prot_H-elongata_contig10217.195.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10217.195.1
Unique Nameprot_H-elongata_contig10217.195.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length201
Homology
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 6.290e-42
Identity = 95/220 (43.18%), Postives = 126/220 (57.27%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRS---------------RCFTARKPISRTF--AKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 201
            +GPFTP A+GG+KY +K  D++T W  V L+  K  ++ +L+LF   TVIP    I   RA KG E+T   +RQYCL+ GI   F + NTP Q+G  ER GR +  +VRCMLADS  PS +W EL  T   L  RT H+     +               R   AR  +       KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIET P
Sbjct:  641 LGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTP 860          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.090e-41
Identity = 95/224 (42.41%), Postives = 125/224 (55.80%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRSRCFTARKPISRTFA---------------------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 201
            +GPFTP A+GG+KY +K  D++T W  V L+  K  ++ +L+LF   TVIP    I   RA KG E+T   +RQYCL+ GI   F + NTP Q+G  ER GR +  +VRCMLADS  PS +W EL  T   L  RT H+         T  K +  T A                     KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIE  P
Sbjct:  641 LGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNG----TPNKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVMFIEPTP 860          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.290e-38
Identity = 86/217 (39.63%), Postives = 121/217 (55.76%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 198
            +GP +P A GGY YVSK TDEY+    VYL+ +KD+A+ +L  F+   VIP G  +   R+  GGEYT + +R +C   GI+Q F A  TPQQ G+ ER GR +  +VRC++     P  +W EL  TT  +  R  H      +   R F  +  +       S  F  LE   S+       G + GY+ + ++YRV+NP+T+R+V SRNVTFIE
Sbjct:   54 LGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIE 270          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.000e-36
Identity = 84/210 (40.00%), Postives = 116/210 (55.24%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRR--------------------SRCFTARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRV 188
            +GPFTP A+GG+KY +K  D+ T W  + L+  K  ++ SL LF   TV+P G  I C R  +G E+T  +FRQYC + GI   F + NTPQQ+G  ER GR +  +VRC+LADS  P+ +W EL  T   L  R  H+  +                      SR F   +  +R   KLE  A EG++ GY+ + KSYR++N +TRRV
Sbjct:  536 LGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDKTCSVDSLALFNKGTVVPTGERIYCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTR---KLEHRAWEGRLVGYSMDSKSYRIYNSETRRV 742          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.490e-36
Identity = 83/217 (38.25%), Postives = 118/217 (54.38%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 198
            +GP +P A GG+ YVSK TDEY+    VYL+ TKD+A+ +L+ F+   VIP G  +   R+  GGEYT + + ++C   GI+Q F A  TPQQ G+ ER GR +  +VRC+L     P  +W EL  T   +  R  H      +   R F  +  +       S  F  +E   S+       G + GY+    +YR++NP T+R+V SRNVTFIE
Sbjct:  536 LGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIE 752          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.480e-35
Identity = 91/224 (40.62%), Postives = 119/224 (53.12%), Query Frame = 0
Query:    1 MGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 201
            MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  110 MGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.720e-35
Identity = 91/224 (40.62%), Postives = 119/224 (53.12%), Query Frame = 0
Query:    1 MGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 201
            MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  110 MGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.740e-35
Identity = 91/224 (40.62%), Postives = 119/224 (53.12%), Query Frame = 0
Query:    1 MGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 201
            MGP  P A    G + Y  KITD+YT    VYLL  K    +++  +    V   GGY I   R  KGGE TG +FR YC  + I   + A NTPQQ+GV ER G+ +  + RC+L D  FP SMW EL +T   L  R           +S+   +S   +  + I +R F        KL+  A EGK+CG+  + ++YRV NP    VVESRNVTFIE+PP
Sbjct:  110 MGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.750e-35
Identity = 84/226 (37.17%), Postives = 117/226 (51.77%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVF-ERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCF----------------------TARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 198
            +GP +P A GGY YVSK TDEY+    VYL+ +KD+A+ +L  F+   VIP G  +   R   GGEY+ + +R +C   GI+Q F    TPQQ G+  ER GR +  +VRC++     P  +W EL  TT  +  R  H      +   R F                      TA   +    +KL   A  G + GY+ + ++YRV+NP T+R+V SRNVTFIE
Sbjct:   40 LGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQQNGIISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRXXXXXXXRVIGSTASVHLETYKSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIE 265          
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.250e-34
Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 0
Query:    1 MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR 135
            MGPF+P A+GG+ Y+ K  D++  W  V+L+  K   + +LQLF  S + P    + C RA KGGEYT   F +YC + GI   F + NTPQ++G  ER+GR +  MVRC+LADSG P  +WEELFMT + L  R
Sbjct:  334 MGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNR 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE6.290e-4243.18Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE3.090e-4142.41Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KCZ9_9PHAE1.290e-3839.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KC00_9PHAE2.000e-3640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE9.490e-3638.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.480e-3540.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.720e-3540.63Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.740e-3540.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFB1_9PHAE2.750e-3537.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE1.250e-3447.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..157
e-value: 9.9E-17
score: 62.8
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 2..198
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..198
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..159
score: 11.842
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 6..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10217contigH-elongata_contig10217:8559..9202 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10217.195.1mRNA_H-elongata_contig10217.195.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10217 8532..9202 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10217.195.1 ID=prot_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVI
PFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERV
GRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTRHSRWRRRSRCFTARK
PISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETP
P
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf