mRNA_H-elongata_contig102278.200.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A6H5KVF1_9PHAE (Magnesium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVF1_9PHAE) HSP 1 Score: 219 bits (557), Expect = 5.860e-67 Identity = 115/151 (76.16%), Postives = 127/151 (84.11%), Query Frame = 1 Query: 1 APSLPETLPAGPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLFPTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
AP L E LPAGPVNPSSR VPVLRLSS G AVET LSRQQLAA+L+CPLRDLR+ADPTFPGQFPSVLAR SI+FSV +VKAVI SNE+LLFPT P+VLS+V AVQEK +G+ VPFE T +ECCLKHVC+DLLES RNVEPRLR V
Sbjct: 129 APLLQEGLPAGPVNPSSRSVPVLRLSSDGAAVETALSRQQLAAKLNCPLRDLRMADPTFPGQFPSVLARRGSIIFSVGEVKAVILSNEVLLFPTKPDVLSIVPAVQEKIK---LGINAVPFEQTVMECCLKHVCKDLLESARNVEPRLRTV 276
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A835ZID1_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID1_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.130e-16 Identity = 40/104 (38.46%), Postives = 68/104 (65.38%), Query Frame = 1 Query: 145 LRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-PTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
+RDLR+ DP+FPGQ+P+VL+R ++I+ S +++AVI ++E+ L P+ E +++ AV+++ M PFEH A+ECCL +C ++ + P LR+V
Sbjct: 1 MRDLRLMDPSFPGQYPAVLSRKNAILVSASNIRAVITASEVYLGNPSHKEAIAIAEAVRQQLMTSNM-----PFEHIALECCLSQICASQSAQLQVLRPYLRQV 99
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A4D9D8F3_9STRA (Magnesium transporter n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F3_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.610e-13 Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 1 Query: 43 PSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVLSVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKHVCEDLLESVRNVEPRLRKV 453
P R + V+ + + GT + + + +LA EL CP RDLR+ D +FP + LAR ++IV + ++ VIR +EL+LF P + L+ V A+ G PFE ++E L VC + E ++ V P++ ++
Sbjct: 248 PKPRYLDVVSICANGTLTQRQVRKSELAVELRCPTRDLRILDTSFPSSVATFLARKNAIVVRMDRIRCVIRRDELMLFDPYNQGARGLIPLLQQQLATVAALTSAAGKNAPA-SLSPFELLSLEAVLASVCHQVHERLQVVSPQIMRI 394
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: I4YA90_WALMC (Magnesium transporter n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4YA90_WALMC) HSP 1 Score: 52.8 bits (125), Expect = 3.540e-5 Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 4 PSLPETLPA--GPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVL-SVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKH 396
PSLP+ + P S+ K+ + L S + +R Q+ P RDLRV D PS+L R S IV++ + V+A++RS+ LL+ P T E++ +++ +++ + + PFE A+E L H
Sbjct: 21 PSLPQLSSSEDSPRKTSTLKLVLYSLPSLQPSELPNSTRTQICKSASIPYRDLRVLDSPLSDDEPSILIRDSCIVYAGEGVRAIVRSDRLLVVRGENDVGIGHNPATIEIIHTILLSLENRLTSNDFTKRTYPFEFNALETLLMH 165
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Match: A0A4T0RTX6_9BASI (Magnesium transporter n=3 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4T0RTX6_9BASI) HSP 1 Score: 52.8 bits (125), Expect = 3.880e-5 Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 4 PSLPETLPA--GPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRDLRVADPTFPGQFPSVLARCSSIVFSVKDVKAVIRSNELLLF-----------PTTPEVL-SVVTAVQEKRGAGGMGLGCVPFEHTAVECCLKH 396
PSLP+ + P S+ K+ + L S + +R Q+ P RDLRV D PS+L R S IV++ + V+A++RS+ LL+ P T E++ +++ +++ + + PFE A+E L H
Sbjct: 21 PSLPQLSSSEDSPRKTSTLKLVLYSLPSLQPSELPNSTRTQICKSASIPYRDLRVLDSPLSDDEPSILIRDSCIVYAGEGVRAIVRSDRLLVVRGENDVGIGHNPATIEIIHTILLSLENRLTSNDFTKRTYPFEFNALETLLMH 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102278.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102278.200.1 >prot_H-elongata_contig102278.200.1 ID=prot_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp APSLPETLPAGPVNPSSRKVPVLRLSSTGTAVETTLSRQQLAAELDCPLRback to top mRNA from alignment at H-elongata_contig102278:385..1673- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102278.200.1 ID=mRNA_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1289bp|location=Sequence derived from alignment at H-elongata_contig102278:385..1673- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102278:385..1673- >mRNA_H-elongata_contig102278.200.1 ID=mRNA_H-elongata_contig102278.200.1|Name=mRNA_H-elongata_contig102278.200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig102278:385..1673- (Himanthalia elongata Himel1 dioecious)back to top |