mRNA_H-elongata_contig10217.195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10217.195.1
Unique NamemRNA_H-elongata_contig10217.195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.790e-44
Identity = 99/229 (43.23%), Postives = 131/229 (57.21%), Query Frame = 1
Query:    1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRS---------------RCFTARKPISRTF--AKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630
            PF L + D +GPFTP A+GG+KY +K  D++T W  V L+  K  ++ +L+LF   TVIP    I   RA KG E+T   +RQYCL+ GI   F + NTP Q+G  ER GR +  +VRCMLADS  PS +W EL  T   L  RT H+     +               R   AR  +       KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIET P
Sbjct:  632 PFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTP 860          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.800e-44
Identity = 99/233 (42.49%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRSRCFTARKPISRTFA---------------------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630
            PF L + D +GPFTP A+GG+KY +K  D++T W  V L+  K  ++ +L+LF   TVIP    I   RA KG E+T   +RQYCL+ GI   F + NTP Q+G  ER GR +  +VRCMLADS  PS +W EL  T   L  RT H+         T  K +  T A                     KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIE  P
Sbjct:  632 PFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNG----TPNKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVMFIEPTP 860          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.830e-41
Identity = 89/221 (40.27%), Postives = 124/221 (56.11%), Query Frame = 1
Query:   16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621
            Y DL+GP +P A GGY YVSK TDEY+    VYL+ +KD+A+ +L  F+   VIP G  +   R+  GGEYT + +R +C   GI+Q F A  TPQQ G+ ER GR +  +VRC++     P  +W EL  TT  +  R  H      +   R F  +  +       S  F  LE   S+       G + GY+ + ++YRV+NP+T+R+V SRNVTFIE
Sbjct:   50 YTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIE 270          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 9.240e-38
Identity = 86/221 (38.91%), Postives = 121/221 (54.75%), Query Frame = 1
Query:   16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621
            Y DL+GP +P A GG+ YVSK TDEY+    VYL+ TKD+A+ +L+ F+   VIP G  +   R+  GGEYT + + ++C   GI+Q F A  TPQQ G+ ER GR +  +VRC+L     P  +W EL  T   +  R  H      +   R F  +  +       S  F  +E   S+       G + GY+    +YR++NP T+R+V SRNVTFIE
Sbjct:  532 YTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIE 752          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.660e-37
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR 432
            PF L   DLMGPF+P A+GG+ Y+ K  D++  W  V+L+  K   + +LQLF  S + P    + C RA KGGEYT   F +YC + GI   F + NTPQ++G  ER+GR +  MVRC+LADSG P  +WEELFMT + L  R
Sbjct:  325 PFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNR 468          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.670e-37
Identity = 87/230 (37.83%), Postives = 120/230 (52.17%), Query Frame = 1
Query:   16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVF-ERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCF----------------------TARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621
            Y DL+GP +P A GGY YVSK TDEY+    VYL+ +KD+A+ +L  F+   VIP G  +   R   GGEY+ + +R +C   GI+Q F    TPQQ G+  ER GR +  +VRC++     P  +W EL  TT  +  R  H      +   R F                      TA   +    +KL   A  G + GY+ + ++YRV+NP T+R+V SRNVTFIE
Sbjct:   36 YTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQQNGIISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRXXXXXXXRVIGSTASVHLETYKSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIE 265          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.280e-37
Identity = 85/212 (40.09%), Postives = 117/212 (55.19%), Query Frame = 1
Query:   22 DLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRR--------------------SRCFTARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRV 591
            D +GPFTP A+GG+KY +K  D+ T W  + L+  K  ++ SL LF   TV+P G  I C R  +G E+T  +FRQYC + GI   F + NTPQQ+G  ER GR +  +VRC+LADS  P+ +W EL  T   L  R  H+  +                      SR F   +  +R   KLE  A EG++ GY+ + KSYR++N +TRRV
Sbjct:  534 DTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDKTCSVDSLALFNKGTVVPTGERIYCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTR---KLEHRAWEGRLVGYSMDSKSYRIYNSETRRV 742          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 5.750e-36
Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630
            D MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.810e-36
Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630
            D MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.880e-36
Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630
            D MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.790e-4443.23Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE8.800e-4442.49Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KCZ9_9PHAE9.830e-4140.27Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KY84_9PHAE9.240e-3838.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE1.660e-3747.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFB1_9PHAE1.670e-3737.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE4.280e-3740.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE5.750e-3640.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE6.810e-3640.71Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE6.880e-3640.71Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10217contigH-elongata_contig10217:8532..9202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score109.8
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog7213.XP_004531694.1
KEGG koko:K16680
KEGG Pathwayko04391,map04391
GOsGO:0001654,GO:0001736,GO:0001738,GO:0001745,GO:0002009,GO:0003002,GO:0007163,GO:0007164,GO:0007275,GO:0007389,GO:0007423,GO:0008150,GO:0008365,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0016318,GO:0032501,GO:0032502,GO:0035017,GO:0035018,GO:0040003,GO:0042067,GO:0042335,GO:0048513,GO:0048592,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0060429,GO:0090596
EggNOG free text desc.Immunoglobulin like
EggNOG OGs38F8P@33154,3BN19@33208,3D374@33213,3SG6P@50557,41Y36@6656,44ZNF@7147,COG2801@1,KOG0017@2759,KOG3515@1,KOG3515@2759
COG Functional cat.T
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10217.195.1prot_H-elongata_contig10217.195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10217 8559..9202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.7553754-UTR-H-elongata_contig10217:8531..85581622929560.7553754-UTR-H-elongata_contig10217:8531..8558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10217 8532..8558 +
1691679070.6316848-UTR-H-elongata_contig10217:8531..85581691679070.6316848-UTR-H-elongata_contig10217:8531..8558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10217 8532..8558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.7658424-CDS-H-elongata_contig10217:8558..90281622929560.7658424-CDS-H-elongata_contig10217:8558..9028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10217 8559..9028 +
1691679070.6501672-CDS-H-elongata_contig10217:8558..90281691679070.6501672-CDS-H-elongata_contig10217:8558..9028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10217 8559..9028 +
1622929560.7749174-CDS-H-elongata_contig10217:9069..92021622929560.7749174-CDS-H-elongata_contig10217:9069..9202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10217 9070..9202 +
1691679070.6603348-CDS-H-elongata_contig10217:9069..92021691679070.6603348-CDS-H-elongata_contig10217:9069..9202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10217 9070..9202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10217.195.1

>prot_H-elongata_contig10217.195.1 ID=prot_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVI
PFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERV
GRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTRHSRWRRRSRCFTARK
PISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETP
P
back to top

mRNA from alignment at H-elongata_contig10217:8532..9202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10217.195.1 ID=mRNA_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig10217:8532..9202+ (Himanthalia elongata Himel1 dioecious)
CCTTTCCTGTTGTGCTACGGAGACCTGATGGGGCCCTTCACGCCTGCGGC CATAGGTGGCTACAAGTACGTCAGCAAAATAACCGACGAGTACACAAATT GGACCGCCGTCTACTTGTTAACTACTAAGGACCAAGCTCTTCAGTCGCTT CAACTGTTCGTCGGCTCAACAGTCATTCCCTTCGGTGGCTACATCGTTTG TTGGCGCGCCGGCAAGGGCGGCGAGTACACCGGGGATAAGTTCCGGCAGT ACTGCTTGGAGACCGGTATTATCCAAACGTTCAACGCAAACAACACGCCA CAGCAAATGGGTGTGTTCGAACGAGTGGGGAGGAATATGTGCGCGATGGT TCGGTGCATGCTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGAGGAGC TGTTCATGACAACAACAGGACTCCGCACAAGGCACTCAAGATGGAGACGC CGTTCAAGATGCTTCACGGCGAGGAAGCCGATCTCTCGCACGTTCGCGTT ATCGGAGCCAGAACCTACGTGCACATCAAGGACTCCAGAAAGCTTGAAGC TGCGGCTTCGGAAGGGAAGGTGTGTGGCTACAACGAGGAGAGAAAATCCT ACCGAGTCTGGAACCCGAAAACTCGCCGCGTCGTGGAAAGCAGGAACGTC ACCTTCATCGAGACACCACCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10217:8532..9202+

>mRNA_H-elongata_contig10217.195.1 ID=mRNA_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig10217:8532..9202+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCCTTCACGCCTGCGGCCATAGGTGGCTACAAGTACGTCAGCAA
AATAACCGACGAGTACACAAATTGGACCGCCGTCTACTTGTTAACTACTA
AGGACCAAGCTCTTCAGTCGCTTCAACTGTTCGTCGGCTCAACAGTCATT
CCCTTCGGTGGCTACATCGTTTGTTGGCGCGCCGGCAAGGGCGGCGAGTA
CACCGGGGATAAGTTCCGGCAGTACTGCTTGGAGACCGGTATTATCCAAA
CGTTCAACGCAAACAACACGCCACAGCAAATGGGTGTGTTCGAACGAGTG
GGGAGGAATATGTGCGCGATGGTTCGGTGCATGCTCGCAGACAGCGGCTT
CCCATCGTCCATGTGGGAGGAGCTGTTCATGACAACAACAGGACTCCGCA
CAAGGCACTCAAGATGGAGACGCCGTTCAAGATGCTTCACGGCGAGGAAG
CCGATCTCTCGCACGTTCGCATGGGGCCCTTCACGCCTGCGGCCATAGGT
GGCTACAAGTACGTCAGCAAAATAACCGACGAGTACACAAATTGGACCGC
CGTCTACTTGTTAACTACTAAGGACCAAGCTCTTCAGTCGCTTCAACTGT
TCGTCGGCTCAACAGTCATTCCCTTCGGTGGCTACATCGTTTGTTGGCGC
GCCGGCAAGGGCGGCGAGTACACCGGGGATAAGTTCCGGCAGTACTGCTT
GGAGACCGGTATTATCCAAACGTTCAACGCAAACAACACGCCACAGCAAA
TGGGTGTGTTCGAACGAGTGGGGAGGAATATGTGCGCGATGGTTCGGTGC
ATGCTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGAGGAGCTGTTCAT
GACAACAACAGGACTCCGCACAAGGCACTCAAGATGGAGACGCCGTTCAA
GATGCTTCACGGCGAGGAAGCCGATCTCTCGCACGTTCGCAAAGCTTGAA
GCTGCGGCTTCGGAAGGGAAGGTGTGTGGCTACAACGAGGAGAGAAAATC
CTACCGAGTCTGGAACCCGAAAACTCGCCGCGTCGTGGAAAGCAGGAACG
TCACCTTCATCGAGACACCACCAAAAGCTTGAAGCTGCGGCTTCGGAAGG
GAAGGTGTGTGGCTACAACGAGGAGAGAAAATCCTACCGAGTCTGGAACC
CGAAAACTCGCCGCGTCGTGGAAAGCAGGAACGTCACCTTCATCGAGACA
CCACCA
back to top