mRNA_H-elongata_contig10214.193.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI) HSP 1 Score: 367 bits (942), Expect = 5.900e-128 Identity = 187/198 (94.44%), Postives = 190/198 (95.96%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMK+QPT P +LT STQV G+GSGGGCC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 203
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A836CKR4_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR4_9STRA) HSP 1 Score: 339 bits (870), Expect = 5.560e-117 Identity = 172/198 (86.87%), Postives = 180/198 (90.91%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD++SF NVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAK FAD+LGIEFLETSAKNA+NV+ AFM M++ IK RMKTQPT KLTPS QV G + GGCC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRDSFQNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKEFADSLGIEFLETSAKNATNVDSAFMTMSAAIKGRMKTQPTAGAKGGTKLTPSAQVSGGATSGGCC 203
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA) HSP 1 Score: 327 bits (839), Expect = 3.040e-112 Identity = 166/199 (83.42%), Postives = 177/199 (88.94%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGG-GCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELD KT+KLQIWDTAGQERFRTIT+SYYRGAHGIIVVYDVTD+ESFNNVKQWL EI+RYACENVNKLLVGNKSDLEAKRAVTTEE K FAD++GIEFLETSAKNA NVEKAF+MM+ QIK RMKT P +LT QV G G+GG GCC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKTVKLQIWDTAGQERFRTITASYYRGAHGIIVVYDVTDRESFNNVKQWLTEIERYACENVNKLLVGNKSDLEAKRAVTTEEGKEFADSIGIEFLETSAKNADNVEKAFLMMSQQIKGRMKTAPAGGAKGGTRLTAGEQVGGGGAGGSGCC 204
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 n=22 Tax=Oomycota TaxID=4762 RepID=YPT1_PHYIN) HSP 1 Score: 324 bits (831), Expect = 4.540e-111 Identity = 169/198 (85.35%), Postives = 177/198 (89.39%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM P P A KLTP QVP +G G CC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG-GSKCC 201
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: W7TST3_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TST3_9STRA) HSP 1 Score: 324 bits (830), Expect = 6.910e-111 Identity = 166/198 (83.84%), Postives = 176/198 (88.89%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+ KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEI+RYA ENVNKLLVGNKSDLE KR V+TE AK FAD+LGI FLETSAKN++NVEKAF+ MASQIK+RMKTQP KLT ST V G G+ GCC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASSGCC 203
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: K3W769_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3W769_GLOUD) HSP 1 Score: 322 bits (825), Expect = 3.720e-110 Identity = 169/198 (85.35%), Postives = 176/198 (88.89%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+TE AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM PT P T KL T V +G GG CC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTEAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPT-APKPTLKLNQGTNVQQNG-GGKCC 201
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A140YWP8_PHYNI (Ras-related protein (Fragment) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A140YWP8_PHYNI) HSP 1 Score: 320 bits (821), Expect = 1.230e-109 Identity = 165/192 (85.94%), Postives = 174/192 (90.62%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSG 576 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSA+NA+NVEKAFMMMA+QIK RM P P A KLTP QVP +G Sbjct: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSARNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG 191
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A067C976_SAPPC (Ras-like GTP-binding protein YPT1 n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C976_SAPPC) HSP 1 Score: 320 bits (819), Expect = 2.950e-109 Identity = 167/198 (84.34%), Postives = 175/198 (88.38%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FAD+LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + P A + L P V SG GGCC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMASAPMQSKPAIS-LQPGQNV--SGKSGGCC 200
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A024FYE8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYE8_9STRA) HSP 1 Score: 319 bits (818), Expect = 4.490e-109 Identity = 167/198 (84.34%), Postives = 174/198 (87.88%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 594 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR VTTE FAD LGIEFLETSAKNA+NVE+AFM MASQIK RM PT P + K++P Q+P S SG CC Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLVAKRVVTTETGAQFADELGIEFLETSAKNAANVEEAFMKMASQIKKRMANAPT-APKQSIKISPGQQLP-SNSGSKCC 201
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A6A3UIH2_9STRA (Ras-like GTP-binding protein n=90 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UIH2_9STRA) HSP 1 Score: 322 bits (824), Expect = 5.950e-109 Identity = 166/192 (86.46%), Postives = 174/192 (90.62%), Query Frame = 1 Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSG 576 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM P P A KLTP QVP +G Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10214.193.1 >prot_H-elongata_contig10214.193.1 ID=prot_H-elongata_contig10214.193.1|Name=mRNA_H-elongata_contig10214.193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKback to top mRNA from alignment at H-elongata_contig10214:4077..6294- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10214.193.1 ID=mRNA_H-elongata_contig10214.193.1|Name=mRNA_H-elongata_contig10214.193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2218bp|location=Sequence derived from alignment at H-elongata_contig10214:4077..6294- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10214:4077..6294- >mRNA_H-elongata_contig10214.193.1 ID=mRNA_H-elongata_contig10214.193.1|Name=mRNA_H-elongata_contig10214.193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig10214:4077..6294- (Himanthalia elongata Himel1 dioecious)back to top |