prot_H-elongata_contig100959.87.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100959.87.1
Unique Nameprot_H-elongata_contig100959.87.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length155
Homology
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 8.520e-93
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0
Query:    1 PTEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 151
            PTEFNTCVFKLEVKNP  P DMPDP+P GTS A GPRRTMNVFSGAMEWCPHG+QVERFE +GGLRPVHDDILIAKLRPGQEI+AE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK E+E +EAEELVAKCPLNVFDIEDLGG  KRAKV
Sbjct:  132 PTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKV 282          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.990e-62
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 0
Query:   45 GAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 151
            GAMEWCPHG+QVERFE +GGLRPVHDDILIAKLRPGQEI+AE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK E+E +EAEELVAKCPLNVFDIEDLGG  KRAKV
Sbjct:  178 GAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKV 284          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 156 bits (395), Expect = 7.070e-44
Identity = 82/143 (57.34%), Postives = 96/143 (67.13%), Query Frame = 0
Query:    2 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 144
            T+ NT VFKL+V     PE   DP     S         +V+S  +EW P GNQ ERF   G +RPVHDDILIAKLRPGQ +  E HCRKGIGKDHAKFSPVATASYRL+P V L  +IE  +A  L+  CP+N+FDIED+GG
Sbjct:  121 TDENTIVFKLDVTCKFDPEHPKDPTKAIFS---------SVYSRDLEWVPQGNQEERF---GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDVGG 251          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 153 bits (386), Expect = 1.380e-42
Identity = 78/143 (54.55%), Postives = 96/143 (67.13%), Query Frame = 0
Query:    2 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 144
            T+ NT VFKL+V     PE   DP     S         +V+S  +EW P GNQ ERF   G +RPVH+DIL+AKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P V L  ++E  +A+ LV +C + +FDIED+GG
Sbjct:  117 TDENTIVFKLDVTCKFDPEHPKDPTKAIHS---------SVYSRDLEWVPQGNQEERF---GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDIGG 247          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA)

HSP 1 Score: 151 bits (382), Expect = 1.800e-42
Identity = 82/153 (53.59%), Postives = 101/153 (66.01%), Query Frame = 0
Query:    2 TEFNTCVFKLEVKNPTRP---EDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAKV 151
            T+ NT  F L+VK   +    E  PD L    S          V+SG M W PHG Q + F  +  ++PVHDDILIAKLRPGQEI     C KGIGKDHAKFSPVATA+YRLLP V++  ++  ++A+ LV KCP+NVFDIEDLGG +K+AKV
Sbjct:   77 TDKNTLEFTLKVKCEKKKDYKESYPDHLKYEHS---------KVYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNVFDIEDLGG-KKKAKV 219          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.450e-42
Identity = 79/146 (54.11%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    2 TEFNTCVFKLEVK---NPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 144
            T+ NT VFKL+V    +P  P+D    L K    +        V+S  +EW P GNQ ERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P V L   +E ++A+ LV +C + +FDIED+GG
Sbjct:  126 TDENTIVFKLDVTCAYDPAHPKD----LSKAVHAS--------VYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGG 256          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: M4C0R7_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R7_HYAAE)

HSP 1 Score: 149 bits (375), Expect = 9.840e-42
Identity = 78/143 (54.55%), Postives = 95/143 (66.43%), Query Frame = 0
Query:    2 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 144
            T+ NT VFKL+V     P+ + DP    +S         +V+S  +EW P GNQ ERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P V L  ++E   A+ LV +C   VFDIED+GG
Sbjct:   48 TDENTIVFKLDVTCKFDPDHLKDPTKALSS---------SVYSRDLEWVPQGNQEERF---GLIRPVSEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGVNAKRLVDECRTGVFDIEDIGG 178          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 151 bits (382), Expect = 1.230e-41
Identity = 78/143 (54.55%), Postives = 94/143 (65.73%), Query Frame = 0
Query:    2 TEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGG 144
            T+ NT VFKL+V     PE   DP     S         +V+S  +EW P GNQ ERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P V    ++E  +A+ LV  C + +FDIED+GG
Sbjct:  154 TDENTIVFKLDVTCKYDPEHPKDPTKAIHS---------SVYSRDLEWVPQGNQEERF---GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIEDIGG 284          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.330e-41
Identity = 81/147 (55.10%), Postives = 96/147 (65.31%), Query Frame = 0
Query:    2 TEFNTCVFKLEVK---NPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVA-KCPLNVFDIEDLGG 144
            T+ NT VFKL+V    +P  P+D    L              +V+S  +EW P GNQ ERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P + L   +   +A +LVA KC L VFDIEDLGG
Sbjct:  123 TDENTIVFKLDVTCRFDPAHPQDAAKAL------------HTSVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIEDLGG 254          
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.820e-41
Identity = 79/139 (56.83%), Postives = 91/139 (65.47%), Query Frame = 0
Query:    3 EFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWCPHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIED 141
            E NT VF+L  +   RP D  DP          P  T  V+SG  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  E+HCRKG+GKDHAK+SPVATASYRL P ++L   +    A ELVA CP+NVFDIED
Sbjct:  151 ENNTVVFRLH-RRCVRPADA-DPA--------APPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100959.87.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI8.520e-9387.42DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE2.990e-6288.79DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A0P1AUD4_PLAHL7.070e-4457.34DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT1.380e-4254.55DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6B2LAX2_9EUKA1.800e-4253.59DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A662X4Y9_9STRA3.450e-4254.11DNA-directed RNA polymerases I and III subunit RPA... [more]
M4C0R7_HYAAE9.840e-4254.55RPOLD domain-containing protein n=1 Tax=Hyaloperon... [more]
H3GV90_PHYRM1.230e-4154.55DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA1.330e-4155.10DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A836C8K2_9STRA3.820e-4156.83DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 8..154
e-value: 0.0014
score: -36.0
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 1..98
e-value: 4.1E-21
score: 77.7
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 6..102
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 5..101
e-value: 4.4E-15
score: 56.0
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 2..151
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 2..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100959contigH-elongata_contig100959:659..2097 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100959.87.1mRNA_H-elongata_contig100959.87.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100959 659..2097 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100959.87.1 ID=prot_H-elongata_contig100959.87.1|Name=mRNA_H-elongata_contig100959.87.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
PTEFNTCVFKLEVKNPTRPEDMPDPLPKGTSLAPGPRRTMNVFSGAMEWC
PHGNQVERFEQDGGLRPVHDDILIAKLRPGQEIIAELHCRKGIGKDHAKF
SPVATASYRLLPVVSLKHEIEDEEAEELVAKCPLNVFDIEDLGGGRKRAK
VGGAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036643RNApol_insert_sf
IPR011262DNA-dir_RNA_pol_insert
IPR033901RNAPI/II_AC40