mRNA_H-elongata_contig10174.148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig10174.148.1
Unique Name	mRNA_H-elongata_contig10174.148.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A6H5JMA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA6_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 3.690e-92
Identity = 153/202 (75.74%), Postives = 175/202 (86.63%), Query Frame = 2

Query:    5 VDAVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHG-REPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLGADETVIADICDVILSLYGERGPGY 607
            VDAVATALVFFH+FFM HSF KHER F+GSACLFLA+KVEE+ KRVE VMSK + VW+G R+PP+E+EK+FKRLREKILIAERCVLHTLGFQLTV HPY+ VM LLKKLF  G+GA  G G +KALNRQL+QA T FVNDSLLTT+CLQY P +VAAAVVYLSYL+M LPRV+T LL AD TV+A+ICD+ILSLY ERG G+
Sbjct:   65 VDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYLSYLYMGLPRVDTTLLEADVTVVANICDIILSLYDERGAGH 266

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: D8LLM1_ECTSI (Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM1_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.250e-85
Identity = 142/185 (76.76%), Postives = 160/185 (86.49%), Query Frame = 2

Query:    5 VDAVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHG-REPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLGADETVIA 556
            VDAVATALVFFH+FFM HSF KHER F+GSACLFLA+KVEE+ KRVE VMSK + VW+G R+PPAE+EK+FKRLREKILIAERCVLHTLGFQLTV HPY+ VM LLKKLF  G+GA  G G +KALNRQL+QA T FVNDSLLTT+CLQY P +VAAAVVYLSYL+M LPRV+T LL AD TV+A
Sbjct:   52 VDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPAENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYLSYLYMGLPRVDTMLLEADVTVVA 236

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S4F3M7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3M7_CHRCT)

HSP 1 Score: 140 bits (352), Expect = 2.740e-32
Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFM--------ELPRVET----NLLGADETVIADICDVILSLYGERGPGYPVTDN 622
            ++ATA+VF+HRFF   S+  + R  I + CLFLASKVEE PK+++ V+ + Y + HGR+ P    + FK L+E+IL++ER +L TLGF LTV H Y  ++  +K +  QG              R L Q    F+NDSL TT+CLQY P  V+AA VYL+  ++        ELP  +     +     E    D+ + I+ LY  +  G P   N
Sbjct:   90 SIATAIVFYHRFFAHKSYENYCRFTIATTCLFLASKVEETPKKLKDVVIETYRIQHGRQAPDPESQEFKDLKERILVSERVLLQTLGFDLTVEHAYRPLLAYVKSI--QG-------------TRDLAQVAWNFINDSLRTTICLQYAPRHVSAAAVYLAARYLSEHHDKLYELPPHQGGKWYDAFHVSEEAFQDVANQIMELYDSKANGGPALAN 290

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A6V1NFC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NFC1_HETAK)

HSP 1 Score: 136 bits (343), Expect = 3.710e-32
Identity = 88/208 (42.31%), Postives = 120/208 (57.69%), Query Frame = 2

Query:   14 VATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRL-REKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNL------------LGADETV----IADICDVILSLY 586
            VATA VFFHRFF R SF +H+R  + +ACL LA KVEE+PK++EVV + C+AV H      E E    ++ +EKIL  ER +LHT+GF + + HPY  ++E+ KKL  + +G   GN  + A  RQ  Q    FVNDS  T++CL++ P  VAA  V+L+ LF  L R E  L             G D+      + DIC  ++ LY
Sbjct:   54 VATAHVFFHRFFARQSFKQHDRFDVAAACLHLAGKVEESPKKLEVVAATCHAVRHRGAKTLEKESEESKIAKEKILTCERILLHTMGFDMCIEHPYKYLIEVCKKL--KNKGIIGGN-QDDAGGRQFAQTALNFVNDSFRTSLCLRHPPPLVAAGAVFLAALFAGL-RPEGRLGAGWLRLLAPVESGFDQLAFEHKLYDICRQVMELY 257

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S2B1V0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1V0_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.740e-30
Identity = 72/198 (36.36%), Postives = 116/198 (58.59%), Query Frame = 2

Query:   14 VATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEH--EKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETN-----LLGADETVIADICDVILSLY 586
            +ATA VFFHRF+   SF K  R  I   CLFLA KVEE P+++E V+  C+ +W+  + P  +   + ++ LR  IL  ER +LHT+ F L V+HPY  +++ +KKL   G        + +   R+  Q+   F+NDS+ T++CLQ+ P ++A+A +YL+ ++M + + E N      L  +   +A IC+ I+ +Y
Sbjct:   51 IATAQVFFHRFYALQSFKKFRRFDIAVTCLFLAGKVEEYPRKLESVIQMCHQIWNKLDKPTLNPDSQDYEFLRLTILRTERQILHTIAFDLCVKHPYKDLIDTVKKLHQAGL-------IEEKQKREFAQSALNFLNDSMRTSICLQFEPKKIASATIYLATVYMNMNKPEENPDWMKKLEINHQELASICEQIMEVY 241

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A1Z5JU78_FISSO (Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU78_FISSO)

HSP 1 Score: 132 bits (331), Expect = 2.280e-30
Identity = 82/231 (35.50%), Postives = 128/231 (55.41%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAV-WHGRE-------PPAEHEK--TFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGR-----------GAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMEL-PRVETN-----LLGADETVIADICDVILSLYGERGPGYPVTDN 622
            A+ATA+VFFHRF+ +HSF +H+R  +  ACL LA+K EE+PK++ VV+ +C  + W G +       PP    K   F +L+E++L+ ER +LHT+GF+L++ HPY  ++E +K+L  QG+           G  S     + +  ++ Q    F NDS+ T++CLQ+ P ++A   VYL+  F  L P  E++     LL  D   +  I   ++ L  ER    P   N
Sbjct:   47 AIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEESPKKLVVVLEECQKLKWRGMQAGSASVKPPDLDPKGEEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQL-VQGKKLIYQNNHTPVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIALTCVYLAAQFGHLMPANESDDWCDSLLSIDPASLVSIALQLIELIAERKGSDPTVLN 276

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A1E7FTI4_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTI4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.550e-29
Identity = 67/165 (40.61%), Postives = 106/165 (64.24%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEK--TFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLF 499
            A++TA+VFFHRF+ +H+F +H+R  +  A L LA+K EE PK++  V+ +CY +   R   A H K   F +L+E+IL+ ER +LHT+GF+L++ HPY   ++++KKL            ++K +N +L Q +    NDS  T++CLQ+ P E+A A VYL+ +F
Sbjct:   36 AISTAMVFFHRFYAKHAFQEHDRFEVAVAALVLAAKTEEAPKKLNTVIQECYKL-KARAMQAGHTKGEDFLKLKERILLLERIILHTIGFELSIDHPYKFFVDMIKKLII----------MSKMMN-ELVQYSMSTANDSYQTSLCLQFGPKEIATACVYLACMF 188

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A0L0DBG6_THETB (Cyclin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBG6_THETB)

HSP 1 Score: 124 bits (310), Expect = 1.200e-27
Identity = 82/223 (36.77%), Postives = 120/223 (53.81%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVET-------NLLGADETVIADICDVILSLYGERGPGYPVTDNDAACTPTTASVS 658
            A ATA++FFHRFF+R SF KH+   +   CLFLA+KVEE+ K++  V+   +   +  E  A  +    +L+E+ILI ER VL TL F LTV HPY  +M +   + A               +R+L Q+   F+NDSL  T+CL+Y P EVAAA +YLS L  ++   E        +++G     +  I + IL +Y   G G  V    A  + +T++ S
Sbjct:   53 AKATAVLFFHRFFLRRSFKKHDAWLVAVTCLFLATKVEESSKKLRNVVDMAFEQRYPGE--ARDDSKLFQLKEQILIHERKVLQTLAFDLTVVHPYKDLMPMASDIHA---------------SRELAQSAWSFINDSLSMTLCLRYQPREVAAAAIYLSALHQKVNLDEKLEGKSWIDIVGVPLKTLEMISNEILDMYARHG-GTVVAQGSAGASSSTSTAS 257

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S3BI51_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BI51_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.860e-27
Identity = 82/212 (38.68%), Postives = 115/212 (54.25%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHE-KTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFME--------LPRVET-----NLLGADETVIADICDVILSLYGERGPG 604
            ++ATA++F HRFF R S+  ++R  + + CLFLASKVEE PK+++ V+S+ Y V H ++   E E K F  L+EKIL+ ER +L  L F L+V H Y  ++  +K +    +G            R L Q    F+NDSL TTVCLQY P  +AAA   L+  +++        LP         +   A E VIADI   IL +Y    PG
Sbjct:   88 SIATAIIFLHRFFARESYEHYDRFIVATTCLFLASKVEETPKKLKDVVSETYKVHHSKDRGPEPESKEFFELKEKILVCERILLQALAFDLSVEHAYRPLLAYVKSI----KGT-----------RDLAQIAWNFINDSLRTTVCLQYAPRCLAAAAADLAAKYIKTDSGKGFALPDTPQGQKWYHAFQATEEVIADISSQILEMYESNKPG 284

[Close]

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Match: A0A7S4MTZ4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MTZ4_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 3.030e-27
Identity = 77/210 (36.67%), Postives = 113/210 (53.81%), Query Frame = 2

Query:   11 AVATALVFFHRFFMRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAEHE-KTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGAGSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLFMELPRVETNLLG-------------ADETVIADICDVILSLYGERG 598
            ++ATA+VFFHRF+ R S+  ++R  + + CLFLASKVEE PK+++ V+ + Y   H +E   E E K F  L+EKIL+ ER +L  LGF L+V H Y  ++  +K +    +G            R L Q    F+NDS  TT+CLQY P  +AAA  ++S  ++E       +L               D  +I DI   I ++Y E+G
Sbjct:   74 SIATAIVFFHRFYARMSYEHYDRFTVATTCLFLASKVEETPKKLKDVVMETYKTQHNQEKAPEPETKEFFELKEKILVCERILLQALGFDLSVEHAYRPLLAYVKSI----KGT-----------RDLAQIAWNFINDSFRTTICLQYAPRHLAAAAAHMSARYLETHNKRAIVLPDHQSGGKWYASFQTDMEIIDDIKCQIFAMYREKG 268

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10174.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JMA6_9PHAE	3.690e-92	75.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LLM1_ECTSI	3.250e-85	76.76	Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
A0A7S4F3M7_CHRCT	2.740e-32	38.43	Hypothetical protein n=2 Tax=Chrysotila carterae T...	[more]
A0A6V1NFC1_HETAK	3.710e-32	42.31	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2B1V0_9STRA	1.740e-30	36.36	Hypothetical protein n=2 Tax=Dictyocha speculum Ta...	[more]
A0A1Z5JU78_FISSO	2.280e-30	35.50	Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565...	[more]
A0A1E7FTI4_9STRA	4.550e-29	40.61	Cyclin-like protein (Fragment) n=1 Tax=Fragilariop...	[more]
A0A0L0DBG6_THETB	1.200e-27	36.77	Cyclin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID...	[more]
A0A7S3BI51_9EUKA	1.860e-27	38.68	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
A0A7S4MTZ4_9EUKA	3.030e-27	36.67	Hypothetical protein n=1 Tax=Prymnesium polylepis ...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	106.7
Seed ortholog evalue	2e-20
Seed eggNOG ortholog	296587.XP_002507701.1
Preferred name	CycK
KEGG ko	ko:K15188
KEGG Pathway	ko05202,map05202
GOs	GO:0000079,GO:0000307,GO:0000902,GO:0000904,GO:0001932,GO:0001934,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010026,GO:0010090,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048366,GO:0048367,GO:0048468,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090558,GO:0090626,GO:0098772,GO:0099402,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.	Belongs to the cyclin family
EggNOG OGs	34MUP@3041,37HRJ@33090,COG5333@1,KOG0834@2759
COG Functional cat.	D
Best tax level	Chlorophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03021
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Cyclin T
Ec32 ortholog	Ec-04_005240.1
Exons	5
Model size	2352
Cds size	951
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929556.6769536-UTR-H-elongata_contig10174:879..2231	1622929556.6769536-UTR-H-elongata_contig10174:879..2231	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10174 880..2231 -
1691679068.8191214-UTR-H-elongata_contig10174:879..2231	1691679068.8191214-UTR-H-elongata_contig10174:879..2231	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10174 880..2231 -
1622929556.7872698-UTR-H-elongata_contig10174:4957..5006	1622929556.7872698-UTR-H-elongata_contig10174:4957..5006	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10174 4958..5006 -
1691679068.8824997-UTR-H-elongata_contig10174:4957..5006	1691679068.8824997-UTR-H-elongata_contig10174:4957..5006	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10174 4958..5006 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929556.699619-CDS-H-elongata_contig10174:2231..2674	1622929556.699619-CDS-H-elongata_contig10174:2231..2674	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 2232..2674 -
1691679068.8315208-CDS-H-elongata_contig10174:2231..2674	1691679068.8315208-CDS-H-elongata_contig10174:2231..2674	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 2232..2674 -
1622929556.7164497-CDS-H-elongata_contig10174:3167..3327	1622929556.7164497-CDS-H-elongata_contig10174:3167..3327	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 3168..3327 -
1691679068.841584-CDS-H-elongata_contig10174:3167..3327	1691679068.841584-CDS-H-elongata_contig10174:3167..3327	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 3168..3327 -
1622929556.7316616-CDS-H-elongata_contig10174:3669..3834	1622929556.7316616-CDS-H-elongata_contig10174:3669..3834	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 3670..3834 -
1691679068.8518863-CDS-H-elongata_contig10174:3669..3834	1691679068.8518863-CDS-H-elongata_contig10174:3669..3834	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 3670..3834 -
1622929556.7506905-CDS-H-elongata_contig10174:4407..4515	1622929556.7506905-CDS-H-elongata_contig10174:4407..4515	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 4408..4515 -
1691679068.8611276-CDS-H-elongata_contig10174:4407..4515	1691679068.8611276-CDS-H-elongata_contig10174:4407..4515	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 4408..4515 -
1622929556.7686262-CDS-H-elongata_contig10174:4882..4957	1622929556.7686262-CDS-H-elongata_contig10174:4882..4957	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 4883..4957 -
1691679068.8734531-CDS-H-elongata_contig10174:4882..4957	1691679068.8734531-CDS-H-elongata_contig10174:4882..4957	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10174 4883..4957 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10174.148.1	prot_H-elongata_contig10174.148.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig10174 2232..4957 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10174:880..5006-
coding sequence from alignment at H-elongata_contig10174:880..5006-

protein sequence of mRNA_H-elongata_contig10174.148.1

>prot_H-elongata_contig10174.148.1 ID=prot_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MRHSFLKHERMFIGSACLFLASKVEENPKRVEVVMSKCYAVWHGREPPAE
HEKTFKRLREKILIAERCVLHTLGFQLTVRHPYTAVMELLKKLFAQGRGA
GSGNGVNKALNRQLNQATTCFVNDSLLTTVCLQYHPAEVAAAVVYLSYLF
MELPRVETNLLGADETVIADICDVILSLYGERGPGYPVTDNDAACTPTTA
SVSPATPPSPSQKPPAETGAASPRVSDGNAGGSSEAAKRERRSYSGGGGS
SRRSGAFGGLASRSADEETRSRNPGPSTPASAGKSPRPIGQGGKGAVLFG
GGEEKGVTRVTKRQKL*

mRNA from alignment at H-elongata_contig10174:880..5006-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10174.148.1 ID=mRNA_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4127bp|location=Sequence derived from alignment at H-elongata_contig10174:880..5006- (Himanthalia elongata Himel1 dioecious)
TCACGTGGACGCCGTGGCGACGGCGCTGGTTTTTTTCCACAGGTTTTTCA
TGCGACATTCCTTCCTCAAGCACGAGCGGATGTTCATCGGATCGGCGTGT
CTGTTTCTGGCTTCCAAGGTTGAGGTGCGAGCGAGCGCGTGCGCGAGTCC
AACTCCTGCCGATCGAGTCCACAAGAGTACCCTAGCTGCTCCACGCGCGG
GAACACTCTCTCTAAAAAAAACGTGCTTTCGGTGTGAAGATGCCCTTCCT
ATAGCGGAATATAACGGCTGAGCCGCAACGAAGCGTCTGTGCGGACGACG
AGAGCGATAGTCTAGAGTGTGTGATCGCGCTAGGTTTGTTATTTATTTCG
GGCTTACTCGGGGTGTTTCGTCGGGTGCCCTAAAGTTGGGTTGATTTTAA
CCGGATCGCCGTTTTTCACGCCCTCCCCTCCCTCTCTCTTCCTCTTTTTT
TCCGACCGTGCCCCGAACGCGAACGCCGCGGGAGGGAGCAGGAGAACCCC
AAGAGGGTGGAAGTGGTAATGAGCAAGTGCTATGCCGTGTGGCACGGCAG
GGAGCCCCCGGCTGAGCACGAAAAGACCTTCAAGCGGCTCAGGGAGAAGG
TGCGGCTTTTTTTGCTCTCATCTCTCTTATGTCTATACGTTATGTCTCTT
TCTCTTTCTATTCCACCCATGTCACGAAAACAATACAATATAGTGCATAA
GGGCTTCGGATTGGTCAATCAAGCGGTGTACAGGATTTCGAGCGGTATAC
TCATAGGTTAAAACACGCCGTATCCTAATGGACATACCTAGTAGTCTATT
AGCACACATCCCAACAATGCCGGAACGTAGCGATGTCGGGTTTTCGCCGG
ACAGACTGCGTTTCGCAAGGATTACACCAGGTTTTCGTCATAGTCGTCAT
AGTCATTGCGGCGTTTGCTACGCCCAAAGTGGACATGCCAAGGGTTAATG
GAAGACACACCGGGTAGCTAAATGTTGCACATTCCGCGGGCGTTATCGGC
TATACTCAATATAATAGTACAATACCGCAAAGGGAGGGAATAAGGGGGAT
TTTCATTTGACTAATTATTAGGCAGGCATCTCCATCGATATGTTTACTGT
ATTTGAACCATGCAGCCATCCCCTCTCTCCCACCCCTTTCCTGGGCCCTT
CTATGATGGCGGTGGCACACAGATTCTGATCGCCGAACGCTGCGTGCTGC
ACACGCTGGGATTTCAGCTGACCGTGCGACACCCCTACACGGCGGTGATG
GAGCTCCTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGGGAGCGGCAA
TGGCGTTAATAAGGCGTTGAATCGACAACTGAATCAGGTGAGGGTACACA
TGGCCAAAACTGCGGCAGGGTTATCGTTAGTGGAGCTAGAACCGAGCGAA
TTGCGTGATATTGTTTCTGCGCGACGCTAGAGAGTCCGCTCCCCCACCCG
TCTTCTTTAGAGTTCCGTAGCGTATGTTGCAGTCGGCAAGTTACCATTTA
CTGTGGTGGCTGTCTGCCGGCGTGTTTTCTTTTTTCTCCAAGCAAAACAT
TCCGTAGTACATTGTCGCACCAATACTTGCTGGTACGTTTCTAAATGCCT
GATTATCTTAACACTTTTACTCACTTTTACTTGTATGTGTGCGTTGGGGG
GGGGGTAATTGCTTTGACCGCTTGTCCAGGCCACGACGTGCTTCGTGAAT
GACAGTCTGCTCACCACCGTGTGCCTCCAGTACCATCCTGCAGAGGTAGC
GGCGGCGGTAGTGTACCTTTCTTACCTTTTCATGGAGTTACCTCGGGTGG
AAACCAACCTCCTGGGTGCCGACGAGACCGTGATCGCGGGTGAGATATAG
TGTACGCCAGATGCTACGCTGGTGCGTTGCGCCACGTTACGTTACGTGAC
GCTACTCCGATCACGCTCTTCCCGGAGACTAGATTCCGTGATGCCCCCCC
CCCCCTCCCCACCCCCTCATTGTTCTCCGAGAATGGGTAGCCAATCAACG
GTGTTGCTGTATTTAAACGGTGGAAGAACATCGGCGCGATTGATGGATCG
ATTGTGTTGATTGTGTATTGAGAATCGACCGACAAAAAGGGAGTGCCAGC
GGCGGTAACCGCGGTCTGAAGGGTGAACGCCTCGGTAGTTAAAATATTAT
GGTAAAACAGGTTGAATGGCTACCGCACCGGCAGCAATCACCGTCCGAGT
CGGGGGGAAATAAAATAAAAATAAAATAGAGCGGAACAGCATGAATGAGA
GCTCTTATAGGAGCAAGTAACCTTGCACAACTTACCGTCGTTGCCTTTGT
TGCGCTGTGTTTCACGTTGCTTCCTCTCCAAGATATCTGCGATGTGATCC
TCTCCCTCTACGGCGAACGCGGCCCGGGCTACCCCGTCACCGACAACGAC
GCCGCCTGCACGCCGACAACCGCCTCCGTCTCTCCTGCAACGCCGCCTTC
GCCTTCTCAGAAACCTCCCGCTGAAACCGGCGCAGCGTCGCCGCGCGTCA
GCGACGGTAACGCTGGCGGTTCCTCCGAGGCTGCCAAGAGAGAACGACGA
AGCTATAGCGGCGGTGGTGGTAGCAGCAGAAGGAGCGGGGCGTTTGGTGG
GCTGGCTAGCCGATCTGCGGACGAGGAGACTCGAAGTCGGAACCCCGGAC
CTTCTACCCCGGCCTCCGCGGGGAAATCCCCTCGACCTATCGGCCAGGGC
GGGAAGGGGGCGGTCTTGTTTGGGGGGGGGGAGGAAAAGGGGGTAACGAG
AGTCACGAAGCGTCAGAAGTTGTAGCAGAGATGTATATACTAGAGACTCA
ACCGCGCTTGGTTGTGATAAATATTGTTGAAGAGGCGGAAGAGCGACTTC
TAGTTTCCGCTGAGCCACTATAAAAAATATCATTGGGAACTTCGTGTAGC
CCCCCCTCCCCCCCCCTACGCCCTTTTCTACGAGCTGAGTTTCGGGGGGC
GTTTTTTTAACGACATGTCTCGTCATTATCCGCCCCGCACTTCGTTGTTT
ATCGCCTATTTTTTCTTGTTGGGGATGCAAAACATCGCCTCTGGTTTGGT
TTATTTCTTACCTAGTACTATATATTTTTACGGAGGACGGAGTATTTCCG
AAATACAAATTGTTCTTCGAAGAACAGTACTTGATGCGTTCCTCGCTTGA
AACAGCGGAGAAAATCTTGTGATCGCCGTAAGAAGAAAGGAAGGCCTAGA
AGTATACTCATTTTGATATTGATTTTTGAACCGAACATTAAAAATCGTGG
AAATAGCAAAAATTGAAGACGCGAAAGAAGAGTGTGCATGTATTTTGAAT
TGAATTGTCATCATGGGAAACAAACTGATGCTCGAGAAGAAGGTGTGGAA
AAAATCTACCACGAGCGATAGTCTTGAGTCTGAGGTACAACGCGCCCCGT
CTTGGGGGGCATTGGATTTAAAATAAAGGAGGGTTGAATTTAGAACCGAA
ATTTCGTGTGGAAACCCTTCCCTCAATATCAAGAAAATGTTCAAACAGCT
GGACAATAATGGGTGCTATATCGCATTTTGGCCAAGGACACGGACGTGGT
GAGGAAGACGATGCGTAAATACAAACTTCTTGGTTTTAGATTTTGCCTTC
CGAAACTATATGTTACAATAAGGTTAAAGGCTCGTTAACTCAATCGCTCC
ACATAGCCTATATTAAGTAGACCATCCACCATCCTTCGTGATCGAGATCG
GTAGCCTCCTTTCACAAACGACCAAGGCCGCGAATAGTGCGTGTGCTCGA
GGCCGAGATGAACGATGATGCAGCGGAATGGGCAGACGGCGTCGAGTTGG
ATTCTTAGGGGAAGCTGTGCAGCATGCGTCTCCCGCGAGGCGTCGCCCCA
CATGATGAATTATTCACATGTGATGATTTTGTGCTCAAGGGTAGTTATGT
CCACAGTCGAACCTGACAATAGTTGGTTCCCTGGACTGCACCTCTCATGG
TGCTAAGAAGGTGCGGATACTCGAAGGGTTAGAGTTATTACAAATCTATC
TGTGAGAGAATAAGTTAGTTGTGAGTCGTAACAAGAGGAGCAGGTTACTA
ACTGATTTCCAGATTTCAAATTTCATATCTGATCTTAAGTCGGGCGATGA
TTTTGAATTGTTACATGTTTTAGAGGT

Coding sequence (CDS) from alignment at H-elongata_contig10174:880..5006-

>mRNA_H-elongata_contig10174.148.1 ID=mRNA_H-elongata_contig10174.148.1|Name=mRNA_H-elongata_contig10174.148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig10174:880..5006- (Himanthalia elongata Himel1 dioecious)
ATGCGACATTCCTTCCTCAAGCACGAGCGGATGTTCATCGGATCGGCGTG
TCTGTTTCTGGCTTCCAAGGTTGAGATGCGACATTCCTTCCTCAAGCACG
AGCGGATGTTCATCGGATCGGCGTGTCTGTTTCTGGCTTCCAAGGTTGAG
GAGAACCCCAAGAGGGTGGAAGTGGTAATGAGCAAGTGCTATGCCGTGTG
GCACGGCAGGGAGCCCCCGGCTGAGCACGAAAAGACCTTCAAGCGGCTCA
GGGAGAAGGAGAACCCCAAGAGGGTGGAAGTGGTAATGAGCAAGTGCTAT
GCCGTGTGGCACGGCAGGGAGCCCCCGGCTGAGCACGAAAAGACCTTCAA
GCGGCTCAGGGAGAAGATTCTGATCGCCGAACGCTGCGTGCTGCACACGC
TGGGATTTCAGCTGACCGTGCGACACCCCTACACGGCGGTGATGGAGCTC
CTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGGGAGCGGCAATGGCGT
TAATAAGGCGTTGAATCGACAACTGAATCAGATTCTGATCGCCGAACGCT
GCGTGCTGCACACGCTGGGATTTCAGCTGACCGTGCGACACCCCTACACG
GCGGTGATGGAGCTCCTGAAGAAGTTGTTCGCGCAGGGGCGGGGGGCGGG
GAGCGGCAATGGCGTTAATAAGGCGTTGAATCGACAACTGAATCAGGCCA
CGACGTGCTTCGTGAATGACAGTCTGCTCACCACCGTGTGCCTCCAGTAC
CATCCTGCAGAGGTAGCGGCGGCGGTAGTGTACCTTTCTTACCTTTTCAT
GGAGTTACCTCGGGTGGAAACCAACCTCCTGGGTGCCGACGAGACCGTGA
TCGCGGGCCACGACGTGCTTCGTGAATGACAGTCTGCTCACCACCGTGTG
CCTCCAGTACCATCCTGCAGAGGTAGCGGCGGCGGTAGTGTACCTTTCTT
ACCTTTTCATGGAGTTACCTCGGGTGGAAACCAACCTCCTGGGTGCCGAC
GAGACCGTGATCGCGGATATCTGCGATGTGATCCTCTCCCTCTACGGCGA
ACGCGGCCCGGGCTACCCCGTCACCGACAACGACGCCGCCTGCACGCCGA
CAACCGCCTCCGTCTCTCCTGCAACGCCGCCTTCGCCTTCTCAGAAACCT
CCCGCTGAAACCGGCGCAGCGTCGCCGCGCGTCAGCGACGGTAACGCTGG
CGGTTCCTCCGAGGCTGCCAAGAGAGAACGACGAAGCTATAGCGGCGGTG
GTGGTAGCAGCAGAAGGAGCGGGGCGTTTGGTGGGCTGGCTAGCCGATCT
GCGGACGAGGAGACTCGAAGTCGGAACCCCGGACCTTCTACCCCGGCCTC
CGCGGGGAAATCCCCTCGACCTATCGGCCAGGGCGGGAAGGGGGCGGTCT
TGTTTGGGGGGGGGGAGGAAAAGGGGGTAACGAGAGTCACGAAGCGTCAG
AAGTTGTAGATATCTGCGATGTGATCCTCTCCCTCTACGGCGAACGCGGC
CCGGGCTACCCCGTCACCGACAACGACGCCGCCTGCACGCCGACAACCGC
CTCCGTCTCTCCTGCAACGCCGCCTTCGCCTTCTCAGAAACCTCCCGCTG
AAACCGGCGCAGCGTCGCCGCGCGTCAGCGACGGTAACGCTGGCGGTTCC
TCCGAGGCTGCCAAGAGAGAACGACGAAGCTATAGCGGCGGTGGTGGTAG
CAGCAGAAGGAGCGGGGCGTTTGGTGGGCTGGCTAGCCGATCTGCGGACG
AGGAGACTCGAAGTCGGAACCCCGGACCTTCTACCCCGGCCTCCGCGGGG
AAATCCCCTCGACCTATCGGCCAGGGCGGGAAGGGGGCGGTCTTGTTTGG
GGGGGGGGAGGAAAAGGGGGTAACGAGAGTCACGAAGCGTCAGAAGTTGT
AG