mRNA_H-elongata_contig100806.73.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100806.73.1
Unique NamemRNA_H-elongata_contig100806.73.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100806.73.1 vs. uniprot
Match: D7G859_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G859_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 2.000e-76
Identity = 166/378 (43.92%), Postives = 206/378 (54.50%), Query Frame = 1 
Query:   10 VARLRCRFCDHPFTPAGRGLLVRAMPSGRWDDCIEDMICSDGPSAVSLIARDVNFASEGRCLMGHAEVLVHSRDVLPGAVVVGDGGSQLHNETPRGNKHDRDETRQILECARCELVVGRPSISRGG---LGKGGLDLVLLKHALLADNLSPPDGSVVVLGGGEGVNGDDISKTGIEEIFH-----------------GRQQQCGVVLKGEVSLPRARIFESRTAMKWLMGEMEHSKDADGCSRFVVVARGRPRAVPAGCLKILLVAMHNLVSIDWNRKPHRAHRVAFREESLEEAEKSLEEQRQGGQDSFPEGSGAMSPEV-SIQRAARVPARFIEISFKEYRAVRRRLNDVEWASALTVNATLAKLGRHGYKFSYLF 1080
            V+ LRCRFC HP TPAGR L VRAMPSGRWD+CIEDMIC DGP AV ++ARDVNFA  GRCLM  AEVL+H RDV+ GA+ V D      +  P   + D  E R + +CARC+L +GRP+ S  G     +  + L+LLKH LL D+    DG                                           G  +       G       R+FE+RTA+KWL  EM H  + DGC+RF+V A+GR  A P G L +LLV M++LVS+D + KP RAHRVAFREESLEEAE++ E                      S + AA+VPAR +E+S+ EY  VR+RL D  WA A        KL   GY +SYLF
Sbjct:  759 VSCLRCRFCKHPITPAGRVLAVRAMPSGRWDECIEDMICYDGPQAVPMLARDVNFARPGRCLMAQAEVLLHPRDVITGALTVADARGGAVSMMP---EEDDLEWRGV-DCARCDLPLGRPATSPIGHDNSSQESVGLLLLKHCLLGDD----DGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATEGGLARGPPEATAGSPEKKSPRVFENRTAIKWLQREMAHYNERDGCARFIVSAKGRSPATPGGSLSLLLVKMNSLVSVDGSSKPGRAHRVAFREESLEEAERADEXXXXXXXXXXXXXXXXXXXXXXSDKTAAKVPARLLEVSYGEYATVRQRLLDTAWAGA-----PWRKLDSRGYSYSYLF 1123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100806.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G859_ECTSI2.000e-7643.92Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100806contigH-elongata_contig100806:1295..2377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.9
Seed ortholog evalue1.3e-68
Seed eggNOG ortholog2880.D7G859
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-12_001390.1
Exons1
Model size1083
Cds size1083
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.2151716-CDS-H-elongata_contig100806:1294..23771622929549.2151716-CDS-H-elongata_contig100806:1294..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100806 1295..2377 -
1691679065.040051-CDS-H-elongata_contig100806:1294..23771691679065.040051-CDS-H-elongata_contig100806:1294..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100806 1295..2377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100806.73.1prot_H-elongata_contig100806.73.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100806 1295..2377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100806.73.1

>prot_H-elongata_contig100806.73.1 ID=prot_H-elongata_contig100806.73.1|Name=mRNA_H-elongata_contig100806.73.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
MSVVARLRCRFCDHPFTPAGRGLLVRAMPSGRWDDCIEDMICSDGPSAVS
LIARDVNFASEGRCLMGHAEVLVHSRDVLPGAVVVGDGGSQLHNETPRGN
KHDRDETRQILECARCELVVGRPSISRGGLGKGGLDLVLLKHALLADNLS
PPDGSVVVLGGGEGVNGDDISKTGIEEIFHGRQQQCGVVLKGEVSLPRAR
IFESRTAMKWLMGEMEHSKDADGCSRFVVVARGRPRAVPAGCLKILLVAM
HNLVSIDWNRKPHRAHRVAFREESLEEAEKSLEEQRQGGQDSFPEGSGAM
SPEVSIQRAARVPARFIEISFKEYRAVRRRLNDVEWASALTVNATLAKLG
RHGYKFSYLF*
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mRNA from alignment at H-elongata_contig100806:1295..2377-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100806.73.1 ID=mRNA_H-elongata_contig100806.73.1|Name=mRNA_H-elongata_contig100806.73.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig100806:1295..2377- (Himanthalia elongata Himel1 dioecious)
ATGTCCGTCGTGGCGAGGCTCCGGTGCAGGTTCTGTGACCACCCTTTTAC
GCCCGCCGGGCGCGGCCTGCTGGTTCGAGCAATGCCGTCCGGTCGGTGGG
ACGATTGTATTGAAGATATGATCTGCTCCGACGGTCCTTCGGCCGTGTCC
CTGATCGCGCGGGACGTGAACTTCGCGAGCGAAGGGCGATGCCTGATGGG
GCACGCTGAGGTTCTGGTACACTCACGAGATGTCTTGCCTGGCGCGGTGG
TGGTCGGTGACGGTGGGTCACAACTGCACAACGAGACCCCCCGCGGGAAT
AAGCACGACCGCGACGAGACGCGGCAAATCCTCGAATGCGCGCGCTGCGA
ACTGGTCGTCGGCCGTCCATCCATCTCACGAGGCGGGCTCGGCAAGGGGG
GCCTCGACCTCGTACTGCTAAAGCACGCGTTATTGGCTGATAATCTCTCC
CCACCGGACGGTTCGGTCGTCGTTTTAGGCGGTGGTGAAGGTGTAAACGG
CGATGACATCAGTAAAACCGGTATCGAGGAAATCTTTCATGGAAGACAGC
AGCAGTGTGGAGTTGTATTGAAGGGAGAGGTATCATTACCACGCGCGAGA
ATTTTTGAAAGCCGAACGGCGATGAAGTGGCTCATGGGGGAGATGGAGCA
TTCCAAGGACGCCGACGGCTGCTCCCGCTTCGTTGTGGTGGCGAGGGGCC
GCCCTCGTGCAGTGCCCGCTGGGTGCCTGAAAATCCTCCTGGTTGCTATG
CACAACCTTGTCTCCATCGACTGGAACCGAAAGCCTCACCGGGCACATCG
AGTCGCGTTCCGGGAAGAGTCTCTAGAGGAGGCAGAGAAATCGCTCGAAG
AACAGCGTCAAGGCGGGCAAGATTCATTCCCCGAAGGTAGTGGAGCGATG
TCTCCAGAGGTCTCGATCCAGAGGGCGGCAAGGGTTCCCGCTCGTTTCAT
CGAAATATCATTCAAAGAGTACCGCGCTGTGAGGCGGCGACTGAATGACG
TCGAGTGGGCGTCAGCGTTGACCGTGAACGCTACATTGGCGAAGTTGGGA
CGTCACGGGTATAAGTTCAGTTACCTGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig100806:1295..2377-

>mRNA_H-elongata_contig100806.73.1 ID=mRNA_H-elongata_contig100806.73.1|Name=mRNA_H-elongata_contig100806.73.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig100806:1295..2377- (Himanthalia elongata Himel1 dioecious)
ATGTCCGTCGTGGCGAGGCTCCGGTGCAGGTTCTGTGACCACCCTTTTAC
GCCCGCCGGGCGCGGCCTGCTGGTTCGAGCAATGCCGTCCGGTCGGTGGG
ACGATTGTATTGAAGATATGATCTGCTCCGACGGTCCTTCGGCCGTGTCC
CTGATCGCGCGGGACGTGAACTTCGCGAGCGAAGGGCGATGCCTGATGGG
GCACGCTGAGGTTCTGGTACACTCACGAGATGTCTTGCCTGGCGCGGTGG
TGGTCGGTGACGGTGGGTCACAACTGCACAACGAGACCCCCCGCGGGAAT
AAGCACGACCGCGACGAGACGCGGCAAATCCTCGAATGCGCGCGCTGCGA
ACTGGTCGTCGGCCGTCCATCCATCTCACGAGGCGGGCTCGGCAAGGGGG
GCCTCGACCTCGTACTGCTAAAGCACGCGTTATTGGCTGATAATCTCTCC
CCACCGGACGGTTCGGTCGTCGTTTTAGGCGGTGGTGAAGGTGTAAACGG
CGATGACATCAGTAAAACCGGTATCGAGGAAATCTTTCATGGAAGACAGC
AGCAGTGTGGAGTTGTATTGAAGGGAGAGGTATCATTACCACGCGCGAGA
ATTTTTGAAAGCCGAACGGCGATGAAGTGGCTCATGGGGGAGATGGAGCA
TTCCAAGGACGCCGACGGCTGCTCCCGCTTCGTTGTGGTGGCGAGGGGCC
GCCCTCGTGCAGTGCCCGCTGGGTGCCTGAAAATCCTCCTGGTTGCTATG
CACAACCTTGTCTCCATCGACTGGAACCGAAAGCCTCACCGGGCACATCG
AGTCGCGTTCCGGGAAGAGTCTCTAGAGGAGGCAGAGAAATCGCTCGAAG
AACAGCGTCAAGGCGGGCAAGATTCATTCCCCGAAGGTAGTGGAGCGATG
TCTCCAGAGGTCTCGATCCAGAGGGCGGCAAGGGTTCCCGCTCGTTTCAT
CGAAATATCATTCAAAGAGTACCGCGCTGTGAGGCGGCGACTGAATGACG
TCGAGTGGGCGTCAGCGTTGACCGTGAACGCTACATTGGCGAAGTTGGGA
CGTCACGGGTATAAGTTCAGTTACCTGTTTTGAATGTCCGTCGTGGCGAG
GCTCCGGTGCAGGTTCTGTGACCACCCTTTTACGCCCGCCGGGCGCGGCC
TGCTGGTTCGAGCAATGCCGTCCGGTCGGTGGGACGATTGTATTGAAGAT
ATGATCTGCTCCGACGGTCCTTCGGCCGTGTCCCTGATCGCGCGGGACGT
GAACTTCGCGAGCGAAGGGCGATGCCTGATGGGGCACGCTGAGGTTCTGG
TACACTCACGAGATGTCTTGCCTGGCGCGGTGGTGGTCGGTGACGGTGGG
TCACAACTGCACAACGAGACCCCCCGCGGGAATAAGCACGACCGCGACGA
GACGCGGCAAATCCTCGAATGCGCGCGCTGCGAACTGGTCGTCGGCCGTC
CATCCATCTCACGAGGCGGGCTCGGCAAGGGGGGCCTCGACCTCGTACTG
CTAAAGCACGCGTTATTGGCTGATAATCTCTCCCCACCGGACGGTTCGGT
CGTCGTTTTAGGCGGTGGTGAAGGTGTAAACGGCGATGACATCAGTAAAA
CCGGTATCGAGGAAATCTTTCATGGAAGACAGCAGCAGTGTGGAGTTGTA
TTGAAGGGAGAGGTATCATTACCACGCGCGAGAATTTTTGAAAGCCGAAC
GGCGATGAAGTGGCTCATGGGGGAGATGGAGCATTCCAAGGACGCCGACG
GCTGCTCCCGCTTCGTTGTGGTGGCGAGGGGCCGCCCTCGTGCAGTGCCC
GCTGGGTGCCTGAAAATCCTCCTGGTTGCTATGCACAACCTTGTCTCCAT
CGACTGGAACCGAAAGCCTCACCGGGCACATCGAGTCGCGTTCCGGGAAG
AGTCTCTAGAGGAGGCAGAGAAATCGCTCGAAGAACAGCGTCAAGGCGGG
CAAGATTCATTCCCCGAAGGTAGTGGAGCGATGTCTCCAGAGGTCTCGAT
CCAGAGGGCGGCAAGGGTTCCCGCTCGTTTCATCGAAATATCATTCAAAG
AGTACCGCGCTGTGAGGCGGCGACTGAATGACGTCGAGTGGGCGTCAGCG
TTGACCGTGAACGCTACATTGGCGAAGTTGGGACGTCACGGGTATAAGTT
CAGTTACCTGTTTTGA
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