mRNA_H-elongata_contig102278.200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102278.200.1
Unique NamemRNA_H-elongata_contig102278.200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A6H5KVF1_9PHAE (Magnesium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVF1_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.860e-67
Identity = 115/151 (76.16%), Postives = 127/151 (84.11%), Query Frame = 1 
Query:    1 APSLPETLPAGPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLFPTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
            AP L E LPAGPVNPSSR VPVLRLSS G AVET LSRQQLAA+L+CPLRDLR+ADPTFPGQFPSVLAR  SI+FSV +VKAVI SNE+LLFPT P+VLS+V AVQEK     +G+  VPFE T +ECCLKHVC+DLLES RNVEPRLR V
Sbjct:  129 APLLQEGLPAGPVNPSSRSVPVLRLSSDGAAVETALSRQQLAAKLNCPLRDLRMADPTFPGQFPSVLARRGSIIFSVGEVKAVILSNEVLLFPTKPDVLSIVPAVQEKIK---LGINAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTV 276
[Close]
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A835ZID1_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.130e-16
Identity = 40/104 (38.46%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  145 LRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-PTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
            +RDLR+ DP+FPGQ+P+VL+R ++I+ S  +++AVI ++E+ L  P+  E +++  AV+++     M     PFEH A+ECCL  +C      ++ + P LR+V
Sbjct:    1 MRDLRLMDPSFPGQYPAVLSRKNAILVSASNIRAVITASEVYLGNPSHKEAIAIAEAVRQQLMTSNM-----PFEHIALECCLSQICASQSAQLQVLRPYLRQV 99
[Close]
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A4D9D8F3_9STRA (Magnesium transporter n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.610e-13
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:   43 PSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
            P  R + V+ + + GT  +  + + +LA EL CP RDLR+ D +FP    + LAR ++IV  +  ++ VIR +EL+LF           P   + L+ V A+    G         PFE  ++E  L  VC  + E ++ V P++ ++
Sbjct:  248 PKPRYLDVVSICANGTLTQRQVRKSELAVELRCPTRDLRILDTSFPSSVATFLARKNAIVVRMDRIRCVIRRDELMLFDPYNQGARGLIPLLQQQLATVAALTSAAGKNAPA-SLSPFELLSLEAVLASVCHQVHERLQVVSPQIMRI 394
[Close]
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: I4YA90_WALMC (Magnesium transporter n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4YA90_WALMC)

HSP 1 Score: 52.8 bits (125), Expect = 3.540e-5
Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1 
Query:    4 PSLPETLPA--GPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVL-SVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKH 396
            PSLP+   +   P   S+ K+ +  L S   +     +R Q+      P RDLRV D       PS+L R S IV++ + V+A++RS+ LL+            P T E++ +++ +++ +  +        PFE  A+E  L H
Sbjct:   21 PSLPQLSSSEDSPRKTSTLKLVLYSLPSLQPSELPNSTRTQICKSASIPYRDLRVLDSPLSDDEPSILIRDSCIVYAGEGVRAIVRSDRLLVVRGENDVGIGHNPATIEIIHTILLSLENRLTSNDFTKRTYPFEFNALETLLMH 165
[Close]
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A4T0RTX6_9BASI (Magnesium transporter n=3 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4T0RTX6_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.880e-5
Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1 
Query:    4 PSLPETLPA--GPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVL-SVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKH 396
            PSLP+   +   P   S+ K+ +  L S   +     +R Q+      P RDLRV D       PS+L R S IV++ + V+A++RS+ LL+            P T E++ +++ +++ +  +        PFE  A+E  L H
Sbjct:   21 PSLPQLSSSEDSPRKTSTLKLVLYSLPSLQPSELPNSTRTQICKSASIPYRDLRVLDSPLSDDEPSILIRDSCIVYAGEGVRAIVRSDRLLVVRGENDVGIGHNPATIEIIHTILLSLENRLTSNDFTKRTYPFEFNALETLLMH 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVF1_9PHAE5.860e-6776.16Magnesium transporter n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZID1_9STRA9.130e-1638.46Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
A0A4D9D8F3_9STRA3.610e-1330.41Magnesium transporter n=1 Tax=Nannochloropsis sali... [more]
I4YA90_WALMC3.540e-528.28Magnesium transporter n=1 Tax=Wallemia mellicola (... [more]
A0A4T0RTX6_9BASI3.880e-528.28Magnesium transporter n=3 Tax=Wallemia mellicola T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102278contigH-elongata_contig102278:385..1673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.7e-55
Seed eggNOG ortholog2880.D8LBW7
Preferred nameMRS2
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2662@1,KOG2662@2759
Ec32 ortholog descriptionsimilar to putative mitochondrial rna splicing protein OR magnesium ion transporter Mrs2
Ec32 orthologEc-20_003550.1
EC2.7.11.1,3.1.1.17
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102278.200.1prot_H-elongata_contig102278.200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102278 385..1673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.083332-CDS-H-elongata_contig102278:384..5131622929561.083332-CDS-H-elongata_contig102278:384..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 385..513 -
1691679070.774736-CDS-H-elongata_contig102278:384..5131691679070.774736-CDS-H-elongata_contig102278:384..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 385..513 -
1622929561.0977862-CDS-H-elongata_contig102278:825..9061622929561.0977862-CDS-H-elongata_contig102278:825..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 826..906 -
1691679070.7874408-CDS-H-elongata_contig102278:825..9061691679070.7874408-CDS-H-elongata_contig102278:825..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 826..906 -
1622929561.1124082-CDS-H-elongata_contig102278:1075..12131622929561.1124082-CDS-H-elongata_contig102278:1075..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 1076..1213 -
1691679070.797917-CDS-H-elongata_contig102278:1075..12131691679070.797917-CDS-H-elongata_contig102278:1075..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 1076..1213 -
1622929561.1384292-CDS-H-elongata_contig102278:1568..16731622929561.1384292-CDS-H-elongata_contig102278:1568..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 1569..1673 -
1691679070.805502-CDS-H-elongata_contig102278:1568..16731691679070.805502-CDS-H-elongata_contig102278:1568..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102278 1569..1673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102278.200.1

>prot_H-elongata_contig102278.200.1 ID=prot_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
APSLPETLPAGPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLR
DLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLFPTTPEVLS
VVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRK
V
back to top

mRNA from alignment at H-elongata_contig102278:385..1673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102278.200.1 ID=mRNA_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1289bp|location=Sequence derived from alignment at H-elongata_contig102278:385..1673- (Himanthalia elongata Himel1 dioecious)
GCCCCGTCGTTGCCCGAGACCTTGCCCGCGGGCCCGGTGAATCCGTCTTC
CAGAAAAGTGCCGGTGCTGAGGCTAAGCTCGACTGGAACTGCGGTAGAGA
CGACGGTAAGCGCTGAAAGAAACACACACGTACAAGACTAGCGGAACGGT
CCTGAGACGTGCGAAAGAAGGGGGGATGGGGGGGGGGGGGGAGCCAGGCG
ATAGTTATCGTGTCGTAATGGATCCACGTTTATGCGAGTCTTGAGCAAGC
AAGATCGCTGTCTAGACTGCAACGAGTTTTGGGAGAGCTTGATCCGGACG
AATGCTACTCTGCCGGGGTTGTTTTTGCAGCCCCCACGGAGGCATCTCGC
TCAAGGGGGATTTTTAGGGTAATGTAACCGAGAAACGATGCGATCCGCAA
TCTGAGGGTGACGCGCGCATCGTGATCCTGTTATACCACCGCACGCAACG
ATACACGCAGCTCTCGAGGCAGCAGCTGGCGGCGGAGTTGGACTGCCCGT
TGAGGGACCTTCGGGTCGCGGATCCCACCTTCCCAGGACAGTTTCCTTCG
GTTCTCGCGCGATGTAGCTCCATTGTTTTCTCGGTCAAGGACGTCAAGGT
ACGACACGCTCTCGCTTCTCTCCTTGCGTCCCCCGTCCAACGTGCGCGCG
TGATGGGCCACATGGGGAGGGGGCTCTTGTGGCCCTTTATTTCACGTGAC
CAGCCGTCTTCCGCTGAAATATCTCGATTTTGCGCCCCGCGTACGCACTC
TCGCGCGCACGCCACAGGCTGTGATCCGATCGAACGAGCTTCTCCTGTTT
CCGACGACGCCAGAAGTCTTGTCCGTGGTAACGGCGGTCCAAGAAAAGGT
GGGACACGACGCCCATCAGGGCGCTTCGTCGTCGACTGAACGGTCGTGTA
GAGCGTGTGTTTACCGTTTCATCAAGTTACGAGGAGAGGGGGGATGGTCT
AACCGTGCCGTGGCGAGGATGTTCCTCGCAGATCTGGCATCGACTTGAGA
GACGTATGTCCAAAATTGGTACCTACACTTGTACATCCAGACGTTTTTTG
TTTTCCCCCACGACCACTTCAAAGGTTTGCTCACGATCGCTGCCTCTTTG
CTCATAGTCTTTGTCTACGGACTCACACAATCGCTCCGCGGGGGGGTGTT
GCAGGTACAGAGAGGCGCGGGCGGGATGGGACTCGGATGTGTTCCGTTTG
AGCATACGGCGGTAGAGTGCTGCCTGAAGCACGTTTGCGAAGACCTTCTC
GAGAGCGTTCGCAACGTGGAGCCAAGGCTAAGGAAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102278:385..1673-

>mRNA_H-elongata_contig102278.200.1 ID=mRNA_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig102278:385..1673- (Himanthalia elongata Himel1 dioecious)
GCCCCGTCGTTGCCCGAGACCTTGCCCGCGGGCCCGGTGAATCCGTCTTC
CAGAAAAGTGCCGGTGCTGAGGCTAAGCTCGACTGGAACTGCGGTAGAGA
CGACGGCCCCGTCGTTGCCCGAGACCTTGCCCGCGGGCCCGGTGAATCCG
TCTTCCAGAAAAGTGCCGGTGCTGAGGCTAAGCTCGACTGGAACTGCGGT
AGAGACGACGCTCTCGAGGCAGCAGCTGGCGGCGGAGTTGGACTGCCCGT
TGAGGGACCTTCGGGTCGCGGATCCCACCTTCCCAGGACAGTTTCCTTCG
GTTCTCGCGCGATGTAGCTCCATTGTTTTCTCGGTCAAGGACGTCAAGCT
CTCGAGGCAGCAGCTGGCGGCGGAGTTGGACTGCCCGTTGAGGGACCTTC
GGGTCGCGGATCCCACCTTCCCAGGACAGTTTCCTTCGGTTCTCGCGCGA
TGTAGCTCCATTGTTTTCTCGGTCAAGGACGTCAAGGCTGTGATCCGATC
GAACGAGCTTCTCCTGTTTCCGACGACGCCAGAAGTCTTGTCCGTGGTAA
CGGCGGTCCAAGAAAAGGCTGTGATCCGATCGAACGAGCTTCTCCTGTTT
CCGACGACGCCAGAAGTCTTGTCCGTGGTAACGGCGGTCCAAGAAAAGAG
AGGCGCGGGCGGGATGGGACTCGGATGTGTTCCGTTTGAGCATACGGCGG
TAGAGTGCTGCCTGAAGCACGTTTGCGAAGACCTTCTCGAGAGCGTTCGC
AACGTGGAGCCAAGGCTAAGGAAGGTGAGAGGCGCGGGCGGGATGGGACT
CGGATGTGTTCCGTTTGAGCATACGGCGGTAGAGTGCTGCCTGAAGCACG
TTTGCGAAGACCTTCTCGAGAGCGTTCGCAACGTGGAGCCAAGGCTAAGG
AAGGTG
back to top