mRNA_H-elongata_contig10174.148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10174.148.1
Unique NamemRNA_H-elongata_contig10174.148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A6H5JMA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA6_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 3.690e-92
Identity = 153/202 (75.74%), Postives = 175/202 (86.63%), Query Frame = 2 
Query:    5 VDAVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHG-REPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLGADETVIADICDVILSLYGERGPGY 607
            VDAVATALVFFH+FFM HSF KHER F+GSACLFLA+KVEE+ KRVE VMSK + VW+G R+PP+E+EK+FKRLREKILIAERCVLHTLGFQLTV HPY+ VM LLKKLF  G+GA  G G +KALNRQL+QA T FVNDSLLTT+CLQY P +VAAAVVYLSYL+M LPRV+T LL AD TV+A+ICD+ILSLY ERG G+
Sbjct:   65 VDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYLSYLYMGLPRVDTTLLEADVTVVANICDIILSLYDERGAGH 266
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: D8LLM1_ECTSI (Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM1_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.250e-85
Identity = 142/185 (76.76%), Postives = 160/185 (86.49%), Query Frame = 2 
Query:    5 VDAVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHG-REPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLGADETVIA 556
            VDAVATALVFFH+FFM HSF KHER F+GSACLFLA+KVEE+ KRVE VMSK + VW+G R+PPAE+EK+FKRLREKILIAERCVLHTLGFQLTV HPY+ VM LLKKLF  G+GA  G G +KALNRQL+QA T FVNDSLLTT+CLQY P +VAAAVVYLSYL+M LPRV+T LL AD TV+A
Sbjct:   52 VDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPAENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYLSYLYMGLPRVDTMLLEADVTVVA 236
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S4F3M7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3M7_CHRCT)

HSP 1 Score: 140 bits (352), Expect = 2.740e-32
Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFM--------ELPRVET----NLLGADETVIADICDVILSLYGERGPGYPVTDN 622
            ++ATA+VF+HRFF   S+  + R  I + CLFLASKVEE PK+++ V+ + Y + HGR+ P    + FK L+E+IL++ER +L TLGF LTV H Y  ++  +K +  QG              R L Q    F+NDSL TT+CLQY P  V+AA VYL+  ++        ELP  +     +     E    D+ + I+ LY  +  G P   N
Sbjct:   90 SIATAIVFYHRFFAHKSYENYCRFTIATTCLFLASKVEETPKKLKDVVIETYRIQHGRQAPDPESQEFKDLKERILVSERVLLQTLGFDLTVEHAYRPLLAYVKSI--QG-------------TRDLAQVAWNFINDSLRTTICLQYAPRHVSAAAVYLAARYLSEHHDKLYELPPHQGGKWYDAFHVSEEAFQDVANQIMELYDSKANGGPALAN 290
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A6V1NFC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NFC1_HETAK)

HSP 1 Score: 136 bits (343), Expect = 3.710e-32
Identity = 88/208 (42.31%), Postives = 120/208 (57.69%), Query Frame = 2 
Query:   14 VATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRL-REKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNL------------LGADETV----IADICDVILSLY 586
            VATA VFFHRFF R SF +H+R  + +ACL LA KVEE+PK++EVV + C+AV H      E E    ++ +EKIL  ER +LHT+GF + + HPY  ++E+ KKL  + +G   GN  + A  RQ  Q    FVNDS  T++CL++ P  VAA  V+L+ LF  L R E  L             G D+      + DIC  ++ LY
Sbjct:   54 VATAHVFFHRFFARQSFKQHDRFDVAAACLHLAGKVEESPKKLEVVAATCHAVRHRGAKTLEKESEESKIAKEKILTCERILLHTMGFDMCIEHPYKYLIEVCKKL--KNKGIIGGN-QDDAGGRQFAQTALNFVNDSFRTSLCLRHPPPLVAAGAVFLAALFAGL-RPEGRLGAGWLRLLAPVESGFDQLAFEHKLYDICRQVMELY 257
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BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S2B1V0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1V0_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.740e-30
Identity = 72/198 (36.36%), Postives = 116/198 (58.59%), Query Frame = 2 
Query:   14 VATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEH--EKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETN-----LLGADETVIADICDVILSLY 586
            +ATA VFFHRF+   SF K  R  I   CLFLA KVEE P+++E V+  C+ +W+  + P  +   + ++ LR  IL  ER +LHT+ F L V+HPY  +++ +KKL   G        + +   R+  Q+   F+NDS+ T++CLQ+ P ++A+A +YL+ ++M + + E N      L  +   +A IC+ I+ +Y
Sbjct:   51 IATAQVFFHRFYALQSFKKFRRFDIAVTCLFLAGKVEEYPRKLESVIQMCHQIWNKLDKPTLNPDSQDYEFLRLTILRTERQILHTIAFDLCVKHPYKDLIDTVKKLHQAGL-------IEEKQKREFAQSALNFLNDSMRTSICLQFEPKKIASATIYLATVYMNMNKPEENPDWMKKLEINHQELASICEQIMEVY 241
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A1Z5JU78_FISSO (Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU78_FISSO)

HSP 1 Score: 132 bits (331), Expect = 2.280e-30
Identity = 82/231 (35.50%), Postives = 128/231 (55.41%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAV-WHGRE-------PPAEHEK--TFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGR-----------GAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMEL-PRVETN-----LLGADETVIADICDVILSLYGERGPGYPVTDN 622
            A+ATA+VFFHRF+ +HSF +H+R  +  ACL LA+K EE+PK++ VV+ +C  + W G +       PP    K   F +L+E++L+ ER +LHT+GF+L++ HPY  ++E +K+L  QG+           G  S     + +  ++ Q    F NDS+ T++CLQ+ P ++A   VYL+  F  L P  E++     LL  D   +  I   ++ L  ER    P   N
Sbjct:   47 AIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEESPKKLVVVLEECQKLKWRGMQAGSASVKPPDLDPKGEEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQL-VQGKKLIYQNNHTPVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIALTCVYLAAQFGHLMPANESDDWCDSLLSIDPASLVSIALQLIELIAERKGSDPTVLN 276
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A1E7FTI4_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTI4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.550e-29
Identity = 67/165 (40.61%), Postives = 106/165 (64.24%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEK--TFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLF 499
            A++TA+VFFHRF+ +H+F +H+R  +  A L LA+K EE PK++  V+ +CY +   R   A H K   F +L+E+IL+ ER +LHT+GF+L++ HPY   ++++KKL            ++K +N +L Q +    NDS  T++CLQ+ P E+A A VYL+ +F
Sbjct:   36 AISTAMVFFHRFYAKHAFQEHDRFEVAVAALVLAAKTEEAPKKLNTVIQECYKL-KARAMQAGHTKGEDFLKLKERILLLERIILHTIGFELSIDHPYKFFVDMIKKLII----------MSKMMN-ELVQYSMSTANDSYQTSLCLQFGPKEIATACVYLACMF 188
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A0L0DBG6_THETB (Cyclin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBG6_THETB)

HSP 1 Score: 124 bits (310), Expect = 1.200e-27
Identity = 82/223 (36.77%), Postives = 120/223 (53.81%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVET-------NLLGADETVIADICDVILSLYGERGPGYPVTDNDAACTPTTASVS 658
            A ATA++FFHRFF+R SF KH+   +   CLFLA+KVEE+ K++  V+   +   +  E  A  +    +L+E+ILI ER VL TL F LTV HPY  +M +   + A               +R+L Q+   F+NDSL  T+CL+Y P EVAAA +YLS L  ++   E        +++G     +  I + IL +Y   G G  V    A  + +T++ S
Sbjct:   53 AKATAVLFFHRFFLRRSFKKHDAWLVAVTCLFLATKVEESSKKLRNVVDMAFEQRYPGE--ARDDSKLFQLKEQILIHERKVLQTLAFDLTVVHPYKDLMPMASDIHA---------------SRELAQSAWSFINDSLSMTLCLRYQPREVAAAAIYLSALHQKVNLDEKLEGKSWIDIVGVPLKTLEMISNEILDMYARHG-GTVVAQGSAGASSSTSTAS 257
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S3BI51_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BI51_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.860e-27
Identity = 82/212 (38.68%), Postives = 115/212 (54.25%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHE-KTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFME--------LPRVET-----NLLGADETVIADICDVILSLYGERGPG 604
            ++ATA++F HRFF R S+  ++R  + + CLFLASKVEE PK+++ V+S+ Y V H ++   E E K F  L+EKIL+ ER +L  L F L+V H Y  ++  +K +    +G            R L Q    F+NDSL TTVCLQY P  +AAA   L+  +++        LP         +   A E VIADI   IL +Y    PG
Sbjct:   88 SIATAIIFLHRFFARESYEHYDRFIVATTCLFLASKVEETPKKLKDVVSETYKVHHSKDRGPEPESKEFFELKEKILVCERILLQALAFDLSVEHAYRPLLAYVKSI----KGT-----------RDLAQIAWNFINDSLRTTVCLQYAPRCLAAAAADLAAKYIKTDSGKGFALPDTPQGQKWYHAFQATEEVIADISSQILEMYESNKPG 284
[Close]
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S4MTZ4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MTZ4_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 3.030e-27
Identity = 77/210 (36.67%), Postives = 113/210 (53.81%), Query Frame = 2 
Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHE-KTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLG-------------ADETVIADICDVILSLYGERG 598
            ++ATA+VFFHRF+ R S+  ++R  + + CLFLASKVEE PK+++ V+ + Y   H +E   E E K F  L+EKIL+ ER +L  LGF L+V H Y  ++  +K +    +G            R L Q    F+NDS  TT+CLQY P  +AAA  ++S  ++E       +L               D  +I DI   I ++Y E+G
Sbjct:   74 SIATAIVFFHRFYARMSYEHYDRFTVATTCLFLASKVEETPKKLKDVVMETYKTQHNQEKAPEPETKEFFELKEKILVCERILLQALGFDLSVEHAYRPLLAYVKSI----KGT-----------RDLAQIAWNFINDSFRTTICLQYAPRHLAAAAAHMSARYLETHNKRAIVLPDHQSGGKWYASFQTDMEIIDDIKCQIFAMYREKG 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA6_9PHAE3.690e-9275.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM1_ECTSI3.250e-8576.76Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S4F3M7_CHRCT2.740e-3238.43Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A6V1NFC1_HETAK3.710e-3242.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2B1V0_9STRA1.740e-3036.36Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JU78_FISSO2.280e-3035.50Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
A0A1E7FTI4_9STRA4.550e-2940.61Cyclin-like protein (Fragment) n=1 Tax=Fragilariop... [more]
A0A0L0DBG6_THETB1.200e-2736.77Cyclin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID... [more]
A0A7S3BI51_9EUKA1.860e-2738.68Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4MTZ4_9EUKA3.030e-2736.67Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10174contigH-elongata_contig10174:880..5006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score106.7
Seed ortholog evalue2e-20
Seed eggNOG ortholog296587.XP_002507701.1
Preferred nameCycK
KEGG koko:K15188
KEGG Pathwayko05202,map05202
GOsGO:0000079,GO:0000307,GO:0000902,GO:0000904,GO:0001932,GO:0001934,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010026,GO:0010090,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048366,GO:0048367,GO:0048468,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090558,GO:0090626,GO:0098772,GO:0099402,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Belongs to the cyclin family
EggNOG OGs34MUP@3041,37HRJ@33090,COG5333@1,KOG0834@2759
COG Functional cat.D
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin T
Ec32 orthologEc-04_005240.1
Exons5
Model size2352
Cds size951
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.6769536-UTR-H-elongata_contig10174:879..22311622929556.6769536-UTR-H-elongata_contig10174:879..2231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10174 880..2231 -
1691679068.8191214-UTR-H-elongata_contig10174:879..22311691679068.8191214-UTR-H-elongata_contig10174:879..2231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10174 880..2231 -
1622929556.7872698-UTR-H-elongata_contig10174:4957..50061622929556.7872698-UTR-H-elongata_contig10174:4957..5006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10174 4958..5006 -
1691679068.8824997-UTR-H-elongata_contig10174:4957..50061691679068.8824997-UTR-H-elongata_contig10174:4957..5006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10174 4958..5006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.699619-CDS-H-elongata_contig10174:2231..26741622929556.699619-CDS-H-elongata_contig10174:2231..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 2232..2674 -
1691679068.8315208-CDS-H-elongata_contig10174:2231..26741691679068.8315208-CDS-H-elongata_contig10174:2231..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 2232..2674 -
1622929556.7164497-CDS-H-elongata_contig10174:3167..33271622929556.7164497-CDS-H-elongata_contig10174:3167..3327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 3168..3327 -
1691679068.841584-CDS-H-elongata_contig10174:3167..33271691679068.841584-CDS-H-elongata_contig10174:3167..3327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 3168..3327 -
1622929556.7316616-CDS-H-elongata_contig10174:3669..38341622929556.7316616-CDS-H-elongata_contig10174:3669..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 3670..3834 -
1691679068.8518863-CDS-H-elongata_contig10174:3669..38341691679068.8518863-CDS-H-elongata_contig10174:3669..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 3670..3834 -
1622929556.7506905-CDS-H-elongata_contig10174:4407..45151622929556.7506905-CDS-H-elongata_contig10174:4407..4515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 4408..4515 -
1691679068.8611276-CDS-H-elongata_contig10174:4407..45151691679068.8611276-CDS-H-elongata_contig10174:4407..4515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 4408..4515 -
1622929556.7686262-CDS-H-elongata_contig10174:4882..49571622929556.7686262-CDS-H-elongata_contig10174:4882..4957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 4883..4957 -
1691679068.8734531-CDS-H-elongata_contig10174:4882..49571691679068.8734531-CDS-H-elongata_contig10174:4882..4957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10174 4883..4957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10174.148.1prot_H-elongata_contig10174.148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10174 2232..4957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10174.148.1

>prot_H-elongata_contig10174.148.1 ID=prot_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAE
HEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGA
GSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLF
MELPRVETNLLGADETVIADICDVILSLYGERGPGYPVTDNDAACTPTTA
SVSPATPPSPSQKPPAETGAASPRVSDGNAGGSSEAAKRERRSYSGGGGS
SRRSGAFGGLASRSADEETRSRNPGPSTPASAGKSPRPIGQGGKGAVLFG
GGEEKGVTRVTKRQKL*
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mRNA from alignment at H-elongata_contig10174:880..5006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10174.148.1 ID=mRNA_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4127bp|location=Sequence derived from alignment at H-elongata_contig10174:880..5006- (Himanthalia elongata Himel1 dioecious)
TCACGTGGACGCCGTGGCGACGGCGCTGGTTTTTTTCCACAGGTTTTTCA
TGCGACATTCCTTCCTCAAGCACGAGCGGATGTTCATCGGATCGGCGTGT
CTGTTTCTGGCTTCCAAGGTTGAGGTGCGAGCGAGCGCGTGCGCGAGTCC
AACTCCTGCCGATCGAGTCCACAAGAGTACCCTAGCTGCTCCACGCGCGG
GAACACTCTCTCTAAAAAAAACGTGCTTTCGGTGTGAAGATGCCCTTCCT
ATAGCGGAATATAACGGCTGAGCCGCAACGAAGCGTCTGTGCGGACGACG
AGAGCGATAGTCTAGAGTGTGTGATCGCGCTAGGTTTGTTATTTATTTCG
GGCTTACTCGGGGTGTTTCGTCGGGTGCCCTAAAGTTGGGTTGATTTTAA
CCGGATCGCCGTTTTTCACGCCCTCCCCTCCCTCTCTCTTCCTCTTTTTT
TCCGACCGTGCCCCGAACGCGAACGCCGCGGGAGGGAGCAGGAGAACCCC
AAGAGGGTGGAAGTGGTAATGAGCAAGTGCTATGCCGTGTGGCACGGCAG
GGAGCCCCCGGCTGAGCACGAAAAGACCTTCAAGCGGCTCAGGGAGAAGG
TGCGGCTTTTTTTGCTCTCATCTCTCTTATGTCTATACGTTATGTCTCTT
TCTCTTTCTATTCCACCCATGTCACGAAAACAATACAATATAGTGCATAA
GGGCTTCGGATTGGTCAATCAAGCGGTGTACAGGATTTCGAGCGGTATAC
TCATAGGTTAAAACACGCCGTATCCTAATGGACATACCTAGTAGTCTATT
AGCACACATCCCAACAATGCCGGAACGTAGCGATGTCGGGTTTTCGCCGG
ACAGACTGCGTTTCGCAAGGATTACACCAGGTTTTCGTCATAGTCGTCAT
AGTCATTGCGGCGTTTGCTACGCCCAAAGTGGACATGCCAAGGGTTAATG
GAAGACACACCGGGTAGCTAAATGTTGCACATTCCGCGGGCGTTATCGGC
TATACTCAATATAATAGTACAATACCGCAAAGGGAGGGAATAAGGGGGAT
TTTCATTTGACTAATTATTAGGCAGGCATCTCCATCGATATGTTTACTGT
ATTTGAACCATGCAGCCATCCCCTCTCTCCCACCCCTTTCCTGGGCCCTT
CTATGATGGCGGTGGCACACAGATTCTGATCGCCGAACGCTGCGTGCTGC
ACACGCTGGGATTTCAGCTGACCGTGCGACACCCCTACACGGCGGTGATG
GAGCTCCTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGGGAGCGGCAA
TGGCGTTAATAAGGCGTTGAATCGACAACTGAATCAGGTGAGGGTACACA
TGGCCAAAACTGCGGCAGGGTTATCGTTAGTGGAGCTAGAACCGAGCGAA
TTGCGTGATATTGTTTCTGCGCGACGCTAGAGAGTCCGCTCCCCCACCCG
TCTTCTTTAGAGTTCCGTAGCGTATGTTGCAGTCGGCAAGTTACCATTTA
CTGTGGTGGCTGTCTGCCGGCGTGTTTTCTTTTTTCTCCAAGCAAAACAT
TCCGTAGTACATTGTCGCACCAATACTTGCTGGTACGTTTCTAAATGCCT
GATTATCTTAACACTTTTACTCACTTTTACTTGTATGTGTGCGTTGGGGG
GGGGGTAATTGCTTTGACCGCTTGTCCAGGCCACGACGTGCTTCGTGAAT
GACAGTCTGCTCACCACCGTGTGCCTCCAGTACCATCCTGCAGAGGTAGC
GGCGGCGGTAGTGTACCTTTCTTACCTTTTCATGGAGTTACCTCGGGTGG
AAACCAACCTCCTGGGTGCCGACGAGACCGTGATCGCGGGTGAGATATAG
TGTACGCCAGATGCTACGCTGGTGCGTTGCGCCACGTTACGTTACGTGAC
GCTACTCCGATCACGCTCTTCCCGGAGACTAGATTCCGTGATGCCCCCCC
CCCCCTCCCCACCCCCTCATTGTTCTCCGAGAATGGGTAGCCAATCAACG
GTGTTGCTGTATTTAAACGGTGGAAGAACATCGGCGCGATTGATGGATCG
ATTGTGTTGATTGTGTATTGAGAATCGACCGACAAAAAGGGAGTGCCAGC
GGCGGTAACCGCGGTCTGAAGGGTGAACGCCTCGGTAGTTAAAATATTAT
GGTAAAACAGGTTGAATGGCTACCGCACCGGCAGCAATCACCGTCCGAGT
CGGGGGGAAATAAAATAAAAATAAAATAGAGCGGAACAGCATGAATGAGA
GCTCTTATAGGAGCAAGTAACCTTGCACAACTTACCGTCGTTGCCTTTGT
TGCGCTGTGTTTCACGTTGCTTCCTCTCCAAGATATCTGCGATGTGATCC
TCTCCCTCTACGGCGAACGCGGCCCGGGCTACCCCGTCACCGACAACGAC
GCCGCCTGCACGCCGACAACCGCCTCCGTCTCTCCTGCAACGCCGCCTTC
GCCTTCTCAGAAACCTCCCGCTGAAACCGGCGCAGCGTCGCCGCGCGTCA
GCGACGGTAACGCTGGCGGTTCCTCCGAGGCTGCCAAGAGAGAACGACGA
AGCTATAGCGGCGGTGGTGGTAGCAGCAGAAGGAGCGGGGCGTTTGGTGG
GCTGGCTAGCCGATCTGCGGACGAGGAGACTCGAAGTCGGAACCCCGGAC
CTTCTACCCCGGCCTCCGCGGGGAAATCCCCTCGACCTATCGGCCAGGGC
GGGAAGGGGGCGGTCTTGTTTGGGGGGGGGGAGGAAAAGGGGGTAACGAG
AGTCACGAAGCGTCAGAAGTTGTAGCAGAGATGTATATACTAGAGACTCA
ACCGCGCTTGGTTGTGATAAATATTGTTGAAGAGGCGGAAGAGCGACTTC
TAGTTTCCGCTGAGCCACTATAAAAAATATCATTGGGAACTTCGTGTAGC
CCCCCCTCCCCCCCCCTACGCCCTTTTCTACGAGCTGAGTTTCGGGGGGC
GTTTTTTTAACGACATGTCTCGTCATTATCCGCCCCGCACTTCGTTGTTT
ATCGCCTATTTTTTCTTGTTGGGGATGCAAAACATCGCCTCTGGTTTGGT
TTATTTCTTACCTAGTACTATATATTTTTACGGAGGACGGAGTATTTCCG
AAATACAAATTGTTCTTCGAAGAACAGTACTTGATGCGTTCCTCGCTTGA
AACAGCGGAGAAAATCTTGTGATCGCCGTAAGAAGAAAGGAAGGCCTAGA
AGTATACTCATTTTGATATTGATTTTTGAACCGAACATTAAAAATCGTGG
AAATAGCAAAAATTGAAGACGCGAAAGAAGAGTGTGCATGTATTTTGAAT
TGAATTGTCATCATGGGAAACAAACTGATGCTCGAGAAGAAGGTGTGGAA
AAAATCTACCACGAGCGATAGTCTTGAGTCTGAGGTACAACGCGCCCCGT
CTTGGGGGGCATTGGATTTAAAATAAAGGAGGGTTGAATTTAGAACCGAA
ATTTCGTGTGGAAACCCTTCCCTCAATATCAAGAAAATGTTCAAACAGCT
GGACAATAATGGGTGCTATATCGCATTTTGGCCAAGGACACGGACGTGGT
GAGGAAGACGATGCGTAAATACAAACTTCTTGGTTTTAGATTTTGCCTTC
CGAAACTATATGTTACAATAAGGTTAAAGGCTCGTTAACTCAATCGCTCC
ACATAGCCTATATTAAGTAGACCATCCACCATCCTTCGTGATCGAGATCG
GTAGCCTCCTTTCACAAACGACCAAGGCCGCGAATAGTGCGTGTGCTCGA
GGCCGAGATGAACGATGATGCAGCGGAATGGGCAGACGGCGTCGAGTTGG
ATTCTTAGGGGAAGCTGTGCAGCATGCGTCTCCCGCGAGGCGTCGCCCCA
CATGATGAATTATTCACATGTGATGATTTTGTGCTCAAGGGTAGTTATGT
CCACAGTCGAACCTGACAATAGTTGGTTCCCTGGACTGCACCTCTCATGG
TGCTAAGAAGGTGCGGATACTCGAAGGGTTAGAGTTATTACAAATCTATC
TGTGAGAGAATAAGTTAGTTGTGAGTCGTAACAAGAGGAGCAGGTTACTA
ACTGATTTCCAGATTTCAAATTTCATATCTGATCTTAAGTCGGGCGATGA
TTTTGAATTGTTACATGTTTTAGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig10174:880..5006-

>mRNA_H-elongata_contig10174.148.1 ID=mRNA_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig10174:880..5006- (Himanthalia elongata Himel1 dioecious)
ATGCGACATTCCTTCCTCAAGCACGAGCGGATGTTCATCGGATCGGCGTG
TCTGTTTCTGGCTTCCAAGGTTGAGATGCGACATTCCTTCCTCAAGCACG
AGCGGATGTTCATCGGATCGGCGTGTCTGTTTCTGGCTTCCAAGGTTGAG
GAGAACCCCAAGAGGGTGGAAGTGGTAATGAGCAAGTGCTATGCCGTGTG
GCACGGCAGGGAGCCCCCGGCTGAGCACGAAAAGACCTTCAAGCGGCTCA
GGGAGAAGGAGAACCCCAAGAGGGTGGAAGTGGTAATGAGCAAGTGCTAT
GCCGTGTGGCACGGCAGGGAGCCCCCGGCTGAGCACGAAAAGACCTTCAA
GCGGCTCAGGGAGAAGATTCTGATCGCCGAACGCTGCGTGCTGCACACGC
TGGGATTTCAGCTGACCGTGCGACACCCCTACACGGCGGTGATGGAGCTC
CTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGGGAGCGGCAATGGCGT
TAATAAGGCGTTGAATCGACAACTGAATCAGATTCTGATCGCCGAACGCT
GCGTGCTGCACACGCTGGGATTTCAGCTGACCGTGCGACACCCCTACACG
GCGGTGATGGAGCTCCTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGG
GAGCGGCAATGGCGTTAATAAGGCGTTGAATCGACAACTGAATCAGGCCA
CGACGTGCTTCGTGAATGACAGTCTGCTCACCACCGTGTGCCTCCAGTAC
CATCCTGCAGAGGTAGCGGCGGCGGTAGTGTACCTTTCTTACCTTTTCAT
GGAGTTACCTCGGGTGGAAACCAACCTCCTGGGTGCCGACGAGACCGTGA
TCGCGGGCCACGACGTGCTTCGTGAATGACAGTCTGCTCACCACCGTGTG
CCTCCAGTACCATCCTGCAGAGGTAGCGGCGGCGGTAGTGTACCTTTCTT
ACCTTTTCATGGAGTTACCTCGGGTGGAAACCAACCTCCTGGGTGCCGAC
GAGACCGTGATCGCGGATATCTGCGATGTGATCCTCTCCCTCTACGGCGA
ACGCGGCCCGGGCTACCCCGTCACCGACAACGACGCCGCCTGCACGCCGA
CAACCGCCTCCGTCTCTCCTGCAACGCCGCCTTCGCCTTCTCAGAAACCT
CCCGCTGAAACCGGCGCAGCGTCGCCGCGCGTCAGCGACGGTAACGCTGG
CGGTTCCTCCGAGGCTGCCAAGAGAGAACGACGAAGCTATAGCGGCGGTG
GTGGTAGCAGCAGAAGGAGCGGGGCGTTTGGTGGGCTGGCTAGCCGATCT
GCGGACGAGGAGACTCGAAGTCGGAACCCCGGACCTTCTACCCCGGCCTC
CGCGGGGAAATCCCCTCGACCTATCGGCCAGGGCGGGAAGGGGGCGGTCT
TGTTTGGGGGGGGGGAGGAAAAGGGGGTAACGAGAGTCACGAAGCGTCAG
AAGTTGTAGATATCTGCGATGTGATCCTCTCCCTCTACGGCGAACGCGGC
CCGGGCTACCCCGTCACCGACAACGACGCCGCCTGCACGCCGACAACCGC
CTCCGTCTCTCCTGCAACGCCGCCTTCGCCTTCTCAGAAACCTCCCGCTG
AAACCGGCGCAGCGTCGCCGCGCGTCAGCGACGGTAACGCTGGCGGTTCC
TCCGAGGCTGCCAAGAGAGAACGACGAAGCTATAGCGGCGGTGGTGGTAG
CAGCAGAAGGAGCGGGGCGTTTGGTGGGCTGGCTAGCCGATCTGCGGACG
AGGAGACTCGAAGTCGGAACCCCGGACCTTCTACCCCGGCCTCCGCGGGG
AAATCCCCTCGACCTATCGGCCAGGGCGGGAAGGGGGCGGTCTTGTTTGG
GGGGGGGGAGGAAAAGGGGGTAACGAGAGTCACGAAGCGTCAGAAGTTGT
AG
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