mRNA_H-elongata_contig100496.50.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100496.50.1
Unique NamemRNA_H-elongata_contig100496.50.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100496.50.1 vs. uniprot
Match: D8LP13_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP13_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.960e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 VWRQQTAVRLLCMNVENLFLFFVQRLSNLAGSRRFHNDALRANG 132
            VWR +TA+RLLC +V+ LFLFF QRL+NLAGSRR HNDALRANG
Sbjct: 1743 VWRHRTAIRLLCTSVDGLFLFFAQRLANLAGSRRTHNDALRANG 1786
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BLAST of mRNA_H-elongata_contig100496.50.1 vs. uniprot
Match: A0A6H5KXM7_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.970e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 VWRQQTAVRLLCMNVENLFLFFVQRLSNLAGSRRFHNDALRANG 132
            VWR +TA+RLLC +V+ LFLFF QRL+NLAGSRR HNDALRANG
Sbjct:  421 VWRHRTAIRLLCTSVDTLFLFFAQRLANLAGSRRTHNDALRANG 464
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BLAST of mRNA_H-elongata_contig100496.50.1 vs. uniprot
Match: A0A7S3URI4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URI4_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.930e-6
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 WRQQTAVRLLCMNVENLFLFFVQRLSNLAGSRRFHNDALRANG 132
            W+   ++ +L  +V++LFLFF QRL+NLAG+RR +N+ LR NG
Sbjct:   67 WQNLASIYILFTDVDSLFLFFAQRLANLAGARRMYNERLRENG 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100496.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP13_ECTSI2.960e-1477.27Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KXM7_9PHAE2.970e-1477.27Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A7S3URI4_HETAK2.930e-651.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100496contigH-elongata_contig100496:1380..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue9.1e-12
Seed eggNOG ortholog2880.D8LP13
Preferred nameVAC8
KEGG koko:K08332
GOsGO:0000011,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009607,GO:0009987,GO:0016020,GO:0016043,GO:0016050,GO:0016236,GO:0016237,GO:0022406,GO:0022607,GO:0030447,GO:0030448,GO:0031090,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034727,GO:0036180,GO:0040007,GO:0042144,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044085,GO:0044182,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0048284,GO:0048308,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0061024,GO:0061025,GO:0061919,GO:0070727,GO:0070925,GO:0071255,GO:0071561,GO:0071562,GO:0071563,GO:0071840,GO:0072665,GO:0097576,GO:0098588,GO:0098805,GO:0098852,GO:0140056
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsKOG4224@1,KOG4224@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_006990.1
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.016736-CDS-H-elongata_contig100496:1379..15111622929547.016736-CDS-H-elongata_contig100496:1379..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100496 1380..1511 +
1691679063.758721-CDS-H-elongata_contig100496:1379..15111691679063.758721-CDS-H-elongata_contig100496:1379..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100496 1380..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100496.50.1prot_H-elongata_contig100496.50.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100496 1380..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100496.50.1

>prot_H-elongata_contig100496.50.1 ID=prot_H-elongata_contig100496.50.1|Name=mRNA_H-elongata_contig100496.50.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
VWRQQTAVRLLCMNVENLFLFFVQRLSNLAGSRRFHNDALRANG
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mRNA from alignment at H-elongata_contig100496:1380..1511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100496.50.1 ID=mRNA_H-elongata_contig100496.50.1|Name=mRNA_H-elongata_contig100496.50.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig100496:1380..1511+ (Himanthalia elongata Himel1 dioecious)
GTCTGGCGCCAACAAACTGCCGTACGTCTCCTCTGCATGAACGTGGAAAA
CCTCTTCCTGTTCTTTGTGCAACGCCTTTCCAACCTAGCCGGGTCGCGCC
GTTTCCACAACGACGCTCTAAGAGCAAATGGC
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Coding sequence (CDS) from alignment at H-elongata_contig100496:1380..1511+

>mRNA_H-elongata_contig100496.50.1 ID=mRNA_H-elongata_contig100496.50.1|Name=mRNA_H-elongata_contig100496.50.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig100496:1380..1511+ (Himanthalia elongata Himel1 dioecious)
GTCTGGCGCCAACAAACTGCCGTACGTCTCCTCTGCATGAACGTGGAAAA
CCTCTTCCTGTTCTTTGTGCAACGCCTTTCCAACCTAGCCGGGTCGCGCC
GTTTCCACAACGACGCTCTAAGAGCAAATGGCGTCTGGCGCCAACAAACT
GCCGTACGTCTCCTCTGCATGAACGTGGAAAACCTCTTCCTGTTCTTTGT
GCAACGCCTTTCCAACCTAGCCGGGTCGCGCCGTTTCCACAACGACGCTC
TAAGAGCAAATGGC
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