mRNA_H-elongata_contig101327.117.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101327.117.1
Unique NamemRNA_H-elongata_contig101327.117.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6P0LFB3_9CYAN (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Moorena sp. SIO3H5 TaxID=2607834 RepID=A0A6P0LFB3_9CYAN)

HSP 1 Score: 174 bits (440), Expect = 2.260e-54
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAM+ LGL+P+   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGS+DNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMHELGLSPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTE 124
[Close]
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.380e-53
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPD RDGLKPVHRRILYAMYGL LNPE +HRKCARVVGEVLGKYHPHGD+AVYDALVRMAQDFVMSAPLI GHGNFGSIDNDPAAAMRYTE
Sbjct:  188 GRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRKCARVVGEVLGKYHPHGDMAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTE 281
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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2XV43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV43_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.210e-52
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDG+KPVHRRILYAM+ LGL PE  +RKCARVVGEVLGK+HPHGD AVYDALVRMAQDFVMS  L+ GHGNFGSIDNDP AAMRYTE
Sbjct:   43 GRALPDARDGMKPVHRRILYAMHQLGLRPEGGYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFVMSEVLVKGHGNFGSIDNDPPAAMRYTE 136
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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI001A0E7CCB (DNA gyrase subunit A n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A0E7CCB)

HSP 1 Score: 168 bits (426), Expect = 7.770e-51
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAM+ LGL P+   RKCARVVG+V+GKYHPHGD AVYDALVRMAQDF M  PL++GHGNFGS+DNDP AAMRYTE
Sbjct:   26 GRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLPLVDGHGNFGSVDNDPPAAMRYTE 119
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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI0019AA5F91 (DNA gyrase subunit A n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019AA5F91)

HSP 1 Score: 171 bits (433), Expect = 1.720e-50
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAM+ LGLNP+  +RKCARVVG+VLGKYHPHGD AVYDALVR+AQDF   +PLI GHGNFGS+DNDPAAAMRYTE
Sbjct:   26 GRALPDARDGLKPVHRRILYAMHELGLNPDRPYRKCARVVGDVLGKYHPHGDTAVYDALVRLAQDFSTRSPLIAGHGNFGSVDNDPAAAMRYTE 119
[Close]
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC)

HSP 1 Score: 179 bits (454), Expect = 2.170e-50
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRIL+AM GL L+PESS RKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMS PL+NGHGNFGS+D DP AAMRYTE
Sbjct:   48 GRALPDARDGLKPVHRRILWAMQGLNLSPESSFRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSGPLVNGHGNFGSVDGDPPAAMRYTE 141
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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.630e-50
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPD RDGLKPVHRRILYAM+GLGL PES +RKCARVVGEVLGK+HPHGDVAVYDALVRMAQDFVM+APLI GHGNFGSID DP AAMRYTE
Sbjct:   10 GRALPDVRDGLKPVHRRILYAMHGLGLQPESGYRKCARVVGEVLGKFHPHGDVAVYDALVRMAQDFVMAAPLIAGHGNFGSIDADPPAAMRYTE 103
[Close]
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A838VWQ0_9NOST (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VWQ0_9NOST)

HSP 1 Score: 171 bits (432), Expect = 4.610e-50
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAM+ LGL  +   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124
[Close]
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2R192_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R192_9STRA)

HSP 1 Score: 172 bits (436), Expect = 7.120e-50
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAM GL L P +SHRKCARVVGEVLGKYHPHGD+AVYDALVR+AQ F    PLI+GHGNFGSIDNDPAAAMRYTE
Sbjct:   72 GRALPDARDGLKPVHRRILYAMNGLSLKPTTSHRKCARVVGEVLGKYHPHGDMAVYDALVRLAQTFSTGTPLIDGHGNFGSIDNDPAAAMRYTE 165
[Close]
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: L8LYI5_9CYAN (DNA gyrase subunit A n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LYI5_9CYAN)

HSP 1 Score: 177 bits (448), Expect = 1.050e-49
Identity = 84/94 (89.36%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
            GRALPDARDGLKPVHRRILYAMY LGL PE   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0LFB3_9CYAN2.260e-5486.17DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
A0A6H5KKP9_9PHAE1.380e-5393.62DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectoca... [more]
A0A7S2XV43_9STRA1.210e-5285.11Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI001A0E7CCB7.770e-5181.91DNA gyrase subunit A n=1 Tax=Synechococcales cyano... [more]
UPI0019AA5F911.720e-5084.04DNA gyrase subunit A n=1 Tax=Gloeobacterales cyano... [more]
A0A0G4ESH9_VITBC2.170e-5089.36DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrel... [more]
A0A836CKD9_9STRA3.630e-5089.36DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribon... [more]
A0A838VWQ0_9NOST4.610e-5086.17DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
A0A7S2R192_9STRA7.120e-5086.17Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
L8LYI5_9CYAN1.050e-4989.36DNA gyrase subunit A n=1 Tax=Xenococcus sp. PCC 73... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101327contigH-elongata_contig101327:567..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue7.1e-46
Seed eggNOG ortholog2880.D8LPZ0
Preferred nameGYRA
KEGG koko:K02469,ko:K03164
KEGG Pathwayko01524,map01524
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0009295,GO:0009507,GO:0009536,GO:0016592,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0070013
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.256932-CDS-H-elongata_contig101327:566..7171622929553.256932-CDS-H-elongata_contig101327:566..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101327 567..717 +
1691679067.112876-CDS-H-elongata_contig101327:566..7171691679067.112876-CDS-H-elongata_contig101327:566..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101327 567..717 +
1622929553.266836-CDS-H-elongata_contig101327:1887..20181622929553.266836-CDS-H-elongata_contig101327:1887..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101327 1888..2018 +
1691679067.1393769-CDS-H-elongata_contig101327:1887..20181691679067.1393769-CDS-H-elongata_contig101327:1887..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101327 1888..2018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101327.117.1prot_H-elongata_contig101327.117.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101327 567..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101327.117.1

>prot_H-elongata_contig101327.117.1 ID=prot_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPH
GDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE
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mRNA from alignment at H-elongata_contig101327:567..2018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101327.117.1 ID=mRNA_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1452bp|location=Sequence derived from alignment at H-elongata_contig101327:567..2018+ (Himanthalia elongata Himel1 dioecious)
GGTCGAGCACTGCCGGACGCCCGCGATGGGCTGAAGCCAGTGCACCGGCG
GATCCTGTACGCGATGTACGGGCTGGGGCTGAACCCGGAGAGCTCCCACA
GGAAGTGCGCGAGGGTGGTGGGCGAGGTGCTGGGGAAGTACCATCCACAT
GGTGAGAAAGGACGGAATGCTCTCCTCTTTTCGCCACGCAAAAACTCTCT
GTAGATCATATCTATATATCTATATATATTATATATATATGCTATCTCGA
CGTATATATGTTGTCATCATATTTATTCTGGGCGTCAAACTGGTGGAGGA
AAGGTCGCACATGATTTCTCCACATTTATTCCATCTGCGGTGCTTGCCTT
AATTTTTTTTTTTTAATGGCGAGAAGGATTCAAGAGGCCCTTTCCCTCGT
CGACCGTGAAGTCAAAGTTTGTGTACCCACTAAATAATCGTTCTCCACTT
GTTGGGCATGGTGTTAAGAGAAATCCCAGGTCGTGTGACTGCACCGAGAT
TCGAACTCACGTCCCAATGTCAGAAGGATTCGAGGTTACCAACTGAACCA
CCGGGGCGACCGATTTTTTTAATATATTCTATCATTTACCATCTATCATC
TATCATCTACCATCTACCATCTACCATCTATCATTTACCATCTATCATCT
ATCATCTACCATCTACCATCTATCATCTATCATCTACCATCTACCATCTA
GCTGGGTGAAACGGAAAACCAAACGGACAATCCAACACGAACAAACAATT
AAACGATGACATCATAATGGAAGGCGTGGATGTTCGGAGGGTTGGAATGA
GTTTATGTTTTTTTTAAAGAAAAATGACTTCATAATTATTTTGAACAAAA
CAAAAAAACCAACAGACAAAAAACAACTCATCTCTCTCTCTCTCTCCCGC
CCCCTCCCACCCAGTAAAAACTAATGAGTCGAAAGAAGAGCGCGAGCCGT
CGCTCCATCGAGCGTGTGCGCGCGCACCCGCAAAGCAAGACCTTGCGGTG
ACAGCTCAAATCGTCGGCTGAGTTTTTCGCCTCGAGAGATGTTCCCACCG
CAAGTTGATTCATTCATTTTATTTATTCATTGATAGAATTCGCTGATTCA
TTCATTCATTCATTCATTTATTCGCCGATTCAGTTATTTCGAGTGCATAT
CACATTGTCCTTGCTACTGAAGGACTACTGTTACACACACCTGGGTCGGC
CATAGACTTATCGTATGCCAATCGATCGCGGTGGTGAATCCAAAGAGGTT
CAGAAGTCCTGAAAGTAAATTAAAAAACGGGTCGCGTATTGGTCGTAAAC
CTTGCTTGGCCGGCGAAACAGGTGACGTGGCCGTTTACGACGCCCTCGTG
CGGATGGCCCAGGATTTCGTCATGAGCGCGCCTCTGATCAACGGCCATGG
GAACTTCGGGAGCATCGACAACGACCCGGCGGCCGCGATGCGTTACACGG
AG
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Coding sequence (CDS) from alignment at H-elongata_contig101327:567..2018+

>mRNA_H-elongata_contig101327.117.1 ID=mRNA_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig101327:567..2018+ (Himanthalia elongata Himel1 dioecious)
GGTCGAGCACTGCCGGACGCCCGCGATGGGCTGAAGCCAGTGCACCGGCG
GATCCTGTACGCGATGTACGGGCTGGGGCTGAACCCGGAGAGCTCCCACA
GGAAGTGCGCGAGGGTGGTGGGCGAGGTGCTGGGGAAGTACCATCCACAT
GGGTCGAGCACTGCCGGACGCCCGCGATGGGCTGAAGCCAGTGCACCGGC
GGATCCTGTACGCGATGTACGGGCTGGGGCTGAACCCGGAGAGCTCCCAC
AGGAAGTGCGCGAGGGTGGTGGGCGAGGTGCTGGGGAAGTACCATCCACA
TGGTGACGTGGCCGTTTACGACGCCCTCGTGCGGATGGCCCAGGATTTCG
TCATGAGCGCGCCTCTGATCAACGGCCATGGGAACTTCGGGAGCATCGAC
AACGACCCGGCGGCCGCGATGCGTTACACGGAGGTGACGTGGCCGTTTAC
GACGCCCTCGTGCGGATGGCCCAGGATTTCGTCATGAGCGCGCCTCTGAT
CAACGGCCATGGGAACTTCGGGAGCATCGACAACGACCCGGCGGCCGCGA
TGCGTTACACGGAG
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