prot_H-elongata_contig10214.193.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig10214.193.1
Unique Name	prot_H-elongata_contig10214.193.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	199

Homology

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 5.900e-128
Identity = 187/198 (94.44%), Postives = 190/198 (95.96%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMK+QPT  P    +LT STQV G+GSGGGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 203

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A836CKR4_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR4_9STRA)

HSP 1 Score: 339 bits (870), Expect = 5.560e-117
Identity = 172/198 (86.87%), Postives = 180/198 (90.91%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD++SF NVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAK FAD+LGIEFLETSAKNA+NV+ AFM M++ IK RMKTQPT       KLTPS QV G  + GGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRDSFQNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKEFADSLGIEFLETSAKNATNVDSAFMTMSAAIKGRMKTQPTAGAKGGTKLTPSAQVSGGATSGGCC 203

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA)

HSP 1 Score: 327 bits (839), Expect = 3.040e-112
Identity = 166/199 (83.42%), Postives = 177/199 (88.94%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGG-GCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELD KT+KLQIWDTAGQERFRTIT+SYYRGAHGIIVVYDVTD+ESFNNVKQWL EI+RYACENVNKLLVGNKSDLEAKRAVTTEE K FAD++GIEFLETSAKNA NVEKAF+MM+ QIK RMKT P        +LT   QV G G+GG GCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKTVKLQIWDTAGQERFRTITASYYRGAHGIIVVYDVTDRESFNNVKQWLTEIERYACENVNKLLVGNKSDLEAKRAVTTEEGKEFADSIGIEFLETSAKNADNVEKAFLMMSQQIKGRMKTAPAGGAKGGTRLTAGEQVGGGGAGGSGCC 204

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 n=22 Tax=Oomycota TaxID=4762 RepID=YPT1_PHYIN)

HSP 1 Score: 324 bits (831), Expect = 4.540e-111
Identity = 169/198 (85.35%), Postives = 177/198 (89.39%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM   P   P A  KLTP  QVP +G G  CC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG-GSKCC 201

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: W7TST3_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TST3_9STRA)

HSP 1 Score: 324 bits (830), Expect = 6.910e-111
Identity = 166/198 (83.84%), Postives = 176/198 (88.89%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+ KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEI+RYA ENVNKLLVGNKSDLE KR V+TE AK FAD+LGI FLETSAKN++NVEKAF+ MASQIK+RMKTQP        KLT ST V G G+  GCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASSGCC 203

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: K3W769_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3W769_GLOUD)

HSP 1 Score: 322 bits (825), Expect = 3.720e-110
Identity = 169/198 (85.35%), Postives = 176/198 (88.89%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+TE AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM   PT  P  T KL   T V  +G GG CC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTEAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPT-APKPTLKLNQGTNVQQNG-GGKCC 201

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A140YWP8_PHYNI (Ras-related protein (Fragment) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A140YWP8_PHYNI)

HSP 1 Score: 320 bits (821), Expect = 1.230e-109
Identity = 165/192 (85.94%), Postives = 174/192 (90.62%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSG 192
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSA+NA+NVEKAFMMMA+QIK RM   P   P A  KLTP  QVP +G
Sbjct:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSARNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG 191

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A067C976_SAPPC (Ras-like GTP-binding protein YPT1 n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C976_SAPPC)

HSP 1 Score: 320 bits (819), Expect = 2.950e-109
Identity = 167/198 (84.34%), Postives = 175/198 (88.38%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FAD+LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + P     A + L P   V  SG  GGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMASAPMQSKPAIS-LQPGQNV--SGKSGGCC 200

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A024FYE8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYE8_9STRA)

HSP 1 Score: 319 bits (818), Expect = 4.490e-109
Identity = 167/198 (84.34%), Postives = 174/198 (87.88%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC 198
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR VTTE    FAD LGIEFLETSAKNA+NVE+AFM MASQIK RM   PT  P  + K++P  Q+P S SG  CC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLVAKRVVTTETGAQFADELGIEFLETSAKNAANVEEAFMKMASQIKKRMANAPT-APKQSIKISPGQQLP-SNSGSKCC 201

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BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Match: A0A6A3UIH2_9STRA (Ras-like GTP-binding protein n=90 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UIH2_9STRA)

HSP 1 Score: 322 bits (824), Expect = 5.950e-109
Identity = 166/192 (86.46%), Postives = 174/192 (90.62%), Query Frame = 0

Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSG 192
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM   P   P A  KLTP  QVP +G
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG 196

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10214.193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNV2_ECTSI	5.900e-128	94.44	Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=...	[more]
A0A836CKR4_9STRA	5.560e-117	86.87	Ras related protein PiYpt1 n=1 Tax=Tribonema minus...	[more]
A0A835YQS3_9STRA	3.040e-112	83.42	Ras related protein PiYpt1 n=1 Tax=Tribonema minus...	[more]
YPT1_PHYIN	4.540e-111	85.35	Ras-like GTP-binding protein YPT1 n=22 Tax=Oomycot...	[more]
W7TST3_9STRA	6.910e-111	83.84	Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=42...	[more]
K3W769_GLOUD	3.720e-110	85.35	Uncharacterized protein n=4 Tax=Oomycota TaxID=476...	[more]
A0A140YWP8_PHYNI	1.230e-109	85.94	Ras-related protein (Fragment) n=4 Tax=Peronospora...	[more]
A0A067C976_SAPPC	2.950e-109	84.34	Ras-like GTP-binding protein YPT1 n=11 Tax=Saprole...	[more]
A0A024FYE8_9STRA	4.490e-109	84.34	Uncharacterized protein n=1 Tax=Albugo candida Tax...	[more]
A0A6A3UIH2_9STRA	5.950e-109	86.46	Ras-like GTP-binding protein n=90 Tax=Phytophthora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 27..43 score: 35.4 coord: 142..164 score: 43.84 coord: 107..120 score: 55.32 coord: 45..67 score: 56.42 coord: 4..25 score: 56.84
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 9..198 e-value: 9.3E-7 score: 38.5
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 6..167 e-value: 1.6E-14 score: 64.2
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..168 e-value: 0.0068 score: -2.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 4..167 e-value: 1.2E-108 score: 377.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 1..167 e-value: 1.2E-36 score: 137.8
None	No IPR available	GENE3D	3.40.50.300		coord: 1..198 e-value: 1.6E-74 score: 251.6
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..178
None	No IPR available	PANTHER	PTHR24073:SF963	RAS-RELATED PROTEIN RAB-1A	coord: 1..178
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..198 score: 39.148
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 2..160 e-value: 1.4E-34 score: 117.3
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 5..165 e-value: 3.3E-67 score: 225.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..185

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig10214	contig	H-elongata_contig10214:4077..6294 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10214.193.1	mRNA_H-elongata_contig10214.193.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig10214 4077..6294 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig10214.193.1 ID=prot_H-elongata_contig10214.193.1|Name=mRNA_H-elongata_contig10214.193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSK
TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHE
IDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNA
SNVEKAFMMMASQIKSRMKTQPTNRPHATNKLTPSTQVPGSGSGGGCC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase
IPR027417	P-loop_NTPase