mRNA_H-elongata_contig10232.202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Model size	216
Cds size	120
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10232.202.1	prot_H-elongata_contig10232.202.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig10232 5722..8364 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929561.3258908-UTR-H-elongata_contig10232:5709..5721	1622929561.3258908-UTR-H-elongata_contig10232:5709..5721	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10232 5710..5721 -
1691679070.874622-UTR-H-elongata_contig10232:5709..5721	1691679070.874622-UTR-H-elongata_contig10232:5709..5721	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10232 5710..5721 -
1622929561.3754148-UTR-H-elongata_contig10232:8364..8448	1622929561.3754148-UTR-H-elongata_contig10232:8364..8448	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10232 8365..8448 -
1691679070.9112248-UTR-H-elongata_contig10232:8364..8448	1691679070.9112248-UTR-H-elongata_contig10232:8364..8448	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10232 8365..8448 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929561.3432436-CDS-H-elongata_contig10232:5721..5799	1622929561.3432436-CDS-H-elongata_contig10232:5721..5799	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10232 5722..5799 -
1691679070.8896792-CDS-H-elongata_contig10232:5721..5799	1691679070.8896792-CDS-H-elongata_contig10232:5721..5799	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10232 5722..5799 -
1622929561.3604536-CDS-H-elongata_contig10232:8322..8364	1622929561.3604536-CDS-H-elongata_contig10232:8322..8364	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10232 8323..8364 -
1691679070.8996508-CDS-H-elongata_contig10232:8322..8364	1691679070.8996508-CDS-H-elongata_contig10232:8322..8364	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10232 8323..8364 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10232:5710..8448-
coding sequence from alignment at H-elongata_contig10232:5710..8448-

protein sequence of mRNA_H-elongata_contig10232.202.1

>prot_H-elongata_contig10232.202.1 ID=prot_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MIELWDAWKDSSVKVAASLADDVNIVGAGINHNFILQPD*

mRNA from alignment at H-elongata_contig10232:5710..8448-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2739bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
TATAGGCACCGGTATGCCGCGAGCAAGTTGCAGCTCAGCAGACAGAAGTT
TGACAGGAAGGAGACTGGGAAGAAGAGGCACACCATGATCGAATTGTGGG
ATGCATGGAAGGATTCCTCAGTAAAGGTGAATGAGCTGTTAAATTTCTCG
CCGTTTCGATAAACCACTTTTGTCTTGTTGAGGGCTTAAACCGACATCAT
TACAAAGGGCGACCCTTTGAACTCTATGTAGGTAAACTACGCAATACCGA
ACAAGTTTATATATCCCGCTTCCACCGATTTGTCTTTTTGCTGTTCATGC
GCGTGTTCGCTTTGCACCAATATTGCCCCGACCATTGCACGAACGGACGA
AATGTTGGGGTGGAATACATGTATGCATGGTAGGGCCAGGGTGCTTTTCG
TTCTATTTTTCCGTGTTGTTCATTTTGAGACAACAAAGTGTTGTAGTCTG
TATTTGAGAAACGGTCCTTCCCATCGAAGTTTTCTTGTGTATACCAGTCT
TGTTTTACCCCCAATAATTGCTTTGCCGGAATTTCCCTTTTCTTCCTTTT
TGGTGATCGCCCTCCACACTATAGTGTCCGCCCTATAGTGTTGTCTTCCC
GAAAATACAATCAGAACCCAGAGGCGTTGACAGAGGATATTCTGGCCTGT
TGATGAGAAGCGCGCACATGATATCCCAAATTTTTACCTGTGATGGTACA
TTTCTTGTTGTTGTTGTTGTTGGTCACACATTTAGCAAAAGATCAACCGG
ATTTGGTTGCCTTCTTCTCTTGGTCAGATGAACAGGAAAAACAATTTTCC
CCCGTCCCACGTGGAAGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGC
AGTCCCGTCCCGCGTCAGCCTGCTCATTCTCCCAACCCAGGCTGAATACG
GTCCTTGCTCCCGGTATCCTCTCGATTCTCCCGTTTTCCGCGAAAGTGTC
CATTTCTAACGTCAACCGCCATCGGACCAATCCCGATTTCATCACGTCAC
CACGCAATTGCGTACCGATGGCGTTTACCACCGAGAGTCCACCGACACTG
AGCCAGCAAACCTCAAGGTAGCCCGAGTAACGGGTGAAGCCTATTCAGGG
AACCCCATGGACCAATTATTGTACGCTTCTATTTTCCCACACACACTATG
GGTAGAGTGGGCATGACGGTTGCTTGAAAGACGCACATGTTTTTTTTAAG
CGTCTTCAACGCAGGGAAGCGCCTTTAAGGTTTCAGGGGGCGATTTCTCA
TTATCCCCGGGGTCAATGGAGGCATGTTGTACGTCAAACGATGCGTCTTA
GCGAGGCGAGTGGTAGCGCGAAAGGGAATAAAACATAAGGCGGTGGGTAA
GCCGGGATACCTTCTTCAAAGCAACAAGTGTTTTTGTACAACAGTAGTAG
TATGTACGTATGCTATAAAAATGCTCTACCCCTTCCATAAACCATGAATA
GTTGCCTGCACTTACTCCTGCTCCTTCCCTCTACGCTTGACTTGAATCTT
ATGAATGAACGAATGCAAAGGTTTCGAAAGAAGGTAATGTGCTTCGCTGT
ACTCGCCTTCCCTTCCCTTCGCATACAAATAGGAGCGAATTGCCTCAAAA
CTTGAGTGGACCTCAGCCTCTTCGATCGACGATGTTATTATTAAAACCCA
TATGAACTCATTAGAACTCTCCGAACATCCACGCCTCCTTAACATCTCGC
GAGGTGTAATCCAGGGGACCGACTATCGTCAATTTCGAAAGTGGACATTT
TTACTACATTTAAGCACAAAATCGTCATATATGTGATTATTCATTATATG
GGGACGCCAAATCGGAGCCTAGGGGATGAACTGTGTGTGGTGGTTAGGAA
GGGTTAGGTACAGCATTGTTTAAAGCTTCTGGAAGCATATTAGACTAACC
TAGAGGGTATCTTTCAGTAGCAACATTTTTAGTGCACGACTCTGGCTTAC
CGCCGCCTCCTTCCCCTTCGCTTGATAAATTAGCGTCCACTTCCACGGTA
CTGCTGAGACTGTCGGTCTTGTCCCCAGGTGTGATATTTTGGCAGGCTGT
ACACTCTCTCTGCTGACCATAGCCTTCCTCCCCAATGCCGCGACAGCAAA
AACCGTGTAACCACTGCCCGCACGGGCACTGGTCCACGGGACCGACAGGC
CCTGGTGGCGTGCATATAGGTTCTTCGCATCTCTTCGTACCAGACGCCGA
TGACGCACCTGTAGTTGGAAGAAATCTTCTCATATTGCACCCGCAGCTGC
CGCAACAGAAATATAGCTGTTCTCTCTGTGGGCAGGGGTCTACCCGCTTG
TCTCTCAAGGGGGGACGCAGAATAAAAAGACCCCCCCCCCCTATATTTAT
ATTTAAAACCCTTGAATTCATTAGAACCCTTCGAACATCCACGCCTTTAA
CCTCTAGGGAACCCGATTTGTTTTTTCCATACTAAATATATAACAAAACT
TGAAATCCAGTTTCAAAAGGGTTAAAGCGGGGGCGACTATTTGTTTGTGC
CCTTTCTGGTGCCGCGACAATTGGAGACAACCGCGAATACAGACCTAGTG
TACTAGCTGTAGTGCTATGTGATAAGTATTGTACAGATAAAGCCAAAGTT
GAAGATCATTTTGACTGACCAAGTTCGTGAATTTTTGTTACTGGTATAGG
TGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGGTGCGGGCATCAAC
CACAACTTCATCCTACAGCCTGACTGATCATTCGATAAG

Coding sequence (CDS) from alignment at H-elongata_contig10232:5710..8448-

>mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
ATGATCGAATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGATGATCGA
ATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGGTGGCCGCGAGTCTTG
CAGACGACGTGAACATCGTTGGTGCGGGCATCAACCACAACTTCATCCTA
CAGCCTGACTGAGTGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGG
TGCGGGCATCAACCACAACTTCATCCTACAGCCTGACTGA

mRNA_H-elongata_contig10232.202.1 (mRNA) Himanthalia elongata Himel1 dioecious

ZOOM

x 1

POSITION

0