mRNA_H-elongata_contig100962.89.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100962.89.1
Unique NamemRNA_H-elongata_contig100962.89.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100962.89.1 vs. uniprot
Match: D8LDF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.010e-39
Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 QVDALRMAVFEASTRAEQTAEQC----------------KKSAVDAAVREIARDREAFAEGRREALKRIGELEDTLEIALRAAGGVHKQLMGLGRSCEDLGKTSVHLSVAAQEAPAQ 303
            QV ALRMAVFEASTRAEQTAEQ                 K+ AV+AAVREIA+DREAFAEGRREA+KRIGELED LEIAL+AAGGVH++L+ LG SCEDLGKTSVHLSVAAQEAPA+
Sbjct:   99 QVAALRMAVFEASTRAEQTAEQLIKDSASFVHRGVLLQYKRDAVEAAVREIAQDREAFAEGRREAVKRIGELEDALEIALKAAGGVHRKLLELGLSCEDLGKTSVHLSVAAQEAPAE 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100962.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF6_ECTSI1.010e-3973.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100962contigH-elongata_contig100962:753..2020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100962.89.1prot_H-elongata_contig100962.89.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100962 753..2002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.844014-CDS-H-elongata_contig100962:752..8951622929550.844014-CDS-H-elongata_contig100962:752..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 753..895 -
1691679065.7344937-CDS-H-elongata_contig100962:752..8951691679065.7344937-CDS-H-elongata_contig100962:752..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 753..895 -
1622929550.8634665-CDS-H-elongata_contig100962:1330..14241622929550.8634665-CDS-H-elongata_contig100962:1330..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 1331..1424 -
1691679065.7474422-CDS-H-elongata_contig100962:1330..14241691679065.7474422-CDS-H-elongata_contig100962:1330..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 1331..1424 -
1622929550.8786306-CDS-H-elongata_contig100962:1954..20021622929550.8786306-CDS-H-elongata_contig100962:1954..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 1955..2002 -
1691679065.7561336-CDS-H-elongata_contig100962:1954..20021691679065.7561336-CDS-H-elongata_contig100962:1954..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100962 1955..2002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.8925314-UTR-H-elongata_contig100962:2002..20201622929550.8925314-UTR-H-elongata_contig100962:2002..2020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100962 2003..2020 -
1691679065.7655416-UTR-H-elongata_contig100962:2002..20201691679065.7655416-UTR-H-elongata_contig100962:2002..2020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100962 2003..2020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100962.89.1

>prot_H-elongata_contig100962.89.1 ID=prot_H-elongata_contig100962.89.1|Name=mRNA_H-elongata_contig100962.89.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MAVFEASTRAEQTAEQCKKSAVDAAVREIARDREAFAEGRREALKRIGEL
EDTLEIALRAAGGVHKQLMGLGRSCEDLGKTSVHLSVAAQEAPAQ
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mRNA from alignment at H-elongata_contig100962:753..2020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100962.89.1 ID=mRNA_H-elongata_contig100962.89.1|Name=mRNA_H-elongata_contig100962.89.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1268bp|location=Sequence derived from alignment at H-elongata_contig100962:753..2020- (Himanthalia elongata Himel1 dioecious)
CAGGTTGACGCCCTCCGGATGGCGGTGTTCGAGGCTAGCACCCGTGCGGA
ACAGACAGCTGAGCAGGTGGGAGAGTGTATAGGCCCACGAGGGATTATAG
TCGGCGTCGGTGCCCCGTGTTTTGGTTGGAGGCGTGAATCGGGGCACCGT
CTAGGAGACAAGCACTAATGAGGATATAAGTTCAATAGGTAGATACGCTG
GAGAAAGCACGTTCTGTTTTGTTTCTGTGACGTTGGAGTGACTAATGGCT
TAGAGGCGCACCCAGGAAAATCAATTTAAATATATTTTCGGTCCCATAAG
GGTGGGTATTAGCGGGGTTACAAAAGTTTAAATTCCNNNNNNNNNNTATA
TTTAAATCGGGCTCTGATTGGACGAAGACTATGCGTTATTTAGCTTTCTA
CCAATCAGAGCCCGATTTTAATTTAAATCGGCTGGAAATTTTAATTTTTG
TATTTCGATAAGACCCGGCCTAACGCCGTCAGCAAACTGCGCCAGAAGCT
AAAGTATCTCGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGG
GAACGACAACGCCGACAATGACACTGGTATCGGCATCGGCGACCAGTGCA
AGAAAAGCGCCGTAGACGCCGCCGTGCGGGAGATCGCGCGTGACCGTGAG
GCTTTTGCGGAGGGCAGACGAGAAGCCCTCAAACGAATAGGTAAGGCGAC
TCGGCCCGACCATTCAGCTCACCGTAACCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACCCCCCCCCTTCGTCCCCGCCCCGCCGTCCAGCCCCCCT
GGGGCGCGGTCAAGACGAGCGCCGCGTTNNNNNNNNNNCCCATTTCGGGC
ACGCTACCCCCCCCCCCCCCTCTCACCCCATGATGCAGTCCATCCGATTT
GCCTCGGCCTCGTTTGGAAACCCTTCGGTGGTGATCAAACAGGGCGCGGA
TTTAATGTCTTGATACAGACGACGACGATGGATGTCACGGTGTGTTCGGT
ACCACTTCTACCTTCCCCTGTCACCGAGGCATATTGTCAGACCATTGGAC
GAACCACCAGAAGACGAGTAGCGCTCTTTTCCGTTCCGTGCCGGACATTT
CTGTCAAAATTTCGCTGGTCCGAAGGAGAACTCGAGGATACCCTGGAGAT
CGCTCTGAGAGCGGCGGGCGGGGTGCACAAGCAGCTTATGGGGCTCGGCC
GGTCCTGCGAAGACCTGGGCAAGACCAGCGTTCACCTCTCCGTTGCGGCA
CAGGAGGCGCCCGCTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig100962:753..2020-

>mRNA_H-elongata_contig100962.89.1 ID=mRNA_H-elongata_contig100962.89.1|Name=mRNA_H-elongata_contig100962.89.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig100962:753..2020- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGTTCGAGGCTAGCACCCGTGCGGAACAGACAGCTGAGCAGAT
GGCGGTGTTCGAGGCTAGCACCCGTGCGGAACAGACAGCTGAGCAGTGCA
AGAAAAGCGCCGTAGACGCCGCCGTGCGGGAGATCGCGCGTGACCGTGAG
GCTTTTGCGGAGGGCAGACGAGAAGCCCTCAAACGAATAGTGCAAGAAAA
GCGCCGTAGACGCCGCCGTGCGGGAGATCGCGCGTGACCGTGAGGCTTTT
GCGGAGGGCAGACGAGAAGCCCTCAAACGAATAGGAGAACTCGAGGATAC
CCTGGAGATCGCTCTGAGAGCGGCGGGCGGGGTGCACAAGCAGCTTATGG
GGCTCGGCCGGTCCTGCGAAGACCTGGGCAAGACCAGCGTTCACCTCTCC
GTTGCGGCACAGGAGGCGCCCGCTCAGGAGAACTCGAGGATACCCTGGAG
ATCGCTCTGAGAGCGGCGGGCGGGGTGCACAAGCAGCTTATGGGGCTCGG
CCGGTCCTGCGAAGACCTGGGCAAGACCAGCGTTCACCTCTCCGTTGCGG
CACAGGAGGCGCCCGCTCAG
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