mRNA_H-elongata_contig10217.195.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.790e-44 Identity = 99/229 (43.23%), Postives = 131/229 (57.21%), Query Frame = 1 Query: 1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRS---------------RCFTARKPISRTF--AKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630 PF L + D +GPFTP A+GG+KY +K D++T W V L+ K ++ +L+LF TVIP I RA KG E+T +RQYCL+ GI F + NTP Q+G ER GR + +VRCMLADS PS +W EL T L RT H+ + R AR + KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIET P Sbjct: 632 PFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTP 860
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 166 bits (420), Expect = 8.800e-44 Identity = 99/233 (42.49%), Postives = 130/233 (55.79%), Query Frame = 1 Query: 1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGL--RTRHSRWRRRSRCFTARKPISRTFA---------------------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630 PF L + D +GPFTP A+GG+KY +K D++T W V L+ K ++ +L+LF TVIP I RA KG E+T +RQYCL+ GI F + NTP Q+G ER GR + +VRCMLADS PS +W EL T L RT H+ T K + T A KL++ A EG++ GY+ + KSYR++N +TRRV ESRNV FIE P Sbjct: 632 PFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNG----TPNKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVMFIEPTP 860
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 155 bits (393), Expect = 9.830e-41 Identity = 89/221 (40.27%), Postives = 124/221 (56.11%), Query Frame = 1 Query: 16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621 Y DL+GP +P A GGY YVSK TDEY+ VYL+ +KD+A+ +L F+ VIP G + R+ GGEYT + +R +C GI+Q F A TPQQ G+ ER GR + +VRC++ P +W EL TT + R H + R F + + S F LE S+ G + GY+ + ++YRV+NP+T+R+V SRNVTFIE Sbjct: 50 YTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIE 270
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 149 bits (375), Expect = 9.240e-38 Identity = 86/221 (38.91%), Postives = 121/221 (54.75%), Query Frame = 1 Query: 16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCFTARKPI-------SRTFAKLEAAASE-------GKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621 Y DL+GP +P A GG+ YVSK TDEY+ VYL+ TKD+A+ +L+ F+ VIP G + R+ GGEYT + + ++C GI+Q F A TPQQ G+ ER GR + +VRC+L P +W EL T + R H + R F + + S F +E S+ G + GY+ +YR++NP T+R+V SRNVTFIE Sbjct: 532 YTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIE 752
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.660e-37 Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 1 Query: 1 PFLLCYGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR 432 PF L DLMGPF+P A+GG+ Y+ K D++ W V+L+ K + +LQLF S + P + C RA KGGEYT F +YC + GI F + NTPQ++G ER+GR + MVRC+LADSG P +WEELFMT + L R Sbjct: 325 PFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNR 468
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.670e-37 Identity = 87/230 (37.83%), Postives = 120/230 (52.17%), Query Frame = 1 Query: 16 YGDLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVF-ERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRRS---RCF----------------------TARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIE 621 Y DL+GP +P A GGY YVSK TDEY+ VYL+ +KD+A+ +L F+ VIP G + R GGEY+ + +R +C GI+Q F TPQQ G+ ER GR + +VRC++ P +W EL TT + R H + R F TA + +KL A G + GY+ + ++YRV+NP T+R+V SRNVTFIE Sbjct: 36 YTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQQNGIISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRXXXXXXXRVIGSTASVHLETYKSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIE 265
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 147 bits (370), Expect = 4.280e-37 Identity = 85/212 (40.09%), Postives = 117/212 (55.19%), Query Frame = 1 Query: 22 DLMGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGYIVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR--HSRWRRR--------------------SRCFTARKPISRTFAKLEAAASEGKVCGYNEERKSYRVWNPKTRRV 591 D +GPFTP A+GG+KY +K D+ T W + L+ K ++ SL LF TV+P G I C R +G E+T +FRQYC + GI F + NTPQQ+G ER GR + +VRC+LADS P+ +W EL T L R H+ + SR F + +R KLE A EG++ GY+ + KSYR++N +TRRV Sbjct: 534 DTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDKTCSVDSLALFNKGTVVPTGERIYCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTR---KLEHRAWEGRLVGYSMDSKSYRIYNSETRRV 742
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 143 bits (361), Expect = 5.750e-36 Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1 Query: 22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630 D MGP P A G + Y KITD+YT VYLL K +++ + V GGY I R KGGE TG +FR YC + I + A NTPQQ+GV ER G+ + + RC+L D FP SMW EL +T L R +S+ +S + + I +R F KL+ A EGK+CG+ + ++YRV NP VVESRNVTFIE+PP Sbjct: 108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 143 bits (361), Expect = 6.810e-36 Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1 Query: 22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630 D MGP P A G + Y KITD+YT VYLL K +++ + V GGY I R KGGE TG +FR YC + I + A NTPQQ+GV ER G+ + + RC+L D FP SMW EL +T L R +S+ +S + + I +R F KL+ A EGK+CG+ + ++YRV NP VVESRNVTFIE+PP Sbjct: 108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE) HSP 1 Score: 143 bits (361), Expect = 6.880e-36 Identity = 92/226 (40.71%), Postives = 120/226 (53.10%), Query Frame = 1 Query: 22 DLMGPFTPAAI---GGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIPFGGY-IVCWRAGKGGEYTGDKFRQYCLETGIIQTFNANNTPQQMGVFERVGRNMCAMVRCMLADSGFPSSMWEELFMTTTGLRTR-----------HSRWRRRSRCFTARKPI-SRTFA-------KLEAAASEGKVCGYNEERKSYRVWNPKTRRVVESRNVTFIETPP 630 D MGP P A G + Y KITD+YT VYLL K +++ + V GGY I R KGGE TG +FR YC + I + A NTPQQ+GV ER G+ + + RC+L D FP SMW EL +T L R +S+ +S + + I +R F KL+ A EGK+CG+ + ++YRV NP VVESRNVTFIE+PP Sbjct: 108 DNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY-NMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPP 332 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10217.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10217.195.1 >prot_H-elongata_contig10217.195.1 ID=prot_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp MGPFTPAAIGGYKYVSKITDEYTNWTAVYLLTTKDQALQSLQLFVGSTVIback to top mRNA from alignment at H-elongata_contig10217:8532..9202+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10217.195.1 ID=mRNA_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig10217:8532..9202+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10217:8532..9202+ >mRNA_H-elongata_contig10217.195.1 ID=mRNA_H-elongata_contig10217.195.1|Name=mRNA_H-elongata_contig10217.195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig10217:8532..9202+ (Himanthalia elongata Himel1 dioecious)back to top |