mRNA_H-elongata_contig101322.116.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101322.116.1
Unique NamemRNA_H-elongata_contig101322.116.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A7S3Y074_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y074_HETAK)

HSP 1 Score: 155 bits (391), Expect = 3.640e-45
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            AKRYG+KR+FGFVDVYKEEMPPEHVRKIIRDHGDMT+KKFRHDKRVYLGALK+VPHAVYKL+ENMPMPWE VRNV+V
Sbjct:   27 AKRYGEKRRFGFVDVYKEEMPPEHVRKIIRDHGDMTAKKFRHDKRVYLGALKYVPHAVYKLLENMPMPWEQVRNVKV 103
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BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.680e-44
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            AKRYGQKRKFGFVDVYKEEMP EHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV
Sbjct:  138 AKRYGQKRKFGFVDVYKEEMPAEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 214
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BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A078JR71_BRANA (BnaCnng61100D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078JR71_BRANA)

HSP 1 Score: 144 bits (363), Expect = 2.650e-42
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            +KRYG KRKFGFV+  KE+MPPEHVRKIIRDHGDM+SKKFRHDKRVYLGALKFVPHAV+KL+ENMPMPWE VR+V+V
Sbjct:   63 SKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKV 139
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 154 bits (389), Expect = 7.220e-42
Identity = 69/77 (89.61%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            AK+YG+K+KFGFVDVYKE+MPPEHVRKII+DHGDMTSKKFRHDKRV+LGALKFVPHAVYKL+ENMPMPWEAVRNV+V
Sbjct:   70 AKKYGEKKKFGFVDVYKEDMPPEHVRKIIKDHGDMTSKKFRHDKRVFLGALKFVPHAVYKLLENMPMPWEAVRNVKV 146
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A1R3KSZ0_COCAP (Pre-mRNA-processing-splicing factor 8 (Fragment) n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3KSZ0_COCAP)

HSP 1 Score: 144 bits (363), Expect = 7.300e-42
Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            +KRYG KRKFGFV+  KE+MPPEHVRKIIRDHGDM+SKK+RHDKRVYLGALKF+PHAVYKL+ENMPMPWE VR+V+V
Sbjct:   54 SKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKV 130
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A314ZFU1_PRUYE (Pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZFU1_PRUYE)

HSP 1 Score: 142 bits (359), Expect = 1.010e-41
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            +KRY  KRKFGFV+  KE+MPPEHVRKIIRDHGDM+SKKFRHDKRVYLGALKFVPHAVYKL+ENMPMPWE VR+V+V
Sbjct:   52 SKRYSDKRKFGFVESQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKV 128
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BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A4S8JER4_MUSBA (PRO8NT domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JER4_MUSBA)

HSP 1 Score: 142 bits (358), Expect = 1.130e-41
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
             KRYG KRKFGFV+  KE+MPPEHVRKIIRDHGDM+SKK R+DKRVYLGALKFVPHAVYKL+ENMPMPWE VRNV+V
Sbjct:   60 TKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKHRYDKRVYLGALKFVPHAVYKLLENMPMPWEQVRNVKV 136
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A7C9B3B5_OPUST (PRO8NT domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9B3B5_OPUST)

HSP 1 Score: 141 bits (356), Expect = 1.140e-41
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    4 KRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            KRYG KR FGFV+  KE+MPPEHVRKIIRDHGDM+SKK+RHDKRVYLGALKFVPHAVYKL+ENMPMPWE VR+V+V
Sbjct:    1 KRYGDKRTFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKV 76
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A183GXD1_HELPZ (PRO8NT domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GXD1_HELPZ)

HSP 1 Score: 139 bits (349), Expect = 7.690e-41
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            +KRY +KRKFG VD  KEEMPPEHVRKIIRDHGDMTS+KFRHDKRVYLGALK++PHAV KL+ENMPMPWE +R+V+V
Sbjct:   44 SKRYAEKRKFGVVDTQKEEMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVKV 120
[Close]
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A0C2GGW2_9BILA (PRO8NT domain protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GGW2_9BILA)

HSP 1 Score: 139 bits (349), Expect = 1.070e-40
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231
            +KRY +KRKFG VD  KEEMPPEHVRKIIRDHGDMTS+KFRHDKRVYLGALK++PHAV KL+ENMPMPWE +R+V+V
Sbjct:   14 SKRYAEKRKFGVVDTQKEEMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVKV 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y074_HETAK3.640e-4590.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5K085_9PHAE3.680e-4498.70MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A078JR71_BRANA2.650e-4284.42BnaCnng61100D protein n=1 Tax=Brassica napus TaxID... [more]
A0A836C932_9STRA7.220e-4289.61NUC071 domain-containing protein n=1 Tax=Tribonema... [more]
A0A1R3KSZ0_COCAP7.300e-4283.12Pre-mRNA-processing-splicing factor 8 (Fragment) n... [more]
A0A314ZFU1_PRUYE1.010e-4184.42Pre-mRNA-processing-splicing factor 8A-like n=1 Ta... [more]
A0A4S8JER4_MUSBA1.130e-4184.42PRO8NT domain-containing protein n=1 Tax=Musa balb... [more]
A0A7C9B3B5_OPUST1.140e-4184.21PRO8NT domain-containing protein (Fragment) n=1 Ta... [more]
A0A183GXD1_HELPZ7.690e-4180.52PRO8NT domain-containing protein n=1 Tax=Heligmoso... [more]
A0A0C2GGW2_9BILA1.070e-4080.52PRO8NT domain protein n=1 Tax=Ancylostoma duodenal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101322contigH-elongata_contig101322:1312..1542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue5.8e-38
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPROCT domain
Ec32 orthologEc-04_005590.5
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.223168-CDS-H-elongata_contig101322:1311..15421622929553.223168-CDS-H-elongata_contig101322:1311..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101322 1312..1542 +
1691679067.1024516-CDS-H-elongata_contig101322:1311..15421691679067.1024516-CDS-H-elongata_contig101322:1311..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101322 1312..1542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101322.116.1prot_H-elongata_contig101322.116.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101322 1312..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101322.116.1

>prot_H-elongata_contig101322.116.1 ID=prot_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGA
LKFVPHAVYKLMENMPMPWEAVRNVRV
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mRNA from alignment at H-elongata_contig101322:1312..1542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101322.116.1 ID=mRNA_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig101322:1312..1542+ (Himanthalia elongata Himel1 dioecious)
GCGAAACGTTACGGACAAAAGCGGAAGTTCGGTTTCGTGGACGTGTACAA
AGAGGAGATGCCCCCGGAGCACGTTCGGAAAATTATCCGGGATCATGGAG
ACATGACTTCCAAGAAGTTCAGGCACGACAAGCGAGTCTACTTGGGAGCG
CTCAAGTTCGTGCCTCACGCGGTGTACAAGTTGATGGAAAACATGCCAAT
GCCCTGGGAGGCCGTCCGCAACGTTAGGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig101322:1312..1542+

>mRNA_H-elongata_contig101322.116.1 ID=mRNA_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig101322:1312..1542+ (Himanthalia elongata Himel1 dioecious)
GCGAAACGTTACGGACAAAAGCGGAAGTTCGGTTTCGTGGACGTGTACAA
AGAGGAGATGCCCCCGGAGCACGTTCGGAAAATTATCCGGGATCATGGAG
ACATGACTTCCAAGAAGTTCAGGCACGACAAGCGAGTCTACTTGGGAGCG
CTCAAGTTCGTGCCTCACGCGGTGTACAAGTTGATGGAAAACATGCCAAT
GCCCTGGGAGGCCGTCCGCAACGTTAGGGTAGCGAAACGTTACGGACAAA
AGCGGAAGTTCGGTTTCGTGGACGTGTACAAAGAGGAGATGCCCCCGGAG
CACGTTCGGAAAATTATCCGGGATCATGGAGACATGACTTCCAAGAAGTT
CAGGCACGACAAGCGAGTCTACTTGGGAGCGCTCAAGTTCGTGCCTCACG
CGGTGTACAAGTTGATGGAAAACATGCCAATGCCCTGGGAGGCCGTCCGC
AACGTTAGGGTA
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