mRNA_H-elongata_contig100713.64.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100713.64.1
Unique NamemRNA_H-elongata_contig100713.64.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Match: D8LE69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE69_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.760e-73
Identity = 128/175 (73.14%), Postives = 140/175 (80.00%), Query Frame = 1 
Query:    1 RYENEAQLSHLFPATDGCFVGMSPQG--EPSALLIEGGGYLAAVYSVPDMHLRGRKALSLPVTRVLSTPECLGSQRGKVLYVVRSPCSPSVFLETMVYSDRGGLQCPEPLLPV-RVGDGXXXXXXXXXMSSAWGGGRPYANAHVVLEANERVVDVKFQPLHTVAELSAWGYRVSG 516
            RYENEAQLSHLFPATDGCFV  S     EPSALL+EGGGYLAAVYS+PDM + GRKALSLPVTRV++TPECLG QRGKVLYVVRSP +PS FLETMVYSDRGGLQCPEPLLPV   G+G         ++  W GGRPYANAH+VLE +ERVVD KFQ L TV EL+ WGYR  G
Sbjct:  281 RYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVLYVVRSPHTPSGFLETMVYSDRGGLQCPEPLLPVVSQGEGGG-------VAPGWAGGRPYANAHLVLEPSERVVDAKFQQLTTVTELATWGYRRGG 448
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BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Match: A0A6H5KK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK27_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.380e-48
Identity = 97/174 (55.75%), Postives = 109/174 (62.64%), Query Frame = 1 
Query:    1 RYENEAQLSHLFPATDGCFVGMSPQG--EPSALLIEGGGYLAAVYSVPDMHLRGRKALSLPVTRVLSTPECLGSQRGKVLYVVRSPCSPSVFLETMVYSDRGGLQCPEPLLPVRVGDGXXXXXXXXXMSSAWGGGRPYANAHVVLEANERVVDVKFQPLHTVAELSAWGYRVSG 516
            RYENEAQLSHLFPATDGCFV  S     EPSALL+EGGGYLAAVYS+PDM + GRKALSLPVTRV++TPECLG QRGKV+                  S  GG                        ++  W GGRPYANAH+VLE +ERVV+ KFQ L T  EL+ WGYR SG
Sbjct:    3 RYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVV------------------SQGGG----------------------GGVAPGWAGGRPYANAHLVLEPSERVVEAKFQQLTTATELATWGYRRSG 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE69_ECTSI1.760e-7373.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK27_9PHAE1.380e-4855.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100713contigH-elongata_contig100713:58..2079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size516
Cds size516
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100713.64.1prot_H-elongata_contig100713.64.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100713 58..2079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.2952983-CDS-H-elongata_contig100713:57..1021622929548.2952983-CDS-H-elongata_contig100713:57..102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 58..102 +
1691679064.550285-CDS-H-elongata_contig100713:57..1021691679064.550285-CDS-H-elongata_contig100713:57..102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 58..102 +
1622929548.334238-CDS-H-elongata_contig100713:630..8131622929548.334238-CDS-H-elongata_contig100713:630..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 631..813 +
1691679064.5633786-CDS-H-elongata_contig100713:630..8131691679064.5633786-CDS-H-elongata_contig100713:630..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 631..813 +
1622929548.3504183-CDS-H-elongata_contig100713:1012..11221622929548.3504183-CDS-H-elongata_contig100713:1012..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 1013..1122 +
1691679064.5940318-CDS-H-elongata_contig100713:1012..11221691679064.5940318-CDS-H-elongata_contig100713:1012..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 1013..1122 +
1622929548.365896-CDS-H-elongata_contig100713:1901..20791622929548.365896-CDS-H-elongata_contig100713:1901..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 1902..2079 +
1691679064.6044986-CDS-H-elongata_contig100713:1901..20791691679064.6044986-CDS-H-elongata_contig100713:1901..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100713 1902..2079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100713.64.1

>prot_H-elongata_contig100713.64.1 ID=prot_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
RYENEAQLSHLFPATDGCFVGMSPQGEPSALLIEGGGYLAAVYSVPDMHL
RGRKALSLPVTRVLSTPECLGSQRGKVLYVVRSPCSPSVFLETMVYSDRG
GLQCPEPLLPVRVGDGGGGGEGGGAMSSAWGGGRPYANAHVVLEANERVV
DVKFQPLHTVAELSAWGYRVSG
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mRNA from alignment at H-elongata_contig100713:58..2079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100713.64.1 ID=mRNA_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-elongata_contig100713:58..2079+ (Himanthalia elongata Himel1 dioecious)
AGGTACGAGAATGAGGCGCAGCTGAGCCACCTCTTCCCCGCGACGGTGAG
AGCATTAGCAGATGTCGCTGTCCGAAGAGAAACATTGGGAACCGATATAC
GACGCCCCGTCGCTGTTCATGCGCGCGCGTCGGATCGATCCGATCCAGAG
GCGACTATACTGTCTAATTGATTGCTGTAGAGGAAAGAGGGTGTCAAGGC
GGAACCGAGGGTGTCAAGAGGGCCAAGAGTTAATAGTAACCTGCTTCTTT
CCCCAGGTTCAAACAGCGATACACTACACTACACTACAATACACTACGCT
ATACTACACGACACTGCACTGCACCACGCTACCCTACACTACCGTACACT
ACATTACACTACCACTATACTACCCTACCCTATACTACACTACCGCTATA
CTACACTACCCTATACTACACTACCCTACACCACGCTACCCTATATTACA
CTACACTATACTACGCTACATTACACTACCGCTATACTACGCTACCCTAC
ACTGTACTAAAGTACCAGCTTAAGACTTTTTCCTCCCTCCGTCACGCGGC
GCAAAACGGTGAAATCCTTTCAGGACGGCTGCTTCGTGGGTATGTCCCCG
CAAGGAGAACCGTCCGCTCTGTTGATCGAGGGCGGTGGGTATCTGGCGGC
TGTGTACTCCGTCCCAGACATGCATCTGAGGGGGAGAAAAGCATTATCGT
TGCCCGTGACCAGGGTTCTGTCCACCCCCGAGTGCTTGGGTTCGCAGCGC
GGGAAGGTGGGTCCGAAAAAAAAAAATCACCAAAGTTAAAGTCGTCTCTC
GGCGAAGAAGACGAGGAAGCATCAGCGCGGGAAACACAAATCGTGAAACA
TTATCAGAGAAACACAAAATCAAAGGAGTACTCGCTGGTTCCACAACAAT
GCATTTAAGACCACCGCCCCATATTGCTAAATGCTGTCGCCCTTTCGATC
GTCAGGTGCTGTACGTGGTCCGCTCTCCTTGTTCTCCATCGGTTTTCCTA
GAGACCATGGTGTACAGCGATCGCGGGGGGCTGCAGTGCCCAGAGCCCCT
ACTCCCGGTGAGGGTGTGGCCCTGCGGAGGCGCAGAGCCCAGGGCTCACA
GAACCTCGATGTTGTTTTTTTTGTTTTAAAGGTTAGGGAATATCGGGGGG
GGGGGGGGGNNNNNNNNNNGGGGGGGGTGGCCCAGGGCCCCAGAGGTTGT
GGGTGTTTTTTTTTTTTTTTGGGGGGGGGGGGCGGGGGGGGGGGGGGGGG
GGGGGTAGATTGCTATTTTTATTCCACCAGGACTCCGTGGAGAAAAGGCA
TGCCAACCAGACACGACGGGACAAGGTGGAAAATGGCATGACAACCAAAA
CCGCAGTTCTGGGCTCCCGGTGTTTTGGTCGAGGCGTGGGTCGTGGTGAC
GTGATACCGCTCTCATTTTACGCGATCGATTTCTTCCTTCCTTCCTTCTT
CGATGGGATGGAAGGGGATGGGATCGATCGGACAGGGCGAAAGGAAAAAC
ATTTATCTGGCTGGACGACGATCAAAAGTATTAATAGTACTTAGTACTAT
TACTACCTACCAGTATTACTATTATTACTAGTACTATTACTACTAGTAGG
AGTATTACTGTCAGTACAGTACAGTACAGTACCGAGATCTCGAGGGAGAA
GAAAGAAAGGGAGAGAGATAAATAAGGGACGGACGAAGGCATGCTGCTGA
GTCAATGTACCACAGCCTCATCAACCGTTGCGAGTTTCTCCTTTAGCCCA
GATCCGATTCGGCGATCTAACCTAAAAAAAAACTCTTGTGTCTCTCGAGT
GAGCAGGTAAAGCTGACGCTGCAGGGGGGTGGTGGAAAATGTAGGGGGGA
CGGCGGCGGTGGCGGAGAAGGAGGAGGAGCGATGTCATCGGCCTGGGGAG
GCGGGCGACCGTACGCCAATGCCCACGTGGTGCTCGAGGCGAACGAGCGC
GTTGTGGACGTTAAGTTCCAACCGCTGCACACCGTCGCTGAGCTCTCGGC
GTGGGGCTATCGTGTGAGCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig100713:58..2079+

>mRNA_H-elongata_contig100713.64.1 ID=mRNA_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig100713:58..2079+ (Himanthalia elongata Himel1 dioecious)
AGGTACGAGAATGAGGCGCAGCTGAGCCACCTCTTCCCCGCGACGAGGTA
CGAGAATGAGGCGCAGCTGAGCCACCTCTTCCCCGCGACGGACGGCTGCT
TCGTGGGTATGTCCCCGCAAGGAGAACCGTCCGCTCTGTTGATCGAGGGC
GGTGGGTATCTGGCGGCTGTGTACTCCGTCCCAGACATGCATCTGAGGGG
GAGAAAAGCATTATCGTTGCCCGTGACCAGGGTTCTGTCCACCCCCGAGT
GCTTGGGTTCGCAGCGCGGGAAGGACGGCTGCTTCGTGGGTATGTCCCCG
CAAGGAGAACCGTCCGCTCTGTTGATCGAGGGCGGTGGGTATCTGGCGGC
TGTGTACTCCGTCCCAGACATGCATCTGAGGGGGAGAAAAGCATTATCGT
TGCCCGTGACCAGGGTTCTGTCCACCCCCGAGTGCTTGGGTTCGCAGCGC
GGGAAGGTGCTGTACGTGGTCCGCTCTCCTTGTTCTCCATCGGTTTTCCT
AGAGACCATGGTGTACAGCGATCGCGGGGGGCTGCAGTGCCCAGAGCCCC
TACTCCCGGTGAGGGTGTGCTGTACGTGGTCCGCTCTCCTTGTTCTCCAT
CGGTTTTCCTAGAGACCATGGTGTACAGCGATCGCGGGGGGCTGCAGTGC
CCAGAGCCCCTACTCCCGGTGAGGGTGGGGGACGGCGGCGGTGGCGGAGA
AGGAGGAGGAGCGATGTCATCGGCCTGGGGAGGCGGGCGACCGTACGCCA
ATGCCCACGTGGTGCTCGAGGCGAACGAGCGCGTTGTGGACGTTAAGTTC
CAACCGCTGCACACCGTCGCTGAGCTCTCGGCGTGGGGCTATCGTGTGAG
CGGCGGGGGACGGCGGCGGTGGCGGAGAAGGAGGAGGAGCGATGTCATCG
GCCTGGGGAGGCGGGCGACCGTACGCCAATGCCCACGTGGTGCTCGAGGC
GAACGAGCGCGTTGTGGACGTTAAGTTCCAACCGCTGCACACCGTCGCTG
AGCTCTCGGCGTGGGGCTATCGTGTGAGCGGC
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