACCATGAATA
GTTGCCTGCACTTACTCCTGCTCCTTCCCTCTACGCTTGACTTGAATCTT
ATGAATGAACGAATGCAAAGGTTTCGAAAGAAGGTAATGTGCTTCGCTGT
ACTCGCCTTCCCTTCCCTTCGCATACAAATAGGAGCGAATTGCCTCAAAA
CTTGAGTGGACCTCAGCCTCTTCGATCGACGATGTTATTATTAAAACCCA
TATGAACTCATTAGAACTCTCCGAACATCCACGCCTCCTTAACATCTCGC
GAGGTGTAATCCAGGGGACCGACTATCGTCAATTTCGAAAGTGGACATTT
TTACTACATTTAAGCACAAAATCGTCATATATGTGATTATTCATTATATG
GGGACGCCAAATCGGAGCCTAGGGGATGAACTGTGTGTGGTGGTTAGGAA
GGGTTAGGTACAGCATTGTTTAAAGCTTCTGGAAGCATATTAGACTAACC
TAGAGGGTATCTTTCAGTAGCAACATTTTTAGTGCACGACTCTGGCTTAC
CGCCGCCTCCTTCCCCTTCGCTTGATAAATTAGCGTCCACTTCCACGGTA
CTGCTGAGACTGTCGGTCTTGTCCCCAGGTGTGATATTTTGGCAGGCTGT
ACACTCTCTCTGCTGACCATAGCCTTCCTCCCCAATGCCGCGACAGCAAA
AACCGTGTAACCACTGCCCGCACGGGCACTGGTCCACGGGACCGACAGGC
CCTGGTGGCGTGCATATAGGTTCTTCGCATCTCTTCGTACCAGACGCCGA
TGACGCACCTGTAGTTGGAAGAAATCTTCTCATATTGCACCCGCAGCTGC
CGCAACAGAAATATAGCTGTTCTCTCTGTGGGCAGGGGTCTACCCGCTTG
TCTCTCAAGGGGGGACGCAGAATAAAAAGACCCCCCCCCCCTATATTTAT
ATTTAAAACCCTTGAATTCATTAGAACCCTTCGAACATCCACGCCTTTAA
CCTCTAGGGAACCCGATTTGTTTTTTCCATACTAAATATATAACAAAACT
TGAAATCCAGTTTCAAAAGGGTTAAAGCGGGGGCGACTATTTGTTTGTGC
CCTTTCTGGTGCCGCGACAATTGGAGACAACCGCGAATACAGACCTAGTG
TACTAGCTGTAGTGCTATGTGATAAGTATTGTACAGATAAAGCCAAAGTT
GAAGATCATTTTGACTGACCAAGTTCGTGAATTTTTGTTACTGGTATAGG
TGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGGTGCGGGCATCAAC
CACAACTTCATCCTACAGCCTGACTGATCATTCGATAAG back to topCoding sequence (CDS) from alignment at H-elongata_contig10232:5710..8448- >mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
ATGATCGAATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGATGATCGA
ATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGGTGGCCGCGAGTCTTG
CAGACGACGTGAACATCGTTGGTGCGGGCATCAACCACAACTTCATCCTA
CAGCCTGACTGAGTGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGG
TGCGGGCATCAACCACAACTTCATCCTACAGCCTGACTGA back to top
|