mRNA_H-elongata_contig100933.85.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI) HSP 1 Score: 259 bits (663), Expect = 3.350e-79 Identity = 137/223 (61.43%), Postives = 164/223 (73.54%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTRWTREAAAASEKEDANAAAVDTESSLSTGKPAQPLIQA----TRDGTTFESLDEPEKNMIVDARKKVEALLAEMSGEKEYVERSVKLDPMNGRQRWLMYEFVGANTA-VKMSNLSGPHFARGIEV 654 D Q RY LAR S S+FM+TQYG+CCFRY D RLEARPFN F+ PSTY G DRVYSCQASSM+FLS HGFDFQAW +HGVPFLSR++E V+E K++ RW REA A+E+++A A ++ RDGTT ESL EPEK M+ DA KKVEALLAE S EYV++SVKL+PMNGRQRWLMYEFVG++TA VK+SNL GP +AR +E+ Sbjct: 46 DSVQARYDLARGSCSQFMLTQYGICCFRYH-DERLEARPFNCFVVPSTYHGSDRVYSCQASSMDFLSKHGFDFQAWASHGVPFLSRAEEEVVEGKLRRRWEREATVAAERKEAVAXXXXXXXXXXXXXXXAAAVEGPVHTARDGTTIESLQEPEKGMVKDALKKVEALLAESSSGGEYVQKSVKLEPMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPMEI 267
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507C5F1_9FUNG (RNA_bind domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507C5F1_9FUNG) HSP 1 Score: 90.9 bits (224), Expect = 1.430e-17 Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITPST----YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288 D Q+RY R S+ KF +TQYG+CCF +D +RPFN +I P++ + +R + CQ S+EFL+ +GFDF AW+ HG+P+ S E I +I Sbjct: 46 DTPQERYSKLRQSSQKFTITQYGVCCFIWDSQSASYISRPFNFYIFPASAKFPFNVYERNFMCQVGSLEFLAKNGFDFNAWIRHGIPYCSNESETYIRTQI 146
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507EAB4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAB4_9FUNG) HSP 1 Score: 90.9 bits (224), Expect = 1.530e-17 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDG-DGRLEARPFNAFITPST---YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288 D Q+RY + SA F TQYGLC F +D + A+PFN ++ P+T G+DR ++CQASS+ FL + FDF W++ G+P+++R +EA KI Sbjct: 46 DTVQERYAKCKMSAEAFQTTQYGLCTFSWDAAKHKYIAKPFNCYVFPATGNRVLGLDRHFTCQASSLSFLRDSKFDFNKWISQGIPYVNRDEEAKARRKI 145
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: F4PBJ7_BATDJ (RNA_bind domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PBJ7_BATDJ) HSP 1 Score: 88.2 bits (217), Expect = 1.270e-16 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGD-GRLEARPFNAFITPST---YFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKT 294 D Q+RY RS+A F Q GL F++D + G ++PFN I P T +FG+DR + Q SS+EFL +GFDF W+ G+PF+S ++EA I +K++T Sbjct: 46 DTPQERYLKHRSAARLFEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFDFNKWIREGIPFVSITEEAAIRKKLET 147
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A507EXB8_9FUNG (RNA_bind domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EXB8_9FUNG) HSP 1 Score: 87.4 bits (215), Expect = 2.400e-16 Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITP---STYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288 D Q+RY R SA F+V Q+GLC F +D ++ A+PFN ++ P S G+DR YS Q S+EFL + FDF W++ G+PF++ EA + +KI Sbjct: 46 DTVQERYEKIRRSAQNFLVIQFGLCTFTWDSGRKVYVAKPFNCYVFPQSGSRTLGLDRQYSLQIGSLEFLRGNKFDFNKWISQGIPFVNHDDEAEVRQKI 145
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A1S8W8V7_9FUNG (RNA_bind domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W8V7_9FUNG) HSP 1 Score: 86.3 bits (212), Expect = 5.900e-16 Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLE-ARPFNAFITP---STYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIK 291 D Q+RY RSSA F TQ GL F ++ +G+ + FN I P + +FG+DR ++ Q+SS+EFL+N+GFDF WVA G+PF+S +E I K++ Sbjct: 46 DTPQERYTKRRSSAMLFNPTQVGLATFCWNAEGKAYIVKSFNFNIFPRAGNKFFGLDRTFASQSSSLEFLNNNGFDFNKWVAEGIPFVSSVEEKAIRTKLE 146
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A662X7Q8_9STRA (DHHC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7Q8_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.660e-15 Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTR 297 D ++RY + S F++TQ+GL D D + + + +N ++ P Y D + CQASS++FLS HGFDF ++A G+PFL+ S+ V++++++ R Sbjct: 100 DTLEERYRKVKRSGESFLITQFGLSTVHVDKDEQFQIKTWNFYVFPRPYGTQDERFLCQASSLQFLSEHGFDFNKFIADGIPFLNLSKTTVMKKRLQRR 198
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: T0QZK7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QZK7_SAPDV) HSP 1 Score: 81.6 bits (200), Expect = 2.280e-14 Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVI 276 D ++RY R+S F++TQ+GL + D + + FN ++ P Y MD + CQASS++F+S HGFDF ++ G+P+++RS EA + Sbjct: 79 DTLEERYAKVRASGENFLITQFGLALVHVEDD-KTWIKCFNFYVFPRPYANMDTRFLCQASSIQFMSEHGFDFNKFIRDGIPYMTRSNEAYV 169
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A3F2RN63_9STRA (Palmitoyltransferase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN63_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.560e-14 Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKIKTR 297 D ++RY + + F++TQ+GL D + + R +N +I P Y +D + CQASSM+FLS HGFDF ++ G+PF++ S+ A ++++++ R Sbjct: 48 DTLEERYHKVKRAGESFLITQFGLSTVHLDQKDQFQIRTWNFYIFPRPYGSLDERFLCQASSMQFLSEHGFDFNKFIRDGIPFVNLSKTAGMKKRLQRR 146
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Match: A0A067RCE4_ZOONE (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067RCE4_ZOONE) HSP 1 Score: 81.3 bits (199), Expect = 3.090e-14 Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 1 DFSQDRYCLARSSASKFMVTQYGLCCFRYDGD-GRLEARPFNAFITPSTYFGMDRVYSCQASSMEFLSNHGFDFQAWVAHGVPFLSRSQEAVIEEKI 288 D S +RY R S F++ Q G+C FR+ D + EA + +I P ++ +D + CQASS+EFL H FDF +V GVP+L++ QEA + +++ Sbjct: 47 DTSNERYDKLRRSVQHFIIMQIGICTFRFVQDKNKYEASRYTFYIFPKSFASVDNKFMCQASSLEFLCQHDFDFNKFVYEGVPYLNQQQEAHLRKQL 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100933.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100933.85.1 >prot_H-elongata_contig100933.85.1 ID=prot_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp DFSQDRYCLARSSASKFMVTQYGLCCFRYDGDGRLEARPFNAFITPSTYFback to top mRNA from alignment at H-elongata_contig100933:1237..2151+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100933.85.1 ID=mRNA_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig100933:1237..2151+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100933:1237..2151+ >mRNA_H-elongata_contig100933.85.1 ID=mRNA_H-elongata_contig100933.85.1|Name=mRNA_H-elongata_contig100933.85.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig100933:1237..2151+ (Himanthalia elongata Himel1 dioecious)back to top |