mRNA_H-elongata_contig101255.111.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 169 bits (428), Expect = 8.110e-50 Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1 Query: 7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
P YVVVK +GY+G +WS ++R R C+PI+P+ T+W +GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 144 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.540e-48 Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1 Query: 7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
P YVVVK +GY+G +WS ++R R C+PI+P+ T+W +GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 318 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 6.470e-48 Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1 Query: 7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
P YVVVK +GY+G +WS ++R R C+PI+P+ T+W +GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 35 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.760e-45 Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 1 Query: 7 PRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEE 384
P YVVVK +GY+G +WS ++R R C+PI+P+ T+W +GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE
Sbjct: 1449 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 126 bits (316), Expect = 5.230e-35 Identity = 66/92 (71.74%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 121 GQDNE-GGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
GQ E GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 4 GQKGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.520e-34 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
+GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.650e-34 Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1 Query: 109 WTAPGQDNEGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
W+ +D GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE) HSP 1 Score: 126 bits (316), Expect = 6.700e-34 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
+GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ S +K R QEE RL
Sbjct: 4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.130e-33 Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1 Query: 133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEE 384
+GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE
Sbjct: 7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE) HSP 1 Score: 125 bits (315), Expect = 8.790e-33 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 133 EGGTTTRTQLPLKLFWAITMHKSQGQTLSKAVIDLGEKEACTGLTSVCLSHAKE*SDLLVEPMPFDRLSRLGDKSVLKARRQEEDRL 393
+GGT RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLT VCLS AK DL+VEPM FDR+ LG+ +KAR QEE RL
Sbjct: 7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101255.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101255.111.1 >prot_H-elongata_contig101255.111.1 ID=prot_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp AQPRYVVVKLDGYTGPQWSDEDRCRDCIPIAPIQTSWTAPGQDNEGGTTTback to top mRNA from alignment at H-elongata_contig101255:1268..1660+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101255.111.1 ID=mRNA_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig101255:1268..1660+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101255:1268..1660+ >mRNA_H-elongata_contig101255.111.1 ID=mRNA_H-elongata_contig101255.111.1|Name=mRNA_H-elongata_contig101255.111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig101255:1268..1660+ (Himanthalia elongata Himel1 dioecious)back to top |