mRNA_H-elongata_contig101255.111.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig101255.111.1
Unique Name	mRNA_H-elongata_contig101255.111.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.110e-50
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1

Query:    7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            P YVVVK +GY+G +WS ++R R C+PI+P+ T+W       +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:  144 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.540e-48
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1

Query:    7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            P YVVVK +GY+G +WS ++R R C+PI+P+ T+W       +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:  318 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 6.470e-48
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1

Query:    7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            P YVVVK +GY+G +WS ++R R C+PI+P+ T+W       +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:   35 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.760e-45
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 1

Query:    7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEE 384
            P YVVVK +GY+G +WS ++R R C+PI+P+ T+W       +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE
Sbjct: 1449 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.230e-35
Identity = 66/92 (71.74%), Postives = 72/92 (78.26%), Query Frame = 1

Query:  121 GQDNE-GGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            GQ  E GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:    4 GQKGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.520e-34
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1

Query:  133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.650e-34
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1

Query:  109 WTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            W+   +D  GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:   67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 6.700e-34
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1

Query:  133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+ S +K R QEE RL
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.130e-33
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1

Query:  133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEE 384
            +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90

[Close]

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 8.790e-33
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1

Query:  133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
            +GGT  RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK   DL+VEPM FDR+  LG+   +KAR QEE RL
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot

BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUS2_9PHAE	8.110e-50	63.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	4.540e-48	63.57	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	6.470e-48	63.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L976_9PHAE	1.760e-45	63.49	ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ...	[more]
A0A6H5KSF1_9PHAE	5.230e-35	71.74	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	4.520e-34	72.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	4.650e-34	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K214_9PHAE	6.700e-34	72.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFN2_9PHAE	1.130e-33	72.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	8.790e-33	72.41	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig101255	contig	H-elongata_contig101255:1268..1660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	85.5
Seed ortholog evalue	1.5e-14
Seed eggNOG ortholog	400682.PAC_15699109
EggNOG free text desc.	Helicase
EggNOG OGs	39K8F@33154,3C3GY@33208,COG0507@1,KOG0987@2759
COG Functional cat.	D
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	393
Cds size	297
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929552.61282-CDS-H-elongata_contig101255:1267..1564	1622929552.61282-CDS-H-elongata_contig101255:1267..1564	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig101255 1268..1564 +
1691679066.7434044-CDS-H-elongata_contig101255:1267..1564	1691679066.7434044-CDS-H-elongata_contig101255:1267..1564	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig101255 1268..1564 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929552.6250882-UTR-H-elongata_contig101255:1564..1660	1622929552.6250882-UTR-H-elongata_contig101255:1564..1660	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig101255 1565..1660 +
1691679066.7549825-UTR-H-elongata_contig101255:1564..1660	1691679066.7549825-UTR-H-elongata_contig101255:1564..1660	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig101255 1565..1660 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig101255.111.1	prot_H-elongata_contig101255.111.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig101255 1268..1564 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig101255:1268..1660+
coding sequence from alignment at H-elongata_contig101255:1268..1660+

protein sequence of mRNA_H-elongata_contig101255.111.1

>prot_H-elongata_contig101255.111.1 ID=prot_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
AQPRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTT
RTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*

mRNA from alignment at H-elongata_contig101255:1268..1660+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig101255.111.1 ID=mRNA_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig101255:1268..1660+ (Himanthalia elongata Himel1 dioecious)
GCGCAGCCGCGTTACGTGGTAGTGAAACTGGATGGCTATACAGGACCACA
GTGGTCGGACGAGGATCGGTGTCGAGATTGTATTCCAATCGCTCCCATTC
AGACCTCCTGGACTGCACCAGGTCAAGACAATGAAGGTGGTACCACGACC
AGAACTCAGCTCCCACTCAAGTTATTCTGGGCTATCACCATGCACAAGAG
TCAAGGCCAGACGTTGTCAAAGGCCGTGATCGATTTGGGGGAAAAGGAAG
CGTGCACTGGATTGACTTCCGTTTGCTTGAGTCACGCTAAGGAGTAGAGT
GATTTGCTGGTAGAACCAATGCCGTTCGATCGTCTCTCAAGGTTAGGTGA
CAAGTCTGTTCTCAAGGCACGTCGGCAGGAAGAAGACCGCCTG

Coding sequence (CDS) from alignment at H-elongata_contig101255:1268..1660+

>mRNA_H-elongata_contig101255.111.1 ID=mRNA_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig101255:1268..1660+ (Himanthalia elongata Himel1 dioecious)
GCGCAGCCGCGTTACGTGGTAGTGAAACTGGATGGCTATACAGGACCACA
GTGGTCGGACGAGGATCGGTGTCGAGATTGTATTCCAATCGCTCCCATTC
AGACCTCCTGGACTGCACCAGGTCAAGACAATGAAGGTGGTACCACGACC
AGAACTCAGCTCCCACTCAAGTTATTCTGGGCTATCACCATGCACAAGAG
TCAAGGCCAGACGTTGTCAAAGGCCGTGATCGATTTGGGGGAAAAGGAAG
CGTGCACTGGATTGACTTCCGTTTGCTTGAGTCACGCTAAGGAGTAGGCG
CAGCCGCGTTACGTGGTAGTGAAACTGGATGGCTATACAGGACCACAGTG
GTCGGACGAGGATCGGTGTCGAGATTGTATTCCAATCGCTCCCATTCAGA
CCTCCTGGACTGCACCAGGTCAAGACAATGAAGGTGGTACCACGACCAGA
ACTCAGCTCCCACTCAAGTTATTCTGGGCTATCACCATGCACAAGAGTCA
AGGCCAGACGTTGTCAAAGGCCGTGATCGATTTGGGGGAAAAGGAAGCGT
GCACTGGATTGACTTCCGTTTGCTTGAGTCACGCTAAGGAGTAG