mRNA_H-elongata_contig101762.152.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101762.152.1
Unique NamemRNA_H-elongata_contig101762.152.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101762.152.1 vs. uniprot
Match: D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.950e-6
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  130 DARSAELRKEYGHETLRNARETAKEALSALLLERKTIVSSVAEAKRKLAVTYP 288
            DARS ELR+ YG +TLR ARE AKEA S L+ E++ +++SVAEA++ L+  YP
Sbjct: 1051 DARSGELRERYGADTLRGAREAAKEAHSVLVREKRRLLASVAEAEKMLSSAYP 1103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101762.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRP3_ECTSI6.950e-656.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101762contigH-elongata_contig101762:1069..2091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size569
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101762.152.1prot_H-elongata_contig101762.152.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101762 1071..2091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.1564715-CDS-H-elongata_contig101762:1070..13411622929557.1564715-CDS-H-elongata_contig101762:1070..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1071..1341 -
1691679069.0160918-CDS-H-elongata_contig101762:1070..13411691679069.0160918-CDS-H-elongata_contig101762:1070..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1071..1341 -
1622929557.1743062-CDS-H-elongata_contig101762:1479..15051622929557.1743062-CDS-H-elongata_contig101762:1479..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1480..1505 -
1691679069.0242243-CDS-H-elongata_contig101762:1479..15051691679069.0242243-CDS-H-elongata_contig101762:1479..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1480..1505 -
1622929557.189005-CDS-H-elongata_contig101762:1821..20911622929557.189005-CDS-H-elongata_contig101762:1821..2091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1822..2091 -
1691679069.0444357-CDS-H-elongata_contig101762:1821..20911691679069.0444357-CDS-H-elongata_contig101762:1821..2091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101762 1822..2091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101762.152.1

>prot_H-elongata_contig101762.152.1 ID=prot_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
EAARARVERAHQQQRRLETRKARLSALEVEIAEAKSEVDSACADARSAEL
RKEYGHETLRNARETAKEALSALLLERKTIVSSVAEAKRKLAVTYPSMAA
AAARKLTAEEERATRASEVQQVVSSRTTAPAAPATVDATAPFDVNGEIDE
TIAGVGEPGAKAIVKAALARAAGADGGAGKGKAESNEQH
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mRNA from alignment at H-elongata_contig101762:1069..2091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101762.152.1 ID=mRNA_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig101762:1069..2091- (Himanthalia elongata Himel1 dioecious)
GAGGCAGCCAGGGCGCGCGTGGAACGCGCACACCAGCAGCAGCGGCGACT
GGAGACTCGCAAGGCGCGGCTCTCTGCCCTCGAAGTCGAGATTGCCGAGG
CCAAGTCGGAGGTAGATTCCGCGTGCGCCGATGCGCGTTCGGCGGAGCTG
CGAAAGGAGTACGGGCATGAGACTCTCCGCAACGCCCGCGAGACGGCGAA
AGAAGCGTTATCTGCGCTGTTGCTAGAACGCAAGACAATCGTGTCGAGCG
TAGCCGAGGCCAAGCGCAAGGTGAGAGTCGTTTTATTGGCAATATGGAGA
GGTCCGGCGTGTGATATGTTCAAGCGCATCAAGAGCCGTGTGGAGTGACT
GGCTCACGTCTTCATCGAAGGCTCTCCAGTAAGGGTCACCCAGAGCAGGA
TCTGGCAAGTGTGTATTGGTTTGTTTTTTTGTTTGATTTTAGGAACGTTG
AAAGGCACGGAGTGGAATTTATTCGTCCAAGATTCAGATATACCTTCAAC
GGAAAATACAGGATATAAACATATTAACGGACGCTAGGCTGCCTGCCCCC
CCCCCCCTTCCTCACACACACGATGCTCTTATTCAGCTTGCGGTTACCTA
TCCGTCCATGGCACAGCTGGAATTAGAGGCCAACTACGTTGCGCAGATTA
TCTCCCGATGCCCAGCGGCTCAAAACGCTCCGGAAGGTGGAGATATTGCT
GTCCGAGTTCCGGGTCCGTTCTGCGCCGACCCGAAGCTTCGACGCCGGAC
GGCTGCGGCAGCGAGGAAGCTCACCGCAGAGGAGGAACGTGCCACCCGAG
CTAGTGAGGTGCAACAGGTGGTGTCTTCCAGAACCACGGCCCCGGCGGCG
CCAGCCACTGTCGACGCTACTGCCCCTTTTGACGTAAATGGCGAAATCGA
CGAGACCATCGCCGGCGTGGGCGAACCAGGAGCGAAGGCGATCGTGAAGG
CGGCCCTGGCTCGAGCGGCTGGTGCCGATGGCGGAGCGGGAAAAGGCAAA
GCGGAGTCGAACGAACAGCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig101762:1069..2091-

>mRNA_H-elongata_contig101762.152.1 ID=mRNA_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig101762:1069..2091- (Himanthalia elongata Himel1 dioecious)
GAGGCAGCCAGGGCGCGCGTGGAACGCGCACACCAGCAGCAGCGGCGACT
GGAGACTCGCAAGGCGCGGCTCTCTGCCCTCGAAGTCGAGATTGCCGAGG
CCAAGTCGGAGGTAGATTCCGCGTGCGCCGATGCGCGTTCGGCGGAGCTG
CGAAAGGAGTACGGGCATGAGACTCTCCGCAACGCCCGCGAGACGGCGAA
AGAAGCGTTATCTGCGCTGTTGCTAGAACGCAAGACAATCGTGTCGAGCG
TAGCCGAGGCCAAGCGCAAGGAGGCAGCCAGGGCGCGCGTGGAACGCGCA
CACCAGCAGCAGCGGCGACTGGAGACTCGCAAGGCGCGGCTCTCTGCCCT
CGAAGTCGAGATTGCCGAGGCCAAGTCGGAGGTAGATTCCGCGTGCGCCG
ATGCGCGTTCGGCGGAGCTGCGAAAGGAGTACGGGCATGAGACTCTCCGC
AACGCCCGCGAGACGGCGAAAGAAGCGTTATCTGCGCTGTTGCTAGAACG
CAAGACAATCGTGTCGAGCGTAGCCGAGGCCAAGCGCAAGCTTGCGGTTA
CCTATCCGTCCATGGCCTTGCGGTTACCTATCCGTCCATGGCGGCTGCGG
CAGCGAGGAAGCTCACCGCAGAGGAGGAACGTGCCACCCGAGCTAGTGAG
GTGCAACAGGTGGTGTCTTCCAGAACCACGGCCCCGGCGGCGCCAGCCAC
TGTCGACGCTACTGCCCCTTTTGACGTAAATGGCGAAATCGACGAGACCA
TCGCCGGCGTGGGCGAACCAGGAGCGAAGGCGATCGTGAAGGCGGCCCTG
GCTCGAGCGGCTGGTGCCGATGGCGGAGCGGGAAAAGGCAAAGCGGAGTC
GAACGAACAGCACGGCTGCGGCAGCGAGGAAGCTCACCGCAGAGGAGGAA
CGTGCCACCCGAGCTAGTGAGGTGCAACAGGTGGTGTCTTCCAGAACCAC
GGCCCCGGCGGCGCCAGCCACTGTCGACGCTACTGCCCCTTTTGACGTAA
ATGGCGAAATCGACGAGACCATCGCCGGCGTGGGCGAACCAGGAGCGAAG
GCGATCGTGAAGGCGGCCCTGGCTCGAGCGGCTGGTGCCGATGGCGGAGC
GGGAAAAGGCAAAGCGGAGTCGAACGAACAGCAC
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