mRNA_H-elongata_contig100718.65.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100718.65.1
Unique NamemRNA_H-elongata_contig100718.65.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match: D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 2.660e-81
Identity = 138/228 (60.53%), Postives = 159/228 (69.74%), Query Frame = 1 
Query:    1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP---SSVAAPKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGE 675
            SL+V +   C GH KP+TCV FH  G +VLTASKD  +C    LWD  RGSE ALLPT SGLP   S+  AP ++CRSCCFSP KPD IF++QSG RG+AYVTEW+++         G G                V+ V+V  VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF       ALGGYDLLAGSADYKI+L KSQG+
Sbjct:  181 SLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQGD 392
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BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match: A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 4.540e-78
Identity = 136/229 (59.39%), Postives = 160/229 (69.87%), Query Frame = 1 
Query:    1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP--SSVA-APKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGES 678
            SL+V +   C GH KP+TCV FH  G ++LTASKD  +C    LWD  RGSE ALLPT SGLP  +S+A AP ++CRSCCFSP +PD IF++QS  RG+AYVTEW+++         G G                V+ V+V  VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF       ALGGYDLLAGSADYKI+L KSQG +
Sbjct:  181 SLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQGSA 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G743_ECTSI2.660e-8160.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ9_9PHAE4.540e-7859.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100718contigH-elongata_contig100718:111..1868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue6.7e-66
Seed eggNOG ortholog2880.D7G743
KEGG koko:K13886
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size678
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100718.65.1prot_H-elongata_contig100718.65.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100718 111..1868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.4036834-CDS-H-elongata_contig100718:110..2161622929548.4036834-CDS-H-elongata_contig100718:110..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 111..216 +
1691679064.6125586-CDS-H-elongata_contig100718:110..2161691679064.6125586-CDS-H-elongata_contig100718:110..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 111..216 +
1622929548.4242847-CDS-H-elongata_contig100718:363..3851622929548.4242847-CDS-H-elongata_contig100718:363..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 364..385 +
1691679064.6366735-CDS-H-elongata_contig100718:363..3851691679064.6366735-CDS-H-elongata_contig100718:363..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 364..385 +
1622929548.4380095-CDS-H-elongata_contig100718:772..11781622929548.4380095-CDS-H-elongata_contig100718:772..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 773..1178 +
1691679064.6489146-CDS-H-elongata_contig100718:772..11781691679064.6489146-CDS-H-elongata_contig100718:772..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 773..1178 +
1622929548.4586358-CDS-H-elongata_contig100718:1724..18681622929548.4586358-CDS-H-elongata_contig100718:1724..1868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 1725..1868 +
1691679064.6706617-CDS-H-elongata_contig100718:1724..18681691679064.6706617-CDS-H-elongata_contig100718:1724..1868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100718 1725..1868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100718.65.1

>prot_H-elongata_contig100718.65.1 ID=prot_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRG
SEMALLPTASGLPSSVAAPKVICRSCCFSPSKPDVIFTLQSGQRGSAYVT
EWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSM
SVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGAS
VALGGYDLLAGSADYKITLLKSQGES
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mRNA from alignment at H-elongata_contig100718:111..1868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100718.65.1 ID=mRNA_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-elongata_contig100718:111..1868+ (Himanthalia elongata Himel1 dioecious)
TCTCTGGCAGTAACCCTTGCCGGGAAATGCATCGGACATATTAAGCCCAT
CACGTGCGTTCTATTTCACTCCTTGGGCGAGATGGTGCTCACGGCCTCTA
AGGACGGTACTTGCAGGCGAGGCAAAGCGGAATGAAGCCAAACGATATAA
CTTCTCGTGATGGCCTTCGCATCTCAAGAGCATATTTTATTCGGGAACGC
GGCTTTACGCGCGATCTGCTGATTGTTTTGCTGTTGGCTGTCGTTGCTCG
GAGTCGCATCTTGCGCTAGGAACCTGTCTTTGTACTATTCATAGTAGAAT
TGCCGGTACCTGTCTGCGTCACTCACACCGCACTTTGCTTAACGTGGGCG
TATTTAGAAGGGAGGTTGGGGCTGGACACAAGCTCAAACGACAGCCGCCC
ACCCCTTGCTATATATTTAATGATTAATTATTAATGATTAATTATGTTAT
CTTGTAGACTGTTACAATGAGAGGAGTAGAGAAGCTCCTTTCCCTTATTG
CTGCTTTTCCATGTCCGTACGTGCTCCCTCAACCCGAGCACGACATGAGA
CACGACACGAGACGACACGGCATGACTCCATTATATACACGAGGCATGTC
ATTACACGGTACATCATATCCCAGCAATCGACCCTCGCCTCCACCCCTTT
CCCTCCTCACAGACTGTGGGACTGGCGGCGTGGTTCTGAGATGGCTCTCC
TTCCGACGGCCTCCGGGTTGCCGTCCAGCGTGGCGGCTCCCAAGGTAATA
TGCCGCTCTTGCTGCTTCTCCCCCTCAAAGCCGGACGTGATATTCACGTT
GCAGAGCGGGCAGCGCGGGAGCGCTTACGTCACCGAGTGGAAGTTCGCGC
AGGCGGCTACCGCGGTCGGCACCACGGGAGAGGGGGATAGGGGACATAAG
CAAGGGGACGGGGACGTGGACACTAAGTTCTCGGTGAGAGCCGTCCGCGT
GAAACGCGTGTCTCCGCACCCGGCGACCAGCATGTCTGTCCGGAACGACG
GTGTGCGTTTGGCCGTTGCAAACGTGGAAGGAACTGTGATCGTCTACCGG
CTGCCGGGCTTTGCGAAGGTGAAGAGAAGGGAAGGGAAGAGGACGCGCGT
TGAAGGTTTATTTATTTGAATGTTGTGCGTGTGTGTGTGTTTTTTTTTGC
TCTGAATACTTTGGAGCGAGATGTGTTCGAAACTTTTGTTTGGTAGCAAA
GCGCCTGTGGTATTTGGTACCGAGCGTTCCGGGCCGTATTGAGCCGAATG
AAAATCCCAGCGTCGCTCGATTATACAAGGCACGTGGACTGCGATGCGCG
CCCCATCCCATTGGTGTTGGTCACTCTTGTCCCCCCATGGCGATACTACG
AAACAATTCTTGAGCATCTTGTCGGGAGGGGCGTATGGAAGGTCATAACA
TAATACCGAACACTATGTTGTTTATTTGGGAGACACAAATATAGACCAAA
TATACACACACACACATACATACATACATACATACATACATACATACAAT
GTGTCTAGCCTATAATTACTAACATGACAATGTCGGAGTGCGCGGCTATG
TGCAATGTAATAAATGCACACACACACACACACAAACACAAACACAAACA
CACACATTTTCCAGGTGATGGAGTATCGCGCACACGATCTGCCCGTAACG
GGCCTGGGGTTTACGCCTGATGGGGCAAGCGTCGCGCTTGGAGGCTACGA
CCTACTAGCCGGTTCCGCTGACTACAAAATCACCCTTTTAAAATCTCAAG
GTGAGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig100718:111..1868+

>mRNA_H-elongata_contig100718.65.1 ID=mRNA_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig100718:111..1868+ (Himanthalia elongata Himel1 dioecious)
TCTCTGGCAGTAACCCTTGCCGGGAAATGCATCGGACATATTAAGCCCAT
CACGTGCGTTCTATTTCACTCCTTGGGCGAGATGGTGCTCACGGCCTCTA
AGGACGTCTCTGGCAGTAACCCTTGCCGGGAAATGCATCGGACATATTAA
GCCCATCACGTGCGTTCTATTTCACTCCTTGGGCGAGATGGTGCTCACGG
CCTCTAAGGACGTCGCATCTTGCGCTAGGAACCTTCGCATCTTGCGCTAG
GAACCTACTGTGGGACTGGCGGCGTGGTTCTGAGATGGCTCTCCTTCCGA
CGGCCTCCGGGTTGCCGTCCAGCGTGGCGGCTCCCAAGGTAATATGCCGC
TCTTGCTGCTTCTCCCCCTCAAAGCCGGACGTGATATTCACGTTGCAGAG
CGGGCAGCGCGGGAGCGCTTACGTCACCGAGTGGAAGTTCGCGCAGGCGG
CTACCGCGGTCGGCACCACGGGAGAGGGGGATAGGGGACATAAGCAAGGG
GACGGGGACGTGGACACTAAGTTCTCGGTGAGAGCCGTCCGCGTGAAACG
CGTGTCTCCGCACCCGGCGACCAGCATGTCTGTCCGGAACGACGGTGTGC
GTTTGGCCGTTGCAAACGTGGAAGGAACTGTGATCGTCTACCGGCTGCCG
GGCTTTGCGAAGACTGTGGGACTGGCGGCGTGGTTCTGAGATGGCTCTCC
TTCCGACGGCCTCCGGGTTGCCGTCCAGCGTGGCGGCTCCCAAGGTAATA
TGCCGCTCTTGCTGCTTCTCCCCCTCAAAGCCGGACGTGATATTCACGTT
GCAGAGCGGGCAGCGCGGGAGCGCTTACGTCACCGAGTGGAAGTTCGCGC
AGGCGGCTACCGCGGTCGGCACCACGGGAGAGGGGGATAGGGGACATAAG
CAAGGGGACGGGGACGTGGACACTAAGTTCTCGGTGAGAGCCGTCCGCGT
GAAACGCGTGTCTCCGCACCCGGCGACCAGCATGTCTGTCCGGAACGACG
GTGTGCGTTTGGCCGTTGCAAACGTGGAAGGAACTGTGATCGTCTACCGG
CTGCCGGGCTTTGCGAAGGTGATGGAGTATCGCGCACACGATCTGCCCGT
AACGGGCCTGGGGTTTACGCCTGATGGGGCAAGCGTCGCGCTTGGAGGCT
ACGACCTACTAGCCGGTTCCGCTGACTACAAAATCACCCTTTTAAAATCT
CAAGGTGAGAGCGTGATGGAGTATCGCGCACACGATCTGCCCGTAACGGG
CCTGGGGTTTACGCCTGATGGGGCAAGCGTCGCGCTTGGAGGCTACGACC
TACTAGCCGGTTCCGCTGACTACAAAATCACCCTTTTAAAATCTCAAGGT
GAGAGC
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