mRNA_H-elongata_contig100933.85.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100933.85.1
Unique NamemRNA_H-elongata_contig100933.85.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.350e-79
Identity = 137/223 (61.43%), Postives = 164/223 (73.54%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTRWTREAAAASEKEDANAAAVDTESSLSTGKPAQPLIQA----TRDGTTFESLDEPEKNMIVDARKKVEALLAEMSGEKEYVERSVKLDPMNGRQRWLMYEFVGANTA-VKMSNLSGPHFARGIEV 654
            D  Q RY LAR S S+FM+TQYG+CCFRY  D RLEARPFN F+ PSTY G DRVYSCQASSM+FLS HGFDFQAW +HGVPFLSR++E V+E K++ RW REA  A+E+++A A                  ++      RDGTT ESL EPEK M+ DA KKVEALLAE S   EYV++SVKL+PMNGRQRWLMYEFVG++TA VK+SNL GP +AR +E+
Sbjct:   46 DSVQARYDLARGSCSQFMLTQYGICCFRYH-DERLEARPFNCFVVPSTYHGSDRVYSCQASSMDFLSKHGFDFQAWASHGVPFLSRAEEEVVEGKLRRRWEREATVAAERKEAVAXXXXXXXXXXXXXXXAAAVEGPVHTARDGTTIESLQEPEKGMVKDALKKVEALLAESSSGGEYVQKSVKLEPMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPMEI 267          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507C5F1_9FUNG (RNA_bind domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507C5F1_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-17
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITPST----YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288
            D  Q+RY   R S+ KF +TQYG+CCF +D       +RPFN +I P++    +   +R + CQ  S+EFL+ +GFDF AW+ HG+P+ S   E  I  +I
Sbjct:   46 DTPQERYSKLRQSSQKFTITQYGVCCFIWDSQSASYISRPFNFYIFPASAKFPFNVYERNFMCQVGSLEFLAKNGFDFNAWIRHGIPYCSNESETYIRTQI 146          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507EAB4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAB4_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-17
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDG-DGRLEARPFNAFITPST---YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288
            D  Q+RY   + SA  F  TQYGLC F +D    +  A+PFN ++ P+T     G+DR ++CQASS+ FL +  FDF  W++ G+P+++R +EA    KI
Sbjct:   46 DTVQERYAKCKMSAEAFQTTQYGLCTFSWDAAKHKYIAKPFNCYVFPATGNRVLGLDRHFTCQASSLSFLRDSKFDFNKWISQGIPYVNRDEEAKARRKI 145          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: F4PBJ7_BATDJ (RNA_bind domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PBJ7_BATDJ)

HSP 1 Score: 88.2 bits (217), Expect = 1.270e-16
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGD-GRLEARPFNAFITPST---YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKT 294
            D  Q+RY   RS+A  F   Q GL  F++D + G   ++PFN  I P T   +FG+DR +  Q SS+EFL  +GFDF  W+  G+PF+S ++EA I +K++T
Sbjct:   46 DTPQERYLKHRSAARLFEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFDFNKWIREGIPFVSITEEAAIRKKLET 147          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507EXB8_9FUNG (RNA_bind domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EXB8_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 2.400e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITP---STYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288
            D  Q+RY   R SA  F+V Q+GLC F +D   ++  A+PFN ++ P   S   G+DR YS Q  S+EFL  + FDF  W++ G+PF++   EA + +KI
Sbjct:   46 DTVQERYEKIRRSAQNFLVIQFGLCTFTWDSGRKVYVAKPFNCYVFPQSGSRTLGLDRQYSLQIGSLEFLRGNKFDFNKWISQGIPFVNHDDEAEVRQKI 145          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A1S8W8V7_9FUNG (RNA_bind domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W8V7_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 5.900e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITP---STYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIK 291
            D  Q+RY   RSSA  F  TQ GL  F ++ +G+    + FN  I P   + +FG+DR ++ Q+SS+EFL+N+GFDF  WVA G+PF+S  +E  I  K++
Sbjct:   46 DTPQERYTKRRSSAMLFNPTQVGLATFCWNAEGKAYIVKSFNFNIFPRAGNKFFGLDRTFASQSSSLEFLNNNGFDFNKWVAEGIPFVSSVEEKAIRTKLE 146          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A662X7Q8_9STRA (DHHC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7Q8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.660e-15
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTR 297
            D  ++RY   + S   F++TQ+GL     D D + + + +N ++ P  Y   D  + CQASS++FLS HGFDF  ++A G+PFL+ S+  V++++++ R
Sbjct:  100 DTLEERYRKVKRSGESFLITQFGLSTVHVDKDEQFQIKTWNFYVFPRPYGTQDERFLCQASSLQFLSEHGFDFNKFIADGIPFLNLSKTTVMKKRLQRR 198          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: T0QZK7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QZK7_SAPDV)

HSP 1 Score: 81.6 bits (200), Expect = 2.280e-14
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVI 276
            D  ++RY   R+S   F++TQ+GL     + D +   + FN ++ P  Y  MD  + CQASS++F+S HGFDF  ++  G+P+++RS EA +
Sbjct:   79 DTLEERYAKVRASGENFLITQFGLALVHVEDD-KTWIKCFNFYVFPRPYANMDTRFLCQASSIQFMSEHGFDFNKFIRDGIPYMTRSNEAYV 169          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A3F2RN63_9STRA (Palmitoyltransferase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN63_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.560e-14
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTR 297
            D  ++RY   + +   F++TQ+GL     D   + + R +N +I P  Y  +D  + CQASSM+FLS HGFDF  ++  G+PF++ S+ A ++++++ R
Sbjct:   48 DTLEERYHKVKRAGESFLITQFGLSTVHLDQKDQFQIRTWNFYIFPRPYGSLDERFLCQASSMQFLSEHGFDFNKFIRDGIPFVNLSKTAGMKKRLQRR 146          
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A067RCE4_ZOONE (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067RCE4_ZOONE)

HSP 1 Score: 81.3 bits (199), Expect = 3.090e-14
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGD-GRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288
            D S +RY   R S   F++ Q G+C FR+  D  + EA  +  +I P ++  +D  + CQASS+EFL  H FDF  +V  GVP+L++ QEA + +++
Sbjct:   47 DTSNERYDKLRRSVQHFIIMQIGICTFRFVQDKNKYEASRYTFYIFPKSFASVDNKFMCQASSLEFLCQHDFDFNKFVYEGVPYLNQQQEAHLRKQL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNN0_ECTSI3.350e-7961.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A507C5F1_9FUNG1.430e-1741.58RNA_bind domain-containing protein n=2 Tax=Synchyt... [more]
A0A507EAB4_9FUNG1.530e-1742.00Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
F4PBJ7_BATDJ1.270e-1643.14RNA_bind domain-containing protein n=3 Tax=Batrach... [more]
A0A507EXB8_9FUNG2.400e-1642.00RNA_bind domain-containing protein n=2 Tax=Spizell... [more]
A0A1S8W8V7_9FUNG5.900e-1643.56RNA_bind domain-containing protein n=1 Tax=Batrach... [more]
A0A662X7Q8_9STRA1.660e-1536.36DHHC domain-containing protein n=2 Tax=Nothophytop... [more]
T0QZK7_SAPDV2.280e-1438.04Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3F2RN63_9STRA2.560e-1435.35Palmitoyltransferase n=2 Tax=Phytophthora kernovia... [more]
A0A067RCE4_ZOONE3.090e-1439.18Poly(A)-specific ribonuclease PARN-like domain-con... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100933contigH-elongata_contig100933:1237..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue9e-68
Seed eggNOG ortholog2880.D7FNN0
KEGG koko:K01148,ko:K13202
KEGG Pathwayko03018,map03018
EggNOG free text desc.poly(A)-specific ribonuclease activity
EggNOG OGsKOG1990@1,KOG1990@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100933.85.1prot_H-elongata_contig100933.85.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100933 1237..2151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.3863838-CDS-H-elongata_contig100933:1236..14361622929550.3863838-CDS-H-elongata_contig100933:1236..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1237..1436 +
1691679065.5517964-CDS-H-elongata_contig100933:1236..14361691679065.5517964-CDS-H-elongata_contig100933:1236..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1237..1436 +
1622929550.4032934-CDS-H-elongata_contig100933:1569..18491622929550.4032934-CDS-H-elongata_contig100933:1569..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1570..1849 +
1691679065.5630996-CDS-H-elongata_contig100933:1569..18491691679065.5630996-CDS-H-elongata_contig100933:1569..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1570..1849 +
1622929550.4237633-CDS-H-elongata_contig100933:1977..21511622929550.4237633-CDS-H-elongata_contig100933:1977..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1978..2151 +
1691679065.5722547-CDS-H-elongata_contig100933:1977..21511691679065.5722547-CDS-H-elongata_contig100933:1977..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100933 1978..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100933.85.1

>prot_H-elongata_contig100933.85.1 ID=prot_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYF
GMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTRW
TREAAAASEKEDANAAAVDTESSLSTGKPAQPLIQATRDGTTFESLDEPE
KNMIVDARKKVEALLAEMSGEKEYVERSVKLDPMNGRQRWLMYEFVGANT
AVKMSNLSGPHFARGIEV
back to top

mRNA from alignment at H-elongata_contig100933:1237..2151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100933.85.1 ID=mRNA_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig100933:1237..2151+ (Himanthalia elongata Himel1 dioecious)
GACTTCTCTCAGGATCGATATTGCTTGGCGAGGTCTTCGGCCTCGAAGTT TATGGTAACGCAGTACGGGCTGTGCTGCTTTAGGTACGACGGAGATGGCC GCCTCGAGGCCCGACCATTTAATGCCTTCATAACGCCAAGCACCTACTTT GGAATGGACCGCGTCTACAGCTGCCAAGCGTCGTCCATGGAGTTCCTCAG GTACGCGAGGTCCGAACCATTCCTTGACCACGCATATTAGGCGCGTAGAG GGTCTGTCTGGAAGTCACGGTGCATCACTTCCCATATTTGTGCCGTTAAC TGCCAACCGCGTTATGGTGCTCGGTGTCGACAGTAACCACGGCTTCGATT TTCAAGCGTGGGTGGCGCACGGCGTGCCGTTCCTTTCCCGTTCACAAGAG GCGGTCATAGAAGAAAAAATCAAGACTCGTTGGACGCGGGAGGCGGCCGC AGCGTCTGAAAAGGAAGATGCCAATGCAGCAGCGGTGGACACCGAATCTT CATTGTCGACGGGGAAGCCTGCACAGCCGCTAATCCAGGCGACACGTGAC GGCACTACTTTTGAAAGCCTGGACGAGCCTGAAAAAAACATGATCGTCGA TGCACGTAAAAAGGTGCGCGAGCAGTGGAGTCGGTCTAGGGGGCATCGAT CGTAATTGTTCTAACAATGACGTGCATATCTCCTCCGCGCCACCGTATTT ATCCCCGACACTTCGCTCTACCGTATATGTCTTCGCCGAAGGTGGAAGCG CTCCTTGCCGAGATGTCGGGTGAAAAGGAGTACGTGGAGAGGTCAGTGAA GCTTGACCCCATGAACGGGAGGCAACGGTGGCTCATGTACGAGTTCGTTG GCGCGAACACGGCCGTGAAGATGTCAAACCTGAGTGGGCCCCACTTTGCT CGGGGAATCGAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100933:1237..2151+

>mRNA_H-elongata_contig100933.85.1 ID=mRNA_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig100933:1237..2151+ (Himanthalia elongata Himel1 dioecious)
GACTTCTCTCAGGATCGATATTGCTTGGCGAGGTCTTCGGCCTCGAAGTT
TATGGTAACGCAGTACGGGCTGTGCTGCTTTAGGTACGACGGAGATGGCC
GCCTCGAGGCCCGACCATTTAATGCCTTCATAACGCCAAGCACCTACTTT
GGAATGGACCGCGTCTACAGCTGCCAAGCGTCGTCCATGGAGTTCCTCAG
GACTTCTCTCAGGATCGATATTGCTTGGCGAGGTCTTCGGCCTCGAAGTT
TATGGTAACGCAGTACGGGCTGTGCTGCTTTAGGTACGACGGAGATGGCC
GCCTCGAGGCCCGACCATTTAATGCCTTCATAACGCCAAGCACCTACTTT
GGAATGGACCGCGTCTACAGCTGCCAAGCGTCGTCCATGGAGTTCCTCAG
TAACCACGGCTTCGATTTTCAAGCGTGGGTGGCGCACGGCGTGCCGTTCC
TTTCCCGTTCACAAGAGGCGGTCATAGAAGAAAAAATCAAGACTCGTTGG
ACGCGGGAGGCGGCCGCAGCGTCTGAAAAGGAAGATGCCAATGCAGCAGC
GGTGGACACCGAATCTTCATTGTCGACGGGGAAGCCTGCACAGCCGCTAA
TCCAGGCGACACGTGACGGCACTACTTTTGAAAGCCTGGACGAGCCTGAA
AAAAACATGATCGTCGATGCACGTAAAAAGTAACCACGGCTTCGATTTTC
AAGCGTGGGTGGCGCACGGCGTGCCGTTCCTTTCCCGTTCACAAGAGGCG
GTCATAGAAGAAAAAATCAAGACTCGTTGGACGCGGGAGGCGGCCGCAGC
GTCTGAAAAGGAAGATGCCAATGCAGCAGCGGTGGACACCGAATCTTCAT
TGTCGACGGGGAAGCCTGCACAGCCGCTAATCCAGGCGACACGTGACGGC
ACTACTTTTGAAAGCCTGGACGAGCCTGAAAAAAACATGATCGTCGATGC
ACGTAAAAAGGTGGAAGCGCTCCTTGCCGAGATGTCGGGTGAAAAGGAGT
ACGTGGAGAGGTCAGTGAAGCTTGACCCCATGAACGGGAGGCAACGGTGG
CTCATGTACGAGTTCGTTGGCGCGAACACGGCCGTGAAGATGTCAAACCT
GAGTGGGCCCCACTTTGCTCGGGGAATCGAGGTGGTGGAAGCGCTCCTTG
CCGAGATGTCGGGTGAAAAGGAGTACGTGGAGAGGTCAGTGAAGCTTGAC
CCCATGAACGGGAGGCAACGGTGGCTCATGTACGAGTTCGTTGGCGCGAA
CACGGCCGTGAAGATGTCAAACCTGAGTGGGCCCCACTTTGCTCGGGGAA
TCGAGGTG
back to top