mRNA_H-elongata_contig10104.97.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10104.97.1 vs. uniprot
Match: D8LJB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB2_ECTSI) HSP 1 Score: 441 bits (1133), Expect = 1.770e-133 Identity = 368/956 (38.49%), Postives = 474/956 (49.58%), Query Frame = 3 Query: 360 QRNTGALLIAHNGLAKLLAARLPWLIGGVLDAPRLLSHLSRICRDGLHQLEAQLSGAEIGSASGVEE--------------TKQANKFGKLLASFCTLMAGLLRYLGPECPPLERRRAYELLAKTAAVVYPGVIALRRAERNVPASAAGAIRASSLSAVVAERLYPQTTEAFLSICGPPPCHSHRAVS-----NSSRQTPTASND------------------------------TCRCFEQPDPTEKGEGGRLPSRRGHDPWESLEALRPARPQGGSRSHGTAND-----SRVRAVNAALD--RNGGNEGDGNCLPGADPLGAVLLLCEALRSEGKLYGVVTA-------RLLECCTWISDYLAFLFQKWVETATVENGRDLSARGSADGDDFVGDVVSTALCDETGDALGLFVARLALTEDFEQAQVKLVEGCVCHPHPLCREIWLRAFKVFLRMCDPTAQSSCVQTFTDAAIDPRLSSRHRRRLARALSA-CTA-----------------------PRALDAAAYGRLRQILLSRLREEHDNISEGGNVAAIEVSDEFARDPASAVLGSKSTRELRRACALELLSGV-SMRSFAS------DDEVLSASSAALAE-AAVVAGLRDAGEKSCVLSASDAGSSNSSRKRNREESLAAAAKFLAVS-SGSGNLAPRKTGHVQGRSIAKTEEATRVAGRALGIALTGDGSTFLTMTHVSGHPLAAITVLMAKIDPSKLPRLCSLIVESAEDGRVNGEGLLALAEGLSSMG-RQSFPSNPVDATIWEATMKNGFGLLFDCG-LWPVATVAMQALEE--------IARHADPRTAELLPRLLPRSRLSSFKARLSKKVATLEGGKLIELERLRKRGWAEWELFASAASAFAEETRTRSSRSPTSASIHPSGQDRQVVLRKGGNLSAMAGLLSSTIVGIELQSDQAGGGVRITLRGK*W 2909
Q NT ALL+AHN LAKLL PWL+GGV+DAPRLLS L I RDGL QL+ L+ A+ A+ EE T KFGKLLA+F T MA LLR+LGPECPP ERR A+ L AK A VYPG++A RA V AA A V +YP+ EAF+S PPC + N SR PT+S +CRC+E G L RR HDPWE+LEALRP + D SR +AA D R+ +E + + DPLGAVLLLCE LR + YG A R CC W+ D+LA LF WV++A AL E LG+FV R A+ +F++AQV+L+EGC CHPHP+CRE+W+ A KVFL CD AQ +C+Q+ T+AA+DPR+S R RRRL RAL+A C A P L A G L Q LSRLR E + G+ ++I S ACAL+LL + S RSF+ DDE L+A+SA+ A +A A L + V GSS R+R E++L A A+FLA A + G + A R R LG LT G + +S L+AIT L+A+ DP +LP+LCS++ A DGRV GE +LALAEGLSS+G RQ PS I GF L +C W T+ + +AR DP LLPR +P RL++FK RL ++ L+GG I+LE +R+RG AE + ++AA A A + T S GQ RQ+VL++GG+LSA+AGLL++T+ GI L S++ GGGV +TL+G W
Sbjct: 169 QNNTPALLMAHNALAKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLDQLKIALAQADAKHAASGEEHSCVNRSAGGGAGDTAHLKKFGKLLATFGTRMACLLRHLGPECPPRERRAAFRLYAKATASVYPGLLASLRARDFVGDDAATA------GGVAGCIIYPKAVEAFVSTTDEPPCCQSGVSATGRGENGSRSPPTSSRKVGPLVDAGGSSCAAFSSAGGVAERERNLRPSCRCYEGTTT------GPLSGRR-HDPWEALEALRPTPNRXXXXXXXXIADPSRTSSRSSDASAATDDSRDAVHEPESS----VDPLGAVLLLCEFLR---RGYGTAPAAGGARGPRREACCAWVLDHLAALFPGWVDSAAXXXXXXXXXXX--------------ALTGEVSATLGVFVCRRAMDGEFQEAQVQLIEGCSCHPHPVCREVWVGALKVFLGRCDSAAQEACIQSLTNAALDPRVSRRCRRRLGRALAAVCVAMTTGVPLADSGSPTGGPSASAAVPLLLPRARAG-LFQACLSRLRGEQLDEDSSGD-SSIRAS--------GGRXXXXXXXXXXXACALDLLRALPSWRSFSGVNGGGHDDEELTAASASFARTSATTADLLRSEAARGVRGEHSPGSSL--RQREEEDNLVAGARFLAARPQQERKQAAGAEVDMGGEAEGGLGAAAREVARELGGMLTSSGLS----GGLSERALSAITRLVAREDPDRLPQLCSVVAREAVDGRVGGEAVLALAEGLSSVGQRQPLPSKGRAGNI-------GFNRLEECPPRWVRGTLRFSLVARRHGSHGNAVARCVDPSITALLPRQIPEHRLAAFKGRLGRRTVYLDGGGPIKLEEIRERGLAETRVLSAAAVALAAKRGTTESE----------GQTRQIVLKEGGDLSALAGLLANTVTGIRLLSEREGGGVCLTLKGGAW 1057
BLAST of mRNA_H-elongata_contig10104.97.1 vs. uniprot
Match: A0A6H5JIM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM5_9PHAE) HSP 1 Score: 288 bits (736), Expect = 2.340e-79 Identity = 255/664 (38.40%), Postives = 320/664 (48.19%), Query Frame = 3 Query: 360 QRNTGALLIAHNGLAKLLAARLPWLIGGVLDAPRLLSHLSRICRDGLHQLEAQLSGAEIGSASGVEETKQAN--------------KFGKLLASFCTLMAGLLRYLGPECPPLERRRAYELLAKTAAVVYPGVIALRRAERNVPASAAGAIRASSLSAVVAERLYPQTTEAFLSICGPPPCHSHRAVS-----NSSRQTPTASND------------------------------TCRCFEQPDPTEKGEGGRLPSRRGHDPWESLEALRPA-RPQGGSRSHGTANDSRVRAVNAALDRNGGNEGDGNCLPGADPLGAVLLLCEALRSEGKLYGVVTA-------RLLECCTWISDYLAFLFQKWVETATVENGRDLSARGSADGDDFVGDVVSTALCDETGDALGLFVARLALTEDFEQAQVKLVEGCVCHPHPLCREIWLRAFK----VFLRMCDPTAQSSCVQTFTDAAIDPRLSSRHRRRLARALSA-CTA----------------PRALDAA------AYGRLRQILLSRLR-EEHDNISEGGNVAAIEVSDEFARDPASAVLGSKSTRELRRACALELLSGV-SMRSFAS------DDEVLSASSAALAE-AAVVAGLRDAGEKSCVLSASDAGSSNSSRKRNREESLAAAAKFLAV 2072
Q NT ALL+AHN L+KLL PWL+GGV+DAPRLLS L I RDGL QL+ L+ A+ +A+ EE + N KFGKLLA+F T MA LLR+LGPEC P +RR A+ L AK A VYPG++A RA V A ++ V +YP+ EAFLS PPC + N+SR PT S +CRC+E G L +R HDPWE+LEALRP RP + T SR + A D + D P DPLGAVLLLCE LR + YG A R CC W+ D+LA LF WV++A G+ G A S AL E LG+ V R A+ +F++AQV+L+EGC CHPHP+CRE+W+ A K + CDP AQ C+Q+ +AA+DPR+S R RRRL RAL+A C A P A AA A L Q LSRLR E+ D S G D R AS ACAL+LL + S RSF+ DD+ L+ +S + A +A A L + V GSS R+R EE+L A A+FLA
Sbjct: 163 QNNTPALLMAHNALSKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLGQLDIALAQADAKNAASSEEPRSGNRSAGGGAGDTAHLKKFGKLLATFGTRMACLLRHLGPECRPRKRREAFRLYAKATASVYPGLLASLRARDVVGDDA------TTTGGVAGCIIYPKAVEAFLSTTDEPPCCQSGVSAIGHGENASRSPPTNSRKASPLVDAGGSSCAAFSSAGRVAERERNLRRSCRCYEG------ATTGPLSGQR-HDPWEALEALRPPNRPP--LITDPTRTSSRSSDSSTATDDSRDAAHDLQSSPAVDPLGAVLLLCEFLR---RGYGAAPAAGGARGPRRETCCAWVLDHLAALFPGWVDSAAGGGGQ-----GGA----------SAALAGEVSATLGVVVCRRAMDGEFQEAQVQLIEGCSCHPHPVCREVWVGALKGKTDAGWKECDPAAQEVCIQSLANAALDPRVSPRCRRRLGRALAAVCVATTTGAPPTDSGSPAGGPTASAAAPLLLPRARAGLFQACLSRLRGEQLDGDSSG---------DSSIR--ASGXXXXXXXXXXXXACALDLLRALPSCRSFSGVHGGSEDDKELAVASVSFARTSATTADLLRSEAARGVGGEPSPGSSL--RQREEEENLVAGARFLAA 780 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10104.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10104.97.1 >prot_H-elongata_contig10104.97.1 ID=prot_H-elongata_contig10104.97.1|Name=mRNA_H-elongata_contig10104.97.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=765bp MAGLLRYLGPECPPLERRRAYELLAKTAAVVYPGVIALRRAERNVPASAAback to top mRNA from alignment at H-elongata_contig10104:155..7918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10104.97.1 ID=mRNA_H-elongata_contig10104.97.1|Name=mRNA_H-elongata_contig10104.97.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7764bp|location=Sequence derived from alignment at H-elongata_contig10104:155..7918+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10104:155..7918+ >mRNA_H-elongata_contig10104.97.1 ID=mRNA_H-elongata_contig10104.97.1|Name=mRNA_H-elongata_contig10104.97.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4590bp|location=Sequence derived from alignment at H-elongata_contig10104:155..7918+ (Himanthalia elongata Himel1 dioecious)back to top |