mRNA_H-elongata_contig100959.87.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI) HSP 1 Score: 282 bits (721), Expect = 8.520e-93 Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 1 Query: 1 PTEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 453 PTEFNTCVFKLEVKNP P DMPDP+P GTS A GPRRTMNVFSGAMEWCPHG+QVERFE +GGLRPVHDDILIAKLRPGQEI+AE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK E+E +EAEELVAKCPLNVFDIEDLGG KRAKV Sbjct: 132 PTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKV 282
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.990e-62 Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 1 Query: 133 GAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 453 GAMEWCPHG+QVERFE +GGLRPVHDDILIAKLRPGQEI+AE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK E+E +EAEELVAKCPLNVFDIEDLGG KRAKV Sbjct: 178 GAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKV 284
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL) HSP 1 Score: 156 bits (395), Expect = 7.070e-44 Identity = 82/143 (57.34%), Postives = 96/143 (67.13%), Query Frame = 1 Query: 4 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 432 T+ NT VFKL+V PE DP S +V+S +EW P GNQ ERF G +RPVHDDILIAKLRPGQ + E HCRKGIGKDHAKFSPVATASYRL+P V L +IE +A L+ CP+N+FDIED+GG Sbjct: 121 TDENTIVFKLDVTCKFDPEHPKDPTKAIFS---------SVYSRDLEWVPQGNQEERF---GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDVGG 251
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT) HSP 1 Score: 153 bits (386), Expect = 1.380e-42 Identity = 78/143 (54.55%), Postives = 96/143 (67.13%), Query Frame = 1 Query: 4 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 432 T+ NT VFKL+V PE DP S +V+S +EW P GNQ ERF G +RPVH+DIL+AKLRPGQ I E HCRKG+GKDHAKFSPVATASYRL+P V L ++E +A+ LV +C + +FDIED+GG Sbjct: 117 TDENTIVFKLDVTCKFDPEHPKDPTKAIHS---------SVYSRDLEWVPQGNQEERF---GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDIGG 247
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA) HSP 1 Score: 151 bits (382), Expect = 1.800e-42 Identity = 82/153 (53.59%), Postives = 101/153 (66.01%), Query Frame = 1 Query: 4 TEFNTCVFKLEVKNPTRP---EDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 453 T+ NT F L+VK + E PD L S V+SG M W PHG Q + F + ++PVHDDILIAKLRPGQEI C KGIGKDHAKFSPVATA+YRLLP V++ ++ ++A+ LV KCP+NVFDIEDLGG +K+AKV Sbjct: 77 TDKNTLEFTLKVKCEKKKDYKESYPDHLKYEHS---------KVYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNVFDIEDLGG-KKKAKV 219
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.450e-42 Identity = 79/146 (54.11%), Postives = 98/146 (67.12%), Query Frame = 1 Query: 4 TEFNTCVFKLEVK---NPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 432 T+ NT VFKL+V +P P+D L K + V+S +EW P GNQ ERF G +RPVH+DILIAKLRPGQ I E HCRKG+GKDHAKFSPVATASYRL+P V L +E ++A+ LV +C + +FDIED+GG Sbjct: 126 TDENTIVFKLDVTCAYDPAHPKD----LSKAVHAS--------VYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGG 256
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: M4C0R7_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R7_HYAAE) HSP 1 Score: 149 bits (375), Expect = 9.840e-42 Identity = 78/143 (54.55%), Postives = 95/143 (66.43%), Query Frame = 1 Query: 4 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 432 T+ NT VFKL+V P+ + DP +S +V+S +EW P GNQ ERF G +RPV +DILIAKLRPGQ I E HCRKG+GKDHAKFSPVATASYRL+P V L ++E A+ LV +C VFDIED+GG Sbjct: 48 TDENTIVFKLDVTCKFDPDHLKDPTKALSS---------SVYSRDLEWVPQGNQEERF---GLIRPVSEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGVNAKRLVDECRTGVFDIEDIGG 178
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM) HSP 1 Score: 151 bits (382), Expect = 1.230e-41 Identity = 78/143 (54.55%), Postives = 94/143 (65.73%), Query Frame = 1 Query: 4 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 432 T+ NT VFKL+V PE DP S +V+S +EW P GNQ ERF G +RPVH+DILIAKLRPGQ I E HCRKG+GKDHAKFSPVATASYRL+P V ++E +A+ LV C + +FDIED+GG Sbjct: 154 TDENTIVFKLDVTCKYDPEHPKDPTKAIHS---------SVYSRDLEWVPQGNQEERF---GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIEDIGG 284
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.330e-41 Identity = 81/147 (55.10%), Postives = 96/147 (65.31%), Query Frame = 1 Query: 4 TEFNTCVFKLEVK---NPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVA-KCPLNVFDIEDLGG 432 T+ NT VFKL+V +P P+D L +V+S +EW P GNQ ERF G +RPVH+DILIAKLRPGQ I E HCRKG+GKDHAKFSPVATASYRL+P + L + +A +LVA KC L VFDIEDLGG Sbjct: 123 TDENTIVFKLDVTCRFDPAHPQDAAKAL------------HTSVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIEDLGG 254
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.820e-41 Identity = 79/139 (56.83%), Postives = 91/139 (65.47%), Query Frame = 1 Query: 7 EFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIED 423 E NT VF+L + RP D DP P T V+SG EW P G Q ERF GLRP+HDDIL+AKLR GQEI E+HCRKG+GKDHAK+SPVATASYRL P ++L + A ELVA CP+NVFDIED Sbjct: 151 ENNTVVFRLH-RRCVRPADA-DPA--------APPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100959.87.1 >prot_H-elongata_contig100959.87.1 ID=prot_H-elongata_contig100959.87.1|Name=mRNA_H-elongata_contig100959.87.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp PTEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCback to top mRNA from alignment at H-elongata_contig100959:659..2097- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100959.87.1 ID=mRNA_H-elongata_contig100959.87.1|Name=mRNA_H-elongata_contig100959.87.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1439bp|location=Sequence derived from alignment at H-elongata_contig100959:659..2097- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100959:659..2097- >mRNA_H-elongata_contig100959.87.1 ID=mRNA_H-elongata_contig100959.87.1|Name=mRNA_H-elongata_contig100959.87.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig100959:659..2097- (Himanthalia elongata Himel1 dioecious)back to top |