Homology
BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match:
D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI)
HSP 1 Score: 258 bits (658), Expect = 2.660e-81
Identity = 138/228 (60.53%), Postives = 159/228 (69.74%), Query Frame = 1
Query: 1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP---SSVAAPKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGE 675
SL+V + C GH KP+TCV FH G +VLTASKD +C LWD RGSE ALLPT SGLP S+ AP ++CRSCCFSP KPD IF++QSG RG+AYVTEW+++ G G V+ V+V VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF ALGGYDLLAGSADYKI+L KSQG+
Sbjct: 181 SLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQGD 392
BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Match:
A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE)
HSP 1 Score: 251 bits (641), Expect = 4.540e-78
Identity = 136/229 (59.39%), Postives = 160/229 (69.87%), Query Frame = 1
Query: 1 SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRGSEMALLPTASGLP--SSVA-APKVICRSCCFSPSKPDVIFTLQSGQRGSAYVTEWKFAQAATAVGTTGEGDRGHKQGDGDVDTKFSVRAVRVKRVSPHPATSMSVRNDGVRLAVANVEGTVIVYRLPGFAKVMEYRAHDLPVTGLGFTPDGASVALGGYDLLAGSADYKITLLKSQGES 678
SL+V + C GH KP+TCV FH G ++LTASKD +C LWD RGSE ALLPT SGLP +S+A AP ++CRSCCFSP +PD IF++QS RG+AYVTEW+++ G G V+ V+V VSPHPATS+SVR+DG RLAV NVEGTV+VYRLPGFAKVMEY AHDLPVTGLGF ALGGYDLLAGSADYKI+L KSQG +
Sbjct: 181 SLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKD-GTCR---LWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAPGGRG------------VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQGSA 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100718.65.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.66e-81 / Id = 60.53 Expect = 4.54e-78 / Id = 59.39 Sequence D7G743_ECTSI A0A6H5JSJ9_9PHAE
Match Name E-value Identity Description
D7G743_ECTSI 2.660e-81 60.53 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JSJ9_9PHAE 4.540e-78 59.39 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 257.3 Seed ortholog evalue 6.7e-66 Seed eggNOG ortholog 2880.D7G743 KEGG ko ko:K13886 EggNOG free text desc. actin filament binding EggNOG OGs COG1985@1,KOG0303@2759 COG Functional cat. H Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04812 Hectar predicted targeting category other localisation Exons 4 Model size 678 Cds size 678 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929548.4036834-CDS-H-elongata_contig100718:110..216 1622929548.4036834-CDS-H-elongata_contig100718:110..216 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 111..216 + 1691679064.6125586-CDS-H-elongata_contig100718:110..216 1691679064.6125586-CDS-H-elongata_contig100718:110..216 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 111..216 + 1622929548.4242847-CDS-H-elongata_contig100718:363..385 1622929548.4242847-CDS-H-elongata_contig100718:363..385 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 364..385 + 1691679064.6366735-CDS-H-elongata_contig100718:363..385 1691679064.6366735-CDS-H-elongata_contig100718:363..385 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 364..385 + 1622929548.4380095-CDS-H-elongata_contig100718:772..1178 1622929548.4380095-CDS-H-elongata_contig100718:772..1178 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 773..1178 + 1691679064.6489146-CDS-H-elongata_contig100718:772..1178 1691679064.6489146-CDS-H-elongata_contig100718:772..1178 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 773..1178 + 1622929548.4586358-CDS-H-elongata_contig100718:1724..1868 1622929548.4586358-CDS-H-elongata_contig100718:1724..1868 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 1725..1868 + 1691679064.6706617-CDS-H-elongata_contig100718:1724..1868 1691679064.6706617-CDS-H-elongata_contig100718:1724..1868 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100718 1725..1868 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100718.65.1
>prot_H-elongata_contig100718.65.1 ID=prot_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
SLAVTLAGKCIGHIKPITCVLFHSLGEMVLTASKDVASCARNLLWDWRRG back to top mRNA from alignment at H-elongata_contig100718:111..1868+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100718.65.1 ID=mRNA_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-elongata_contig100718:111..1868+ (Himanthalia elongata Himel1 dioecious)TCTCTGGCAGTAACCCTTGCCGGGAAATGCATCGGACATATTAAGCCCAT
CACGTGCGTTCTATTTCACTCCTTGGGCGAGATGGTGCTCACGGCCTCTA
AGGACG GTACTTGCAGGCGAGGCAAAGCGGAATGAAGCCAAACGATATAA
CTTCTCGTGATGGCCTTCGCATCTCAAGAGCATATTTTATTCGGGAACGC
GGCTTTACGCGCGATCTGCTGATTGTTTTGCTGTTGGCTGTCGTTGCTCG
GAGTCGCATCTTGCGCTAGGAACCT GTCTTTGTACTATTCATAGTAGAAT
TGCCGGTACCTGTCTGCGTCACTCACACCGCACTTTGCTTAACGTGGGCG
TATTTAGAAGGGAGGTTGGGGCTGGACACAAGCTCAAACGACAGCCGCCC
ACCCCTTGCTATATATTTAATGATTAATTATTAATGATTAATTATGTTAT
CTTGTAGACTGTTACAATGAGAGGAGTAGAGAAGCTCCTTTCCCTTATTG
CTGCTTTTCCATGTCCGTACGTGCTCCCTCAACCCGAGCACGACATGAGA
CACGACACGAGACGACACGGCATGACTCCATTATATACACGAGGCATGTC
ATTACACGGTACATCATATCCCAGCAATCGACCCTCGCCTCCACCCCTTT
CCCTCCTCACAGACTGTGGGACTGGCGGCGTGGTTCTGAGATGGCTCTCC
TTCCGACGGCCTCCGGGTTGCCGTCCAGCGTGGCGGCTCCCAAGGTAATA
TGCCGCTCTTGCTGCTTCTCCCCCTCAAAGCCGGACGTGATATTCACGTT
GCAGAGCGGGCAGCGCGGGAGCGCTTACGTCACCGAGTGGAAGTTCGCGC
AGGCGGCTACCGCGGTCGGCACCACGGGAGAGGGGGATAGGGGACATAAG
CAAGGGGACGGGGACGTGGACACTAAGTTCTCGGTGAGAGCCGTCCGCGT
GAAACGCGTGTCTCCGCACCCGGCGACCAGCATGTCTGTCCGGAACGACG
GTGTGCGTTTGGCCGTTGCAAACGTGGAAGGAACTGTGATCGTCTACCGG
CTGCCGGGCTTTGCGAAG GTGAAGAGAAGGGAAGGGAAGAGGACGCGCGT
TGAAGGTTTATTTATTTGAATGTTGTGCGTGTGTGTGTGTTTTTTTTTGC
TCTGAATACTTTGGAGCGAGATGTGTTCGAAACTTTTGTTTGGTAGCAAA
GCGCCTGTGGTATTTGGTACCGAGCGTTCCGGGCCGTATTGAGCCGAATG
AAAATCCCAGCGTCGCTCGATTATACAAGGCACGTGGACTGCGATGCGCG
CCCCATCCCATTGGTGTTGGTCACTCTTGTCCCCCCATGGCGATACTACG
AAACAATTCTTGAGCATCTTGTCGGGAGGGGCGTATGGAAGGTCATAACA
TAATACCGAACACTATGTTGTTTATTTGGGAGACACAAATATAGACCAAA
TATACACACACACACATACATACATACATACATACATACATACATACAAT
GTGTCTAGCCTATAATTACTAACATGACAATGTCGGAGTGCGCGGCTATG
TGCAATGTAATAAATGCACACACACACACACACAAACACAAACACAAACA
CACACATTTTCCAGGTGATGGAGTATCGCGCACACGATCTGCCCGTAACG
GGCCTGGGGTTTACGCCTGATGGGGCAAGCGTCGCGCTTGGAGGCTACGA
CCTACTAGCCGGTTCCGCTGACTACAAAATCACCCTTTTAAAATCTCAAG
GTGAGAGC back to top Coding sequence (CDS) from alignment at H-elongata_contig100718:111..1868+
>mRNA_H-elongata_contig100718.65.1 ID=mRNA_H-elongata_contig100718.65.1|Name=mRNA_H-elongata_contig100718.65.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig100718:111..1868+ (Himanthalia elongata Himel1 dioecious) back to top