mRNA_H-elongata_contig101322.116.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A7S3Y074_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y074_HETAK) HSP 1 Score: 155 bits (391), Expect = 3.640e-45 Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 AKRYG+KR+FGFVDVYKEEMPPEHVRKIIRDHGDMT+KKFRHDKRVYLGALK+VPHAVYKL+ENMPMPWE VRNV+V Sbjct: 27 AKRYGEKRRFGFVDVYKEEMPPEHVRKIIRDHGDMTAKKFRHDKRVYLGALKYVPHAVYKLLENMPMPWEQVRNVKV 103
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE) HSP 1 Score: 160 bits (406), Expect = 3.680e-44 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 AKRYGQKRKFGFVDVYKEEMP EHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV Sbjct: 138 AKRYGQKRKFGFVDVYKEEMPAEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 214
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A078JR71_BRANA (BnaCnng61100D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078JR71_BRANA) HSP 1 Score: 144 bits (363), Expect = 2.650e-42 Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 +KRYG KRKFGFV+ KE+MPPEHVRKIIRDHGDM+SKKFRHDKRVYLGALKFVPHAV+KL+ENMPMPWE VR+V+V Sbjct: 63 SKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKV 139
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA) HSP 1 Score: 154 bits (389), Expect = 7.220e-42 Identity = 69/77 (89.61%), Postives = 77/77 (100.00%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 AK+YG+K+KFGFVDVYKE+MPPEHVRKII+DHGDMTSKKFRHDKRV+LGALKFVPHAVYKL+ENMPMPWEAVRNV+V Sbjct: 70 AKKYGEKKKFGFVDVYKEDMPPEHVRKIIKDHGDMTSKKFRHDKRVFLGALKFVPHAVYKLLENMPMPWEAVRNVKV 146
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A1R3KSZ0_COCAP (Pre-mRNA-processing-splicing factor 8 (Fragment) n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3KSZ0_COCAP) HSP 1 Score: 144 bits (363), Expect = 7.300e-42 Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 +KRYG KRKFGFV+ KE+MPPEHVRKIIRDHGDM+SKK+RHDKRVYLGALKF+PHAVYKL+ENMPMPWE VR+V+V Sbjct: 54 SKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKV 130
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A314ZFU1_PRUYE (Pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZFU1_PRUYE) HSP 1 Score: 142 bits (359), Expect = 1.010e-41 Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 +KRY KRKFGFV+ KE+MPPEHVRKIIRDHGDM+SKKFRHDKRVYLGALKFVPHAVYKL+ENMPMPWE VR+V+V Sbjct: 52 SKRYSDKRKFGFVESQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKV 128
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A4S8JER4_MUSBA (PRO8NT domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JER4_MUSBA) HSP 1 Score: 142 bits (358), Expect = 1.130e-41 Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 KRYG KRKFGFV+ KE+MPPEHVRKIIRDHGDM+SKK R+DKRVYLGALKFVPHAVYKL+ENMPMPWE VRNV+V Sbjct: 60 TKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKHRYDKRVYLGALKFVPHAVYKLLENMPMPWEQVRNVKV 136
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A7C9B3B5_OPUST (PRO8NT domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9B3B5_OPUST) HSP 1 Score: 141 bits (356), Expect = 1.140e-41 Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1 Query: 4 KRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 KRYG KR FGFV+ KE+MPPEHVRKIIRDHGDM+SKK+RHDKRVYLGALKFVPHAVYKL+ENMPMPWE VR+V+V Sbjct: 1 KRYGDKRTFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKV 76
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A183GXD1_HELPZ (PRO8NT domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GXD1_HELPZ) HSP 1 Score: 139 bits (349), Expect = 7.690e-41 Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 +KRY +KRKFG VD KEEMPPEHVRKIIRDHGDMTS+KFRHDKRVYLGALK++PHAV KL+ENMPMPWE +R+V+V Sbjct: 44 SKRYAEKRKFGVVDTQKEEMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVKV 120
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Match: A0A0C2GGW2_9BILA (PRO8NT domain protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GGW2_9BILA) HSP 1 Score: 139 bits (349), Expect = 1.070e-40 Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1 Query: 1 AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLMENMPMPWEAVRNVRV 231 +KRY +KRKFG VD KEEMPPEHVRKIIRDHGDMTS+KFRHDKRVYLGALK++PHAV KL+ENMPMPWE +R+V+V Sbjct: 14 SKRYAEKRKFGVVDTQKEEMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVKV 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101322.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101322.116.1 >prot_H-elongata_contig101322.116.1 ID=prot_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp AKRYGQKRKFGFVDVYKEEMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGAback to top mRNA from alignment at H-elongata_contig101322:1312..1542+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101322.116.1 ID=mRNA_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig101322:1312..1542+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101322:1312..1542+ >mRNA_H-elongata_contig101322.116.1 ID=mRNA_H-elongata_contig101322.116.1|Name=mRNA_H-elongata_contig101322.116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig101322:1312..1542+ (Himanthalia elongata Himel1 dioecious)back to top |