prot_H-elongata_contig101327.117.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig101327.117.1
Unique Name	prot_H-elongata_contig101327.117.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	94

Homology

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6P0LFB3_9CYAN (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Moorena sp. SIO3H5 TaxID=2607834 RepID=A0A6P0LFB3_9CYAN)

HSP 1 Score: 174 bits (440), Expect = 2.260e-54
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAM+ LGL+P+   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGS+DNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMHELGLSPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTE 124

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.380e-53
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPD RDGLKPVHRRILYAMYGL LNPE +HRKCARVVGEVLGKYHPHGD+AVYDALVRMAQDFVMSAPLI GHGNFGSIDNDPAAAMRYTE
Sbjct:  188 GRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRKCARVVGEVLGKYHPHGDMAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTE 281

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2XV43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV43_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.210e-52
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDG+KPVHRRILYAM+ LGL PE  +RKCARVVGEVLGK+HPHGD AVYDALVRMAQDFVMS  L+ GHGNFGSIDNDP AAMRYTE
Sbjct:   43 GRALPDARDGMKPVHRRILYAMHQLGLRPEGGYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFVMSEVLVKGHGNFGSIDNDPPAAMRYTE 136

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI001A0E7CCB (DNA gyrase subunit A n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A0E7CCB)

HSP 1 Score: 168 bits (426), Expect = 7.770e-51
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAM+ LGL P+   RKCARVVG+V+GKYHPHGD AVYDALVRMAQDF M  PL++GHGNFGS+DNDP AAMRYTE
Sbjct:   26 GRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLPLVDGHGNFGSVDNDPPAAMRYTE 119

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI0019AA5F91 (DNA gyrase subunit A n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019AA5F91)

HSP 1 Score: 171 bits (433), Expect = 1.720e-50
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAM+ LGLNP+  +RKCARVVG+VLGKYHPHGD AVYDALVR+AQDF   +PLI GHGNFGS+DNDPAAAMRYTE
Sbjct:   26 GRALPDARDGLKPVHRRILYAMHELGLNPDRPYRKCARVVGDVLGKYHPHGDTAVYDALVRLAQDFSTRSPLIAGHGNFGSVDNDPAAAMRYTE 119

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC)

HSP 1 Score: 179 bits (454), Expect = 2.170e-50
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRIL+AM GL L+PESS RKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMS PL+NGHGNFGS+D DP AAMRYTE
Sbjct:   48 GRALPDARDGLKPVHRRILWAMQGLNLSPESSFRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSGPLVNGHGNFGSVDGDPPAAMRYTE 141

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.630e-50
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPD RDGLKPVHRRILYAM+GLGL PES +RKCARVVGEVLGK+HPHGDVAVYDALVRMAQDFVM+APLI GHGNFGSID DP AAMRYTE
Sbjct:   10 GRALPDVRDGLKPVHRRILYAMHGLGLQPESGYRKCARVVGEVLGKFHPHGDVAVYDALVRMAQDFVMAAPLIAGHGNFGSIDADPPAAMRYTE 103

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A838VWQ0_9NOST (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VWQ0_9NOST)

HSP 1 Score: 171 bits (432), Expect = 4.610e-50
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAM+ LGL  +   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2R192_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R192_9STRA)

HSP 1 Score: 172 bits (436), Expect = 7.120e-50
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAM GL L P +SHRKCARVVGEVLGKYHPHGD+AVYDALVR+AQ F    PLI+GHGNFGSIDNDPAAAMRYTE
Sbjct:   72 GRALPDARDGLKPVHRRILYAMNGLSLKPTTSHRKCARVVGEVLGKYHPHGDMAVYDALVRLAQTFSTGTPLIDGHGNFGSIDNDPAAAMRYTE 165

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BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: L8LYI5_9CYAN (DNA gyrase subunit A n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LYI5_9CYAN)

HSP 1 Score: 177 bits (448), Expect = 1.050e-49
Identity = 84/94 (89.36%), Postives = 85/94 (90.43%), Query Frame = 0

Query:    1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 94
            GRALPDARDGLKPVHRRILYAMY LGL PE   RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct:   31 GRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot

BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6P0LFB3_9CYAN	2.260e-54	86.17	DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1...	[more]
A0A6H5KKP9_9PHAE	1.380e-53	93.62	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectoca...	[more]
A0A7S2XV43_9STRA	1.210e-52	85.11	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
UPI001A0E7CCB	7.770e-51	81.91	DNA gyrase subunit A n=1 Tax=Synechococcales cyano...	[more]
UPI0019AA5F91	1.720e-50	84.04	DNA gyrase subunit A n=1 Tax=Gloeobacterales cyano...	[more]
A0A0G4ESH9_VITBC	2.170e-50	89.36	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrel...	[more]
A0A836CKD9_9STRA	3.630e-50	89.36	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribon...	[more]
A0A838VWQ0_9NOST	4.610e-50	86.17	DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1...	[more]
A0A7S2R192_9STRA	7.120e-50	86.17	Hypothetical protein (Fragment) n=1 Tax=Eucampia a...	[more]
L8LYI5_9CYAN	1.050e-49	89.36	DNA gyrase subunit A n=1 Tax=Xenococcus sp. PCC 73...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002205	DNA topoisomerase, type IIA, subunit A/C-terminal	PFAM	PF00521	DNA_topoisoIV	coord: 2..94 e-value: 2.0E-47 score: 162.0
IPR013758	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	GENE3D	3.90.199.10		coord: 1..94 e-value: 6.6E-53 score: 181.9
None	No IPR available	PANTHER	PTHR43493	FAMILY NOT NAMED	coord: 1..94
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 1..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig101327	contig	H-elongata_contig101327:567..2018 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig101327.117.1	mRNA_H-elongata_contig101327.117.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig101327 567..2018 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig101327.117.1 ID=prot_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPH
GDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002205	Topo_IIA_A/C
IPR013758	Topo_IIA_A/C_ab
IPR013760	Topo_IIA-like_dom_sf