Homology
BLAST of mRNA_H-elongata_contig101762.152.1 vs. uniprot
Match:
D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)
HSP 1 Score: 56.2 bits (134), Expect = 6.950e-6
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 130 DARSAELRKEYGHETLRNARETAKEALSALLLERKTIVSSVAEAKRKLAVTYP 288
DARS ELR+ YG +TLR ARE AKEA S L+ E++ +++SVAEA++ L+ YP
Sbjct: 1051 DARSGELRERYGADTLRGAREAAKEAHSVLVREKRRLLASVAEAEKMLSSAYP 1103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101762.152.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.95e-6 / Id = 56.60 Sequence D7FRP3_ECTSI
Match Name E-value Identity Description
D7FRP3_ECTSI 6.950e-6 56.60 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 569 Cds size 567 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929557.1564715-CDS-H-elongata_contig101762:1070..1341 1622929557.1564715-CDS-H-elongata_contig101762:1070..1341 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1071..1341 - 1691679069.0160918-CDS-H-elongata_contig101762:1070..1341 1691679069.0160918-CDS-H-elongata_contig101762:1070..1341 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1071..1341 - 1622929557.1743062-CDS-H-elongata_contig101762:1479..1505 1622929557.1743062-CDS-H-elongata_contig101762:1479..1505 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1480..1505 - 1691679069.0242243-CDS-H-elongata_contig101762:1479..1505 1691679069.0242243-CDS-H-elongata_contig101762:1479..1505 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1480..1505 - 1622929557.189005-CDS-H-elongata_contig101762:1821..2091 1622929557.189005-CDS-H-elongata_contig101762:1821..2091 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1822..2091 - 1691679069.0444357-CDS-H-elongata_contig101762:1821..2091 1691679069.0444357-CDS-H-elongata_contig101762:1821..2091 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101762 1822..2091 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101762.152.1
>prot_H-elongata_contig101762.152.1 ID=prot_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
EAARARVERAHQQQRRLETRKARLSALEVEIAEAKSEVDSACADARSAEL back to top mRNA from alignment at H-elongata_contig101762:1069..2091-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101762.152.1 ID=mRNA_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig101762:1069..2091- (Himanthalia elongata Himel1 dioecious)GAGGCAGCCAGGGCGCGCGTGGAACGCGCACACCAGCAGCAGCGGCGACT
GGAGACTCGCAAGGCGCGGCTCTCTGCCCTCGAAGTCGAGATTGCCGAGG
CCAAGTCGGAGGTAGATTCCGCGTGCGCCGATGCGCGTTCGGCGGAGCTG
CGAAAGGAGTACGGGCATGAGACTCTCCGCAACGCCCGCGAGACGGCGAA
AGAAGCGTTATCTGCGCTGTTGCTAGAACGCAAGACAATCGTGTCGAGCG
TAGCCGAGGCCAAGCGCAAG GTGAGAGTCGTTTTATTGGCAATATGGAGA
GGTCCGGCGTGTGATATGTTCAAGCGCATCAAGAGCCGTGTGGAGTGACT
GGCTCACGTCTTCATCGAAGGCTCTCCAGTAAGGGTCACCCAGAGCAGGA
TCTGGCAAGTGTGTATTGGTTTGTTTTTTTGTTTGATTTTAGGAACGTTG
AAAGGCACGGAGTGGAATTTATTCGTCCAAGATTCAGATATACCTTCAAC
GGAAAATACAGGATATAAACATATTAACGGACGCTAGGCTGCCTGCCCCC
CCCCCCCTTCCTCACACACACGATGCTCTTATTCAGCTTGCGGTTACCTA
TCCGTCCATGGC ACAGCTGGAATTAGAGGCCAACTACGTTGCGCAGATTA
TCTCCCGATGCCCAGCGGCTCAAAACGCTCCGGAAGGTGGAGATATTGCT
GTCCGAGTTCCGGGTCCGTTCTGCGCCGACCCGAAGCTTCGACGCCGGAC
GGCTGCGGCAGCGAGGAAGCTCACCGCAGAGGAGGAACGTGCCACCCGAG
CTAGTGAGGTGCAACAGGTGGTGTCTTCCAGAACCACGGCCCCGGCGGCG
CCAGCCACTGTCGACGCTACTGCCCCTTTTGACGTAAATGGCGAAATCGA
CGAGACCATCGCCGGCGTGGGCGAACCAGGAGCGAAGGCGATCGTGAAGG
CGGCCCTGGCTCGAGCGGCTGGTGCCGATGGCGGAGCGGGAAAAGGCAAA
GCGGAGTCGAACGAACAGCAC back to top Coding sequence (CDS) from alignment at H-elongata_contig101762:1069..2091-
>mRNA_H-elongata_contig101762.152.1 ID=mRNA_H-elongata_contig101762.152.1|Name=mRNA_H-elongata_contig101762.152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig101762:1069..2091- (Himanthalia elongata Himel1 dioecious) back to top