Homology
BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Match:
D8LE69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE69_ECTSI)
HSP 1 Score: 247 bits (631), Expect = 1.760e-73
Identity = 128/175 (73.14%), Postives = 140/175 (80.00%), Query Frame = 1
Query: 1 RYENEAQLSHLFPATDGCFVGMSPQG--EPSALLIEGGGYLAAVYSVPDMHLRGRKALSLPVTRVLSTPECLGSQRGKVLYVVRSPCSPSVFLETMVYSDRGGLQCPEPLLPV-RVGDGXXXXXXXXXMSSAWGGGRPYANAHVVLEANERVVDVKFQPLHTVAELSAWGYRVSG 516
RYENEAQLSHLFPATDGCFV S EPSALL+EGGGYLAAVYS+PDM + GRKALSLPVTRV++TPECLG QRGKVLYVVRSP +PS FLETMVYSDRGGLQCPEPLLPV G+G ++ W GGRPYANAH+VLE +ERVVD KFQ L TV EL+ WGYR G
Sbjct: 281 RYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVLYVVRSPHTPSGFLETMVYSDRGGLQCPEPLLPVVSQGEGGG-------VAPGWAGGRPYANAHLVLEPSERVVDAKFQQLTTVTELATWGYRRGG 448
BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Match:
A0A6H5KK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK27_9PHAE)
HSP 1 Score: 175 bits (444), Expect = 1.380e-48
Identity = 97/174 (55.75%), Postives = 109/174 (62.64%), Query Frame = 1
Query: 1 RYENEAQLSHLFPATDGCFVGMSPQG--EPSALLIEGGGYLAAVYSVPDMHLRGRKALSLPVTRVLSTPECLGSQRGKVLYVVRSPCSPSVFLETMVYSDRGGLQCPEPLLPVRVGDGXXXXXXXXXMSSAWGGGRPYANAHVVLEANERVVDVKFQPLHTVAELSAWGYRVSG 516
RYENEAQLSHLFPATDGCFV S EPSALL+EGGGYLAAVYS+PDM + GRKALSLPVTRV++TPECLG QRGKV+ S GG ++ W GGRPYANAH+VLE +ERVV+ KFQ L T EL+ WGYR SG
Sbjct: 3 RYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVV------------------SQGGG----------------------GGVAPGWAGGRPYANAHLVLEPSERVVEAKFQQLTTATELATWGYRRSG 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100713.64.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.76e-73 / Id = 73.14 Expect = 1.38e-48 / Id = 55.75 Sequence D8LE69_ECTSI A0A6H5KK27_9PHAE
Match Name E-value Identity Description
D8LE69_ECTSI 1.760e-73 73.14 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KK27_9PHAE 1.380e-48 55.75 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 516 Cds size 516 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929548.2952983-CDS-H-elongata_contig100713:57..102 1622929548.2952983-CDS-H-elongata_contig100713:57..102 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 58..102 + 1691679064.550285-CDS-H-elongata_contig100713:57..102 1691679064.550285-CDS-H-elongata_contig100713:57..102 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 58..102 + 1622929548.334238-CDS-H-elongata_contig100713:630..813 1622929548.334238-CDS-H-elongata_contig100713:630..813 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 631..813 + 1691679064.5633786-CDS-H-elongata_contig100713:630..813 1691679064.5633786-CDS-H-elongata_contig100713:630..813 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 631..813 + 1622929548.3504183-CDS-H-elongata_contig100713:1012..1122 1622929548.3504183-CDS-H-elongata_contig100713:1012..1122 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 1013..1122 + 1691679064.5940318-CDS-H-elongata_contig100713:1012..1122 1691679064.5940318-CDS-H-elongata_contig100713:1012..1122 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 1013..1122 + 1622929548.365896-CDS-H-elongata_contig100713:1901..2079 1622929548.365896-CDS-H-elongata_contig100713:1901..2079 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 1902..2079 + 1691679064.6044986-CDS-H-elongata_contig100713:1901..2079 1691679064.6044986-CDS-H-elongata_contig100713:1901..2079 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100713 1902..2079 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100713.64.1
>prot_H-elongata_contig100713.64.1 ID=prot_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
RYENEAQLSHLFPATDGCFVGMSPQGEPSALLIEGGGYLAAVYSVPDMHL back to top mRNA from alignment at H-elongata_contig100713:58..2079+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100713.64.1 ID=mRNA_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-elongata_contig100713:58..2079+ (Himanthalia elongata Himel1 dioecious)AGGTACGAGAATGAGGCGCAGCTGAGCCACCTCTTCCCCGCGACG GTGAG
AGCATTAGCAGATGTCGCTGTCCGAAGAGAAACATTGGGAACCGATATAC
GACGCCCCGTCGCTGTTCATGCGCGCGCGTCGGATCGATCCGATCCAGAG
GCGACTATACTGTCTAATTGATTGCTGTAGAGGAAAGAGGGTGTCAAGGC
GGAACCGAGGGTGTCAAGAGGGCCAAGAGTTAATAGTAACCTGCTTCTTT
CCCCAGGTTCAAACAGCGATACACTACACTACACTACAATACACTACGCT
ATACTACACGACACTGCACTGCACCACGCTACCCTACACTACCGTACACT
ACATTACACTACCACTATACTACCCTACCCTATACTACACTACCGCTATA
CTACACTACCCTATACTACACTACCCTACACCACGCTACCCTATATTACA
CTACACTATACTACGCTACATTACACTACCGCTATACTACGCTACCCTAC
ACTGTACTAAAGTACCAGCTTAAGACTTTTTCCTCCCTCCGTCACGCGGC
GCAAAACGGTGAAATCCTTTCAGGACGGCTGCTTCGTGGGTATGTCCCCG
CAAGGAGAACCGTCCGCTCTGTTGATCGAGGGCGGTGGGTATCTGGCGGC
TGTGTACTCCGTCCCAGACATGCATCTGAGGGGGAGAAAAGCATTATCGT
TGCCCGTGACCAGGGTTCTGTCCACCCCCGAGTGCTTGGGTTCGCAGCGC
GGGAAG GTGGGTCCGAAAAAAAAAAATCACCAAAGTTAAAGTCGTCTCTC
GGCGAAGAAGACGAGGAAGCATCAGCGCGGGAAACACAAATCGTGAAACA
TTATCAGAGAAACACAAAATCAAAGGAGTACTCGCTGGTTCCACAACAAT
GCATTTAAGACCACCGCCCCATATTGCTAAATGCTGTCGCCCTTTCGATC
GTCAGGTGCTGTACGTGGTCCGCTCTCCTTGTTCTCCATCGGTTTTCCTA
GAGACCATGGTGTACAGCGATCGCGGGGGGCTGCAGTGCCCAGAGCCCCT
ACTCCCGGTGAGGGT GTGGCCCTGCGGAGGCGCAGAGCCCAGGGCTCACA
GAACCTCGATGTTGTTTTTTTTGTTTTAAAGGTTAGGGAATATCGGGGGG
GGGGGGGGGNNNNNNNNNNGGGGGGGGTGGCCCAGGGCCCCAGAGGTTGT
GGGTGTTTTTTTTTTTTTTTGGGGGGGGGGGGCGGGGGGGGGGGGGGGGG
GGGGGTAGATTGCTATTTTTATTCCACCAGGACTCCGTGGAGAAAAGGCA
TGCCAACCAGACACGACGGGACAAGGTGGAAAATGGCATGACAACCAAAA
CCGCAGTTCTGGGCTCCCGGTGTTTTGGTCGAGGCGTGGGTCGTGGTGAC
GTGATACCGCTCTCATTTTACGCGATCGATTTCTTCCTTCCTTCCTTCTT
CGATGGGATGGAAGGGGATGGGATCGATCGGACAGGGCGAAAGGAAAAAC
ATTTATCTGGCTGGACGACGATCAAAAGTATTAATAGTACTTAGTACTAT
TACTACCTACCAGTATTACTATTATTACTAGTACTATTACTACTAGTAGG
AGTATTACTGTCAGTACAGTACAGTACAGTACCGAGATCTCGAGGGAGAA
GAAAGAAAGGGAGAGAGATAAATAAGGGACGGACGAAGGCATGCTGCTGA
GTCAATGTACCACAGCCTCATCAACCGTTGCGAGTTTCTCCTTTAGCCCA
GATCCGATTCGGCGATCTAACCTAAAAAAAAACTCTTGTGTCTCTCGAGT
GAGCAGGTAAAGCTGACGCTGCAGGGGGGTGGTGGAAAATGTAGGGGGGA
CGGCGGCGGTGGCGGAGAAGGAGGAGGAGCGATGTCATCGGCCTGGGGAG
GCGGGCGACCGTACGCCAATGCCCACGTGGTGCTCGAGGCGAACGAGCGC
GTTGTGGACGTTAAGTTCCAACCGCTGCACACCGTCGCTGAGCTCTCGGC
GTGGGGCTATCGTGTGAGCGGC back to top Coding sequence (CDS) from alignment at H-elongata_contig100713:58..2079+
>mRNA_H-elongata_contig100713.64.1 ID=mRNA_H-elongata_contig100713.64.1|Name=mRNA_H-elongata_contig100713.64.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig100713:58..2079+ (Himanthalia elongata Himel1 dioecious) back to top