mRNA_H-elongata_contig101327.117.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6P0LFB3_9CYAN (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Moorena sp. SIO3H5 TaxID=2607834 RepID=A0A6P0LFB3_9CYAN) HSP 1 Score: 174 bits (440), Expect = 2.260e-54 Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAM+ LGL+P+ RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGS+DNDP AAMRYTE
Sbjct: 31 GRALPDARDGLKPVHRRILYAMHELGLSPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTE 124
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.380e-53 Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPD RDGLKPVHRRILYAMYGL LNPE +HRKCARVVGEVLGKYHPHGD+AVYDALVRMAQDFVMSAPLI GHGNFGSIDNDPAAAMRYTE
Sbjct: 188 GRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRKCARVVGEVLGKYHPHGDMAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTE 281
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2XV43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV43_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.210e-52 Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDG+KPVHRRILYAM+ LGL PE +RKCARVVGEVLGK+HPHGD AVYDALVRMAQDFVMS L+ GHGNFGSIDNDP AAMRYTE
Sbjct: 43 GRALPDARDGMKPVHRRILYAMHQLGLRPEGGYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFVMSEVLVKGHGNFGSIDNDPPAAMRYTE 136
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI001A0E7CCB (DNA gyrase subunit A n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A0E7CCB) HSP 1 Score: 168 bits (426), Expect = 7.770e-51 Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAM+ LGL P+ RKCARVVG+V+GKYHPHGD AVYDALVRMAQDF M PL++GHGNFGS+DNDP AAMRYTE
Sbjct: 26 GRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLPLVDGHGNFGSVDNDPPAAMRYTE 119
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: UPI0019AA5F91 (DNA gyrase subunit A n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019AA5F91) HSP 1 Score: 171 bits (433), Expect = 1.720e-50 Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAM+ LGLNP+ +RKCARVVG+VLGKYHPHGD AVYDALVR+AQDF +PLI GHGNFGS+DNDPAAAMRYTE
Sbjct: 26 GRALPDARDGLKPVHRRILYAMHELGLNPDRPYRKCARVVGDVLGKYHPHGDTAVYDALVRLAQDFSTRSPLIAGHGNFGSVDNDPAAAMRYTE 119
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC) HSP 1 Score: 179 bits (454), Expect = 2.170e-50 Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRIL+AM GL L+PESS RKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMS PL+NGHGNFGS+D DP AAMRYTE
Sbjct: 48 GRALPDARDGLKPVHRRILWAMQGLNLSPESSFRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSGPLVNGHGNFGSVDGDPPAAMRYTE 141
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.630e-50 Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPD RDGLKPVHRRILYAM+GLGL PES +RKCARVVGEVLGK+HPHGDVAVYDALVRMAQDFVM+APLI GHGNFGSID DP AAMRYTE
Sbjct: 10 GRALPDVRDGLKPVHRRILYAMHGLGLQPESGYRKCARVVGEVLGKFHPHGDVAVYDALVRMAQDFVMAAPLIAGHGNFGSIDADPPAAMRYTE 103
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A838VWQ0_9NOST (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VWQ0_9NOST) HSP 1 Score: 171 bits (432), Expect = 4.610e-50 Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAM+ LGL + RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct: 31 GRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: A0A7S2R192_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R192_9STRA) HSP 1 Score: 172 bits (436), Expect = 7.120e-50 Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAM GL L P +SHRKCARVVGEVLGKYHPHGD+AVYDALVR+AQ F PLI+GHGNFGSIDNDPAAAMRYTE
Sbjct: 72 GRALPDARDGLKPVHRRILYAMNGLSLKPTTSHRKCARVVGEVLGKYHPHGDMAVYDALVRLAQTFSTGTPLIDGHGNFGSIDNDPAAAMRYTE 165
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Match: L8LYI5_9CYAN (DNA gyrase subunit A n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LYI5_9CYAN) HSP 1 Score: 177 bits (448), Expect = 1.050e-49 Identity = 84/94 (89.36%), Postives = 85/94 (90.43%), Query Frame = 1 Query: 1 GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHGDVAVYDALVRMAQDFVMSAPLINGHGNFGSIDNDPAAAMRYTE 282
GRALPDARDGLKPVHRRILYAMY LGL PE RKCARVVGEVLGKYHPHGD AVYDALVRMAQDF M +PLINGHGNFGSIDNDP AAMRYTE
Sbjct: 31 GRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTE 124 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101327.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101327.117.1 >prot_H-elongata_contig101327.117.1 ID=prot_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp GRALPDARDGLKPVHRRILYAMYGLGLNPESSHRKCARVVGEVLGKYHPHback to top mRNA from alignment at H-elongata_contig101327:567..2018+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101327.117.1 ID=mRNA_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1452bp|location=Sequence derived from alignment at H-elongata_contig101327:567..2018+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101327:567..2018+ >mRNA_H-elongata_contig101327.117.1 ID=mRNA_H-elongata_contig101327.117.1|Name=mRNA_H-elongata_contig101327.117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig101327:567..2018+ (Himanthalia elongata Himel1 dioecious)back to top |