prot_H-elongata_contig100718.65.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100718.65.1
Unique Nameprot_H-elongata_contig100718.65.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length226
Homology
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BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match: D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 2.660e-81
Identity = 138/228 (60.53%), Postives = 159/228 (69.74%), Query Frame = 0 
Query:    1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP---SSVAAPKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGE 225
            SL+V +   C GH KP+TCV FH  G +VLTASKD  +C    LWD  RGSE ALLPT SGLP   S+  AP ++CRSCCFSP KPD IF++QSG RG+AYVTEW+++         G G                V+ V+V  VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF       ALGGYDLLAGSADYKI+L KSQG+
Sbjct:  181 SLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQGD 392
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BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match: A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 4.540e-78
Identity = 136/229 (59.39%), Postives = 160/229 (69.87%), Query Frame = 0 
Query:    1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP--SSVA-APKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGES 226
            SL+V +   C GH KP+TCV FH  G ++LTASKD  +C    LWD  RGSE ALLPT SGLP  +S+A AP ++CRSCCFSP +PD IF++QS  RG+AYVTEW+++         G G                V+ V+V  VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF       ALGGYDLLAGSADYKI+L KSQG +
Sbjct:  181 SLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQGSA 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G743_ECTSI2.660e-8160.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ9_9PHAE4.540e-7859.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 3..41
e-value: 38.0
score: 7.1
coord: 133..172
e-value: 21.0
score: 8.6
coord: 175..221
e-value: 3.4
score: 13.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 9..35
e-value: 0.13
score: 13.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..224
e-value: 1.2E-19
score: 73.0
NoneNo IPR availablePANTHERPTHR23284:SF0PROLACTIN REGULATORY ELEMENT-BINDING PROTEINcoord: 37..221
NoneNo IPR availablePANTHERPTHR23284PROLACTIN REGULATORY ELEMENT BINDING PROTEINcoord: 37..221
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 11..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100718contigH-elongata_contig100718:111..1868 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100718.65.1mRNA_H-elongata_contig100718.65.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100718 111..1868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100718.65.1 ID=prot_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRG
SEMALLPTASGLPSSVAAPKVICRSCCFSPSKPDVIFTLQSGQRGSAYVT
EWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSM
SVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGAS
VALGGYDLLAGSADYKITLLKSQGES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf